Psat4g003400.1

Transcript Overview
NamePsat4g003400.1
Unique NamePsat4g003400.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length1424
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:3988605..3990028 +Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:3988605..3990028 +Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsL042Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capsL045Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpsL786Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL746Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL617Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capsL621Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuR303Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR308Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR354Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR377Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpsL068Cajanus cajan Asha genome v1.0Cajanus cajan
ccpsL069Cajanus cajan Asha genome v1.0Cajanus cajan
ccpsL371Cajanus cajan Asha genome v1.0Cajanus cajan
anpsL0206Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0375Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0378Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0690Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspsL051Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspsL205Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspsL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pszwsR306Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR334Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR307Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR260Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR261Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR298Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR302Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvuaR289Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR359Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvssR361Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR296Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR315Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsL617Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpsL622Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL140Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL244Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL619Cicer arietinum
carpsL629Cicer arietinum
ccapsL193Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL201Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL713Cajanus cajan cv. Asha genome v2.0Cajanus cajan
psvumR287Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR291Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR398Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR401Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR323Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR329Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR390Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR279Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR284Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR360Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR363Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR377Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR380Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
psvunR342Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR368Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pspvfR389Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g003400Psat4g003400_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003400.1Psat4g003400.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g003400.1_Ps_Cameor_v1aPsat4g003400.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003400.1.five_prime_utr1Psat4g003400.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003400.1.exon1Psat4g003400.1.exon1_Ps_Cameor_v1aPisum sativumexon
Psat4g003400.1.exon2Psat4g003400.1.exon2_Ps_Cameor_v1aPisum sativumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003400.1.cds1Psat4g003400.1.cds1_Ps_Cameor_v1aPisum sativumCDS
Psat4g003400.1.cds2Psat4g003400.1.cds2_Ps_Cameor_v1aPisum sativumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003400.1.three_prime_utr1Psat4g003400.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Psat4g003400.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006502Protein of unknown function PDDEXK-likePFAMPF04720PDDEXK_6coord: 40..236
e-value: 2.6E-61
score: 207.4
IPR006502Protein of unknown function PDDEXK-likeTIGRFAMTIGR01615TIGR01615coord: 114..237
e-value: 8.4E-49
score: 162.7

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=mRNA; length=1424bp
GAGATTTTATGCATAAATATGTCACCGTTTCTCTGTTATTCTTACTCCAT
TTTCTTGTCATTTTCCTTCTTTCTAAACACAATTTCATCACTCTACCGTC
ATAATCCTTTATTTATTATCAATTTATTAGTAGTTTGCATGCCATAGAGA
TTTATACCTATAAAGAGAGGGAGAGATGGAAATTCAACACAGAATAATAT
CAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTTATGCGAAAGC
AGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTATCAGATCTTGT
GAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCGGTTGTTCATG
AGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGAGAAAAAGGAG
ATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATGTGAAAGGAAA
GATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCCGGAGATAAAT
CTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCGGGAGAGAGGT
TTTGATGCTGGTAATTAACTGCTATTTACTTTTGCTTAATTTATTACCTG
TTGTTATGAATTTCTTTCAATTTAAGTCGTAGAAGGTTTGTTTTTCTGAT
GTTTTGTATTTTTGTGTACAGGTCTTTGCAAAACAAGGTGGGAAAGGAAT
AGAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGG
AAATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTC
GTCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTT
GTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGC
TATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAA
GAAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACT
AATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTG
CAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTG
CAGCATTTAATGTAGATGGTATTGGGATGAAATTATAGTCACGTTGAACA
AGAGTGTACAAAAAATTAATTTTCATTTTTCCCCTTAGCATAGGGCACAG
AAGTGCTTCAGCACATTTTTCCCAGTGATCTGTGTAATTGGGTAATTTTG
CAGTATGAGTTGAGATGAGTTGGGTAATGAAAATTACTATTACATCTATT
CTCTATAAGAAAAAGTTTGGCTCATTTTTGCCTTTATTTTTATTAAAGTA
AGCATATTTCGATATGCACAAGTTACTAAAAGAAAATTCCTTGATATAAA
AGCACCTCTTAGTCTTTTTATTTA
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protein sequence of Psat4g003400.1_Ps_Cameor_v1a

