Transcript Overview
| Name | Psat4g003400.1 |
|---|
| Unique Name | Psat4g003400.1_Ps_Cameor_v1a |
|---|
| Type | mRNA |
|---|
| Organism | Pisum sativum (pea) |
|---|
| Sequence length | 1424 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003400.1 | Psat4g003400.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat4g003400.1_Ps_Cameor_v1a | Psat4g003400.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003400.1.five_prime_utr1 | Psat4g003400.1.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003400.1.exon1 | Psat4g003400.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
| Psat4g003400.1.exon2 | Psat4g003400.1.exon2_Ps_Cameor_v1a | Pisum sativum | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003400.1.cds1 | Psat4g003400.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
| Psat4g003400.1.cds2 | Psat4g003400.1.cds2_Ps_Cameor_v1a | Pisum sativum | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003400.1.three_prime_utr1 | Psat4g003400.1.three_prime_utr1_Ps_Cameor_v1a | Pisum sativum | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR006502 | Protein of unknown function PDDEXK-like | PFAM | PF04720 | PDDEXK_6 | coord: 40..236
e-value: 2.6E-61
score: 207.4 |
| IPR006502 | Protein of unknown function PDDEXK-like | TIGRFAM | TIGR01615 | TIGR01615 | coord: 114..237
e-value: 8.4E-49
score: 162.7 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=mRNA; length=1424bp
GAGATTTTATGCATAAATATGTCACCGTTTCTCTGTTATTCTTACTCCAT
TTTCTTGTCATTTTCCTTCTTTCTAAACACAATTTCATCACTCTACCGTC
ATAATCCTTTATTTATTATCAATTTATTAGTAGTTTGCATGCCATAGAGA
TTTATACCTATAAAGAGAGGGAGAGATGGAAATTCAACACAGAATAATAT
CAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTTATGCGAAAGC
AGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTATCAGATCTTGT
GAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCGGTTGTTCATG
AGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGAGAAAAAGGAG
ATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATGTGAAAGGAAA
GATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCCGGAGATAAAT
CTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCGGGAGAGAGGT
TTTGATGCTGGTAATTAACTGCTATTTACTTTTGCTTAATTTATTACCTG
TTGTTATGAATTTCTTTCAATTTAAGTCGTAGAAGGTTTGTTTTTCTGAT
GTTTTGTATTTTTGTGTACAGGTCTTTGCAAAACAAGGTGGGAAAGGAAT
AGAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGG
AAATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTC
GTCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTT
GTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGC
TATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAA
GAAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACT
AATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTG
CAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTG
CAGCATTTAATGTAGATGGTATTGGGATGAAATTATAGTCACGTTGAACA
AGAGTGTACAAAAAATTAATTTTCATTTTTCCCCTTAGCATAGGGCACAG
AAGTGCTTCAGCACATTTTTCCCAGTGATCTGTGTAATTGGGTAATTTTG
CAGTATGAGTTGAGATGAGTTGGGTAATGAAAATTACTATTACATCTATT
CTCTATAAGAAAAAGTTTGGCTCATTTTTGCCTTTATTTTTATTAAAGTA
AGCATATTTCGATATGCACAAGTTACTAAAAGAAAATTCCTTGATATAAA
AGCACCTCTTAGTCTTTTTATTTA back to topprotein sequence of Psat4g003400.1_Ps_Cameor_v1a >Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=284bp
MEIQHRIISEMGRNIPMRFRRLCESSGSEHSAEDSTDLSDLVKSFMEKNS
VKEDSVVHENDDGEFEWYDYSEKKEILQEIFGDADDDNVKGKIRREVEVA
IELVAGDKSSPEFKRLVMSRLRERGFDAGLCKTRWERNRKFPSGDYEYID
VNYGGNRYIVEISLMAEFEIARPIDQYASLLDVFPFVFVGKVEELKKVVR
LMCTAIKDSMKTMEMHTPPWRRNSYMQAKWFNPYKRTTNEVAATRKSFGF