Psat4g002880.1

Transcript Overview


Name	Psat4g002880.1
Unique Name	Psat4g002880.1_Ps_Cameor_v1a
Type	mRNA
Organism	Pisum sativum (pea)
Sequence length	2068

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4LG4	supercontig	chr4LG4:3542546..3544613 +	Pisum sativum Cameor genome v1a	n/a
chr4LG4	supercontig	chr4LG4:3542546..3544613 +	Pisum sativum Cameor genome v1a	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan: P. sativum Cameor genome v1a	2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot	2019-09-12
Pisum sativum Cameor genome v1a	2019-09-06

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
capsL042	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
capsL045	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
crpsL806	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
caipsL746	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caipsL778	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
capsL617	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
capsL621	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
psvuR303	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuR308	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuR361	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
pspvR354	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pspvR367	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pspvR377	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccpsL068	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccpsL096	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccpsL371	Cajanus cajan Asha genome v1.0	Cajanus cajan
anpsL0206	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0378	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0690	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
aspsL051	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
aspsL205	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
aspsL206	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
pszwsR306	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pstifR307	Vicia faba cv. Tiffany genome v1.0	Vicia faba
pstifR396	Vicia faba cv. Tiffany genome v1.0	Vicia faba
psvfhR271	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
psvfhR307	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
psvfhR383	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
psvrvR260	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvrvR261	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvrvR298	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvrvR302	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvuaR289	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
psvssR359	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
psvssR361	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
psvuaR296	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
psvuaR315	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canpsL617	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canpsL622	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjpsL137	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjpsL140	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjpsL244	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carpsL619		Cicer arietinum
carpsL629		Cicer arietinum
ccapsL193	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccapsL201	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccapsL713	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
psvumR287	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR291	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR398	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR401	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvvaR323	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvvaR329	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvvaR390	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvasR279	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvasR284	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvstR288	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvasR360	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvasR363	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvstR377	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvstR380	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvunR282	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
pspvfR368	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pspvfR389	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vigan.01G539900.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Ca_21895.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
rna-TanjilR_31759	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
jg48485.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Phvul.003G086700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-KK1_026050	Cajanus cajan Asha genome v1.0	Cajanus cajan
Va01G099950.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
rna-XM_014652690.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Cc_v2.0_28163.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Cr_22033.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vfaba.Hedin2.R1.6g002960.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vfaba.Tiffany.R1.6g002200.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Ca_20237	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
LR48_mrnaVigan01g327000	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vum_01G04095.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
PvulFLAVERTChr03.1000526	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigst.01G379300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
evm.model.Chr03.1124	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
XM_058897223.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-XM_004507537.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vigun03g438500.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Psat04G0007900-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Psat4g002880	Psat4g002880_Ps_Cameor_v1a	Pisum sativum	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g002880.1	Psat4g002880.1_Ps_Cameor_v1a-protein	Pisum sativum	polypeptide
Psat4g002880.1_Ps_Cameor_v1a	Psat4g002880.1_Ps_Cameor_v1a	Pisum sativum	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g002880.1.cds1	Psat4g002880.1.cds1_Ps_Cameor_v1a	Pisum sativum	CDS
Psat4g002880.1.cds2	Psat4g002880.1.cds2_Ps_Cameor_v1a	Pisum sativum	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g002880.1.exon1	Psat4g002880.1.exon1_Ps_Cameor_v1a	Pisum sativum	exon
Psat4g002880.1.exon2	Psat4g002880.1.exon2_Ps_Cameor_v1a	Pisum sativum	exon

Homology

The following BLAST results are available for this feature:

BLAST of Psat4g002880.1 vs.