>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=284bp
MEIQHRIISEMGRNIPMRFRRLCESSGSEHSAEDSTDLSDLVKSFMEKNS
VKEDSVVHENDDGEFEWYDYSEKKEILQEIFGDADDDNVKGKIRREVEVA
IELVAGDKSSPEFKRLVMSRLRERGFDAGLCKTRWERNRKFPSGDYEYID
VNYGGNRYIVEISLMAEFEIARPIDQYASLLDVFPFVFVGKVEELKKVVR
LMCTAIKDSMKTMEMHTPPWRRNSYMQAKWFNPYKRTTNEVAATRKSFGF
EAYNCRGNFGSKSAFRVGNLTAAFNVDGIGMKL*
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mRNA from alignment at chr4LG4:3988605..3990028+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=mRNA; length=1424bp; location=Sequence derived from: chr4LG4:3988605..3990028+ (Pisum sativum
GAGATTTTATGCATAAATATGTCACCGTTTCTCTGTTATTCTTACTCCAT
TTTCTTGTCATTTTCCTTCTTTCTAAACACAATTTCATCACTCTACCGTC
ATAATCCTTTATTTATTATCAATTTATTAGTAGTTTGCATGCCATAGAGA
TTTATACCTATAAAGAGAGGGAGAGATGGAAATTCAACACAGAATAATAT
CAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTTATGCGAAAGC
AGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTATCAGATCTTGT
GAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCGGTTGTTCATG
AGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGAGAAAAAGGAG
ATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATGTGAAAGGAAA
GATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCCGGAGATAAAT
CTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCGGGAGAGAGGT
TTTGATGCTGGTAATTAACTGCTATTTACTTTTGCTTAATTTATTACCTG
TTGTTATGAATTTCTTTCAATTTAAGTCGTAGAAGGTTTGTTTTTCTGAT
GTTTTGTATTTTTGTGTACAGGTCTTTGCAAAACAAGGTGGGAAAGGAAT
AGAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGG
AAATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTC
GTCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTT
GTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGC
TATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAA
GAAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACT
AATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTG
CAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTG
CAGCATTTAATGTAGATGGTATTGGGATGAAATTATAGTCACGTTGAACA
AGAGTGTACAAAAAATTAATTTTCATTTTTCCCCTTAGCATAGGGCACAG
AAGTGCTTCAGCACATTTTTCCCAGTGATCTGTGTAATTGGGTAATTTTG
CAGTATGAGTTGAGATGAGTTGGGTAATGAAAATTACTATTACATCTATT
CTCTATAAGAAAAAGTTTGGCTCATTTTTGCCTTTATTTTTATTAAAGTA
AGCATATTTCGATATGCACAAGTTACTAAAAGAAAATTCCTTGATATAAA
AGCACCTCTTAGTCTTTTTATTTA
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Coding sequence (CDS) from alignment at chr4LG4:3988605..3990028+

>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=CDS; length=1704bp; location=Sequence derived from: chr4LG4:3988605..3990028+ (Pisum sativum
ATGGAAATTCAACACAGAATAATATCAGAAATGGGAAGGAATATTCCGAT
GAGATTCCGGAGGTTATGCGAAAGCAGTGGGAGCGAGCACTCGGCAGAAG
ACTCAACTGATTTATCAGATCTTGTGAAATCGTTCATGGAGAAGAATTCT
GTGAAAGAAGATTCGGTTGTTCATGAGAATGATGATGGCGAATTTGAGTG
GTATGATTATTCCGAGAAAAAGGAGATACTGCAAGAGATTTTCGGGGATG
CTGATGATGATAATGTGAAAGGAAAGATTAGAAGAGAGGTTGAAGTTGCA
ATTGAGCTTGTTGCCGGAGATAAATCTTCGCCGGAATTCAAACGCCTTGT
CATGTCACGTTTGCGGGAGAGAGGTTTTGATGCTGATGGAAATTCAACAC
AGAATAATATCAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTT
ATGCGAAAGCAGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTAT
CAGATCTTGTGAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCG
GTTGTTCATGAGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGA
GAAAAAGGAGATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATG
TGAAAGGAAAGATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCC
GGAGATAAATCTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCG
GGAGAGAGGTTTTGATGCTGGTCTTTGCAAAACAAGGTGGGAAAGGAATA
GAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGGA
AATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTCG
TCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTTG
TTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGCT
ATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAAG
AAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACTA
ATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTGC
AGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTGC
AGCATTTAATGTAGATGGTATTGGGATGAAATTATAGGTCTTTGCAAAAC
AAGGTGGGAAAGGAATAGAAAATTTCCATCCGGTGACTACGAGTATATTG
ATGTGAATTATGGTGGAAATCGATACATAGTTGAAATATCTCTTATGGCT
GAATTCGAAATAGCTCGTCCTATCGATCAATATGCTTCTTTACTTGATGT
ATTCCCTTTTGTATTTGTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGA
GGTTGATGTGCACTGCTATTAAGGACTCAATGAAGACTATGGAAATGCAT
ACACCTCCATGGAGAAGAAATAGTTATATGCAAGCAAAGTGGTTTAACCC
TTACAAGAGAACAACTAATGAGGTTGCTGCAACAAGAAAATCCTTTGGAT
TTGAAGCATACAATTGCAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGA
GTTGGCAATTTGACTGCAGCATTTAATGTAGATGGTATTGGGATGAAATT
ATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006502PDDEXK-like