Transcript Overview
| Name | Psat4g002880.1 |
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| Unique Name | Psat4g002880.1_Ps_Cameor_v1a |
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| Type | mRNA |
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| Organism | Pisum sativum (pea) |
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| Sequence length | 2068 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g002880.1 | Psat4g002880.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat4g002880.1_Ps_Cameor_v1a | Psat4g002880.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g002880.1.cds1 | Psat4g002880.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
| Psat4g002880.1.cds2 | Psat4g002880.1.cds2_Ps_Cameor_v1a | Pisum sativum | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g002880.1.exon1 | Psat4g002880.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
| Psat4g002880.1.exon2 | Psat4g002880.1.exon2_Ps_Cameor_v1a | Pisum sativum | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PFAM | PF01190 | Pollen_Ole_e_I | coord: 79..151
e-value: 1.2E-8
score: 35.2 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=mRNA; length=2068bp
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGGTATATACATACATATCTCGAATTAATTCTATTTAAATAACAAGTTT
AATGTGTTATTAATATTCTTTAGTGATTTCAAGATTATTAGTATCACATT
AATATATAAATATTTACAATAATTATATATTGTTGTTGTTGTTGTTCCAT
TGTTTGGTGACAATAGCTTGCTTTCACATTTAGGTGAAATTTCTATTTCG
GAAAATAATATAAGTTGATTCAAATTTACTACTAAATGACATTGAATATT
ATTGATAAGATGTCGTTCTTGATAAATAAAAATTGACAATGATTTTTAAC
CTTCCTGTCAATGCATGGTAAGTAGGGAGAAGCAAATAAAAAGTAGTAAG
TCACATTATGTAATGAAAGATTTATTACTATATGAGAACTAATTAAACAT
GAATAACACACACACACAAACGCATATAACTGCAATTTGTGGTTTTTTAT
TTTATGATGTGGAGAATTTTTTTCAGTTGACAACAATGTTTAGTCCCCTA
CATTGGTGAACTACCATATATATATATATAACCCTCAAATAAGAGATAAA
AAAAATCTTGAAATTGTCAATTTTCAATCATTCAAGTTGAATTGTACTTT
ATATTTAAATATTTTAAATTAATCTTTCATTTTAAAATTAATTGTCAAAT
TAATTATATAGTTTTCAAAAGTGCTGGTATTTAAGGATATACTTGATCAT
ATTTAACTTTAGGGTTTAGTTTGAAAGAGGGTAAGGTCAAGATAGACTAA
TAAAATGGCCAGTGATTAAAATGTTGGGGACTCAATATATATTTTAGTTC
AATGACTCAATATATATTTTAGTTCAATGACTAATATGATAACATTCTAC
GATTTTAGATATCAAAATTTAGGGGTGTTCATGCCGGACTGCAAACCTAA
TTTAGGGGTGTTCATGCCGGACTGCAAACCTAGTGATCGAAACTGAATAA
ACTCATAAATCATCCGAAAACCTATTGATCGAAACTGAATAAACTCATAA
ATTATCCGAACTTATTCATTTACGAATATATCAAATCCGACAAATCCCCA
TCATTATCCAACCAATTGATTTGACATTAGTAGTTTTTTGTTTTTTATTA
TTATTTTAAATCTAATTAGAGATTTAATCACATAAATAATCTTTTTATCA
AATCACATTCTAAATCATTATGAAAAAAACTAATTGTGTCAAATTATGAG
TTACCTTAAGATTTTAATATAATATCTTTAAACTTTTCTATGTTTTTTAA
TTCATGTAAAATGTTCAAAATCATCTTATAATTTAGGATGAAGGGAGTAT
TTCATTGTTTGCCAATGAAAATGAGAGAATTCAAATCAATTTCTTAACGA
AGTCTTTGAAATTTGACTCCAACAACAGGCATTCAATATTTTCTCAACAT
TTTCAAAAAAAAACATGTGAATGTTCATTTGCATCCAAATATGGCTAATT
TAAGATTAACTAATGCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCAT
GGCAGTGAAAGAAAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGA
GTATGGAGATTTTATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCA
ACTTGGAAAAAATATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCA
CTTTGCAGACCAACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCT
CTCTTCCATTGGGAATGGCATCCGCACCTATGACACCGGAAACATAAGGA
TCCAGCATTCAACTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATA
GGGGAAATTAAGGAGTAG back to topprotein sequence of Psat4g002880.1_Ps_Cameor_v1a >Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=201bp
MSYFHANNVLVMLFFLSLLSLLHNIVTGFSVSSQVEQYDHSLLDSLSSRK
EVVEIAGYGEEKLSTVLITGSLHCHHHPHAWPIPGALVAVNCQSHGSERK
GKSMVAKGVTDEYGDFMVDLPSYLHAIPNLEKICRVKVHKIPKGSLCRPT
RHVKKHNGLFKLSSIGNGIRTYDTGNIRIQHSTSEPRRAAPRKDIGEIKE
* back to topmRNA from alignment at chr4LG4:3542546..3544613+ Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=mRNA; length=2068bp; location=Sequence derived from: chr4LG4:3542546..3544613+ (Pisum sativum