BLAST of Psat4g002880.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF01190	Pollen_Ole_e_I	coord: 79..151 e-value: 1.2E-8 score: 35.2

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4LG4:3542546..3544613+
coding sequence from alignment at chr4LG4:3542546..3544613+

mRNA sequence

>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=mRNA; length=2068bp
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGGTATATACATACATATCTCGAATTAATTCTATTTAAATAACAAGTTT
AATGTGTTATTAATATTCTTTAGTGATTTCAAGATTATTAGTATCACATT
AATATATAAATATTTACAATAATTATATATTGTTGTTGTTGTTGTTCCAT
TGTTTGGTGACAATAGCTTGCTTTCACATTTAGGTGAAATTTCTATTTCG
GAAAATAATATAAGTTGATTCAAATTTACTACTAAATGACATTGAATATT
ATTGATAAGATGTCGTTCTTGATAAATAAAAATTGACAATGATTTTTAAC
CTTCCTGTCAATGCATGGTAAGTAGGGAGAAGCAAATAAAAAGTAGTAAG
TCACATTATGTAATGAAAGATTTATTACTATATGAGAACTAATTAAACAT
GAATAACACACACACACAAACGCATATAACTGCAATTTGTGGTTTTTTAT
TTTATGATGTGGAGAATTTTTTTCAGTTGACAACAATGTTTAGTCCCCTA
CATTGGTGAACTACCATATATATATATATAACCCTCAAATAAGAGATAAA
AAAAATCTTGAAATTGTCAATTTTCAATCATTCAAGTTGAATTGTACTTT
ATATTTAAATATTTTAAATTAATCTTTCATTTTAAAATTAATTGTCAAAT
TAATTATATAGTTTTCAAAAGTGCTGGTATTTAAGGATATACTTGATCAT
ATTTAACTTTAGGGTTTAGTTTGAAAGAGGGTAAGGTCAAGATAGACTAA
TAAAATGGCCAGTGATTAAAATGTTGGGGACTCAATATATATTTTAGTTC
AATGACTCAATATATATTTTAGTTCAATGACTAATATGATAACATTCTAC
GATTTTAGATATCAAAATTTAGGGGTGTTCATGCCGGACTGCAAACCTAA
TTTAGGGGTGTTCATGCCGGACTGCAAACCTAGTGATCGAAACTGAATAA
ACTCATAAATCATCCGAAAACCTATTGATCGAAACTGAATAAACTCATAA
ATTATCCGAACTTATTCATTTACGAATATATCAAATCCGACAAATCCCCA
TCATTATCCAACCAATTGATTTGACATTAGTAGTTTTTTGTTTTTTATTA
TTATTTTAAATCTAATTAGAGATTTAATCACATAAATAATCTTTTTATCA
AATCACATTCTAAATCATTATGAAAAAAACTAATTGTGTCAAATTATGAG
TTACCTTAAGATTTTAATATAATATCTTTAAACTTTTCTATGTTTTTTAA
TTCATGTAAAATGTTCAAAATCATCTTATAATTTAGGATGAAGGGAGTAT
TTCATTGTTTGCCAATGAAAATGAGAGAATTCAAATCAATTTCTTAACGA
AGTCTTTGAAATTTGACTCCAACAACAGGCATTCAATATTTTCTCAACAT
TTTCAAAAAAAAACATGTGAATGTTCATTTGCATCCAAATATGGCTAATT
TAAGATTAACTAATGCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCAT
GGCAGTGAAAGAAAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGA
GTATGGAGATTTTATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCA
ACTTGGAAAAAATATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCA
CTTTGCAGACCAACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCT
CTCTTCCATTGGGAATGGCATCCGCACCTATGACACCGGAAACATAAGGA
TCCAGCATTCAACTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATA
GGGGAAATTAAGGAGTAG

protein sequence of Psat4g002880.1_Ps_Cameor_v1a

>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=201bp
MSYFHANNVLVMLFFLSLLSLLHNIVTGFSVSSQVEQYDHSLLDSLSSRK
EVVEIAGYGEEKLSTVLITGSLHCHHHPHAWPIPGALVAVNCQSHGSERK
GKSMVAKGVTDEYGDFMVDLPSYLHAIPNLEKICRVKVHKIPKGSLCRPT
RHVKKHNGLFKLSSIGNGIRTYDTGNIRIQHSTSEPRRAAPRKDIGEIKE
*