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGGTATATACATACATATCTCGAATTAATTCTATTTAAATAACAAGTTT
AATGTGTTATTAATATTCTTTAGTGATTTCAAGATTATTAGTATCACATT
AATATATAAATATTTACAATAATTATATATTGTTGTTGTTGTTGTTCCAT
TGTTTGGTGACAATAGCTTGCTTTCACATTTAGGTGAAATTTCTATTTCG
GAAAATAATATAAGTTGATTCAAATTTACTACTAAATGACATTGAATATT
ATTGATAAGATGTCGTTCTTGATAAATAAAAATTGACAATGATTTTTAAC
CTTCCTGTCAATGCATGGTAAGTAGGGAGAAGCAAATAAAAAGTAGTAAG
TCACATTATGTAATGAAAGATTTATTACTATATGAGAACTAATTAAACAT
GAATAACACACACACACAAACGCATATAACTGCAATTTGTGGTTTTTTAT
TTTATGATGTGGAGAATTTTTTTCAGTTGACAACAATGTTTAGTCCCCTA
CATTGGTGAACTACCATATATATATATATAACCCTCAAATAAGAGATAAA
AAAAATCTTGAAATTGTCAATTTTCAATCATTCAAGTTGAATTGTACTTT
ATATTTAAATATTTTAAATTAATCTTTCATTTTAAAATTAATTGTCAAAT
TAATTATATAGTTTTCAAAAGTGCTGGTATTTAAGGATATACTTGATCAT
ATTTAACTTTAGGGTTTAGTTTGAAAGAGGGTAAGGTCAAGATAGACTAA
TAAAATGGCCAGTGATTAAAATGTTGGGGACTCAATATATATTTTAGTTC
AATGACTCAATATATATTTTAGTTCAATGACTAATATGATAACATTCTAC
GATTTTAGATATCAAAATTTAGGGGTGTTCATGCCGGACTGCAAACCTAA
TTTAGGGGTGTTCATGCCGGACTGCAAACCTAGTGATCGAAACTGAATAA
ACTCATAAATCATCCGAAAACCTATTGATCGAAACTGAATAAACTCATAA
ATTATCCGAACTTATTCATTTACGAATATATCAAATCCGACAAATCCCCA
TCATTATCCAACCAATTGATTTGACATTAGTAGTTTTTTGTTTTTTATTA
TTATTTTAAATCTAATTAGAGATTTAATCACATAAATAATCTTTTTATCA
AATCACATTCTAAATCATTATGAAAAAAACTAATTGTGTCAAATTATGAG
TTACCTTAAGATTTTAATATAATATCTTTAAACTTTTCTATGTTTTTTAA
TTCATGTAAAATGTTCAAAATCATCTTATAATTTAGGATGAAGGGAGTAT
TTCATTGTTTGCCAATGAAAATGAGAGAATTCAAATCAATTTCTTAACGA
AGTCTTTGAAATTTGACTCCAACAACAGGCATTCAATATTTTCTCAACAT
TTTCAAAAAAAAACATGTGAATGTTCATTTGCATCCAAATATGGCTAATT
TAAGATTAACTAATGCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCAT
GGCAGTGAAAGAAAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGA
GTATGGAGATTTTATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCA
ACTTGGAAAAAATATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCA
CTTTGCAGACCAACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCT
CTCTTCCATTGGGAATGGCATCCGCACCTATGACACCGGAAACATAAGGA
TCCAGCATTCAACTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATA
GGGGAAATTAAGGAGTAG back to topCoding sequence (CDS) from alignment at chr4LG4:3542546..3544613+ >Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=CDS; length=1206bp; location=Sequence derived from: chr4LG4:3542546..3544613+ (Pisum sativum
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCT
CTCTTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCAT
CACAAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGA
AAAGAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGT
TCTTATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAA
TACCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCATGGCAGTGAAAGA
AAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGAGTATGGAGATTT
TATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCAACTTGGAAAAAA
TATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCACTTTGCAGACCA
ACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCTCTCTTCCATTGG
GAATGGCATCCGCACCTATGACACCGGAAACATAAGGATCCAGCATTCAA
CTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATAGGGGAAATTAAG
GAGTAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCATGGCAGTGAAAGA
AAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGAGTATGGAGATTT
TATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCAACTTGGAAAAAA
TATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCACTTTGCAGACCA
ACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCTCTCTTCCATTGG
GAATGGCATCCGCACCTATGACACCGGAAACATAAGGATCCAGCATTCAA
CTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATAGGGGAAATTAAG
GAGTAG back to top
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