mRNA from alignment at chr4LG4:3542546..3544613+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=mRNA; length=2068bp; location=Sequence derived from: chr4LG4:3542546..3544613+ (Pisum sativum
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGGTATATACATACATATCTCGAATTAATTCTATTTAAATAACAAGTTT
AATGTGTTATTAATATTCTTTAGTGATTTCAAGATTATTAGTATCACATT
AATATATAAATATTTACAATAATTATATATTGTTGTTGTTGTTGTTCCAT
TGTTTGGTGACAATAGCTTGCTTTCACATTTAGGTGAAATTTCTATTTCG
GAAAATAATATAAGTTGATTCAAATTTACTACTAAATGACATTGAATATT
ATTGATAAGATGTCGTTCTTGATAAATAAAAATTGACAATGATTTTTAAC
CTTCCTGTCAATGCATGGTAAGTAGGGAGAAGCAAATAAAAAGTAGTAAG
TCACATTATGTAATGAAAGATTTATTACTATATGAGAACTAATTAAACAT
GAATAACACACACACACAAACGCATATAACTGCAATTTGTGGTTTTTTAT
TTTATGATGTGGAGAATTTTTTTCAGTTGACAACAATGTTTAGTCCCCTA
CATTGGTGAACTACCATATATATATATATAACCCTCAAATAAGAGATAAA
AAAAATCTTGAAATTGTCAATTTTCAATCATTCAAGTTGAATTGTACTTT
ATATTTAAATATTTTAAATTAATCTTTCATTTTAAAATTAATTGTCAAAT
TAATTATATAGTTTTCAAAAGTGCTGGTATTTAAGGATATACTTGATCAT
ATTTAACTTTAGGGTTTAGTTTGAAAGAGGGTAAGGTCAAGATAGACTAA
TAAAATGGCCAGTGATTAAAATGTTGGGGACTCAATATATATTTTAGTTC
AATGACTCAATATATATTTTAGTTCAATGACTAATATGATAACATTCTAC
GATTTTAGATATCAAAATTTAGGGGTGTTCATGCCGGACTGCAAACCTAA
TTTAGGGGTGTTCATGCCGGACTGCAAACCTAGTGATCGAAACTGAATAA
ACTCATAAATCATCCGAAAACCTATTGATCGAAACTGAATAAACTCATAA
ATTATCCGAACTTATTCATTTACGAATATATCAAATCCGACAAATCCCCA
TCATTATCCAACCAATTGATTTGACATTAGTAGTTTTTTGTTTTTTATTA
TTATTTTAAATCTAATTAGAGATTTAATCACATAAATAATCTTTTTATCA
AATCACATTCTAAATCATTATGAAAAAAACTAATTGTGTCAAATTATGAG
TTACCTTAAGATTTTAATATAATATCTTTAAACTTTTCTATGTTTTTTAA
TTCATGTAAAATGTTCAAAATCATCTTATAATTTAGGATGAAGGGAGTAT
TTCATTGTTTGCCAATGAAAATGAGAGAATTCAAATCAATTTCTTAACGA
AGTCTTTGAAATTTGACTCCAACAACAGGCATTCAATATTTTCTCAACAT
TTTCAAAAAAAAACATGTGAATGTTCATTTGCATCCAAATATGGCTAATT
TAAGATTAACTAATGCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCAT
GGCAGTGAAAGAAAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGA
GTATGGAGATTTTATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCA
ACTTGGAAAAAATATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCA
CTTTGCAGACCAACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCT
CTCTTCCATTGGGAATGGCATCCGCACCTATGACACCGGAAACATAAGGA
TCCAGCATTCAACTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATA
GGGGAAATTAAGGAGTAG

Coding sequence (CDS) from alignment at chr4LG4:3542546..3544613+

>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=CDS; length=1206bp; location=Sequence derived from: chr4LG4:3542546..3544613+ (Pisum sativum
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCT
CTCTTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCAT
CACAAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGA
AAAGAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGT
TCTTATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAA
TACCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCATGGCAGTGAAAGA
AAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGAGTATGGAGATTT
TATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCAACTTGGAAAAAA
TATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCACTTTGCAGACCA
ACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCTCTCTTCCATTGG
GAATGGCATCCGCACCTATGACACCGGAAACATAAGGATCCAGCATTCAA
CTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATAGGGGAAATTAAG
GAGTAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCATGGCAGTGAAAGA
AAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGAGTATGGAGATTT
TATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCAACTTGGAAAAAA
TATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCACTTTGCAGACCA
ACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCTCTCTTCCATTGG
GAATGGCATCCGCACCTATGACACCGGAAACATAAGGATCCAGCATTCAA
CTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATAGGGGAAATTAAG
GAGTAG

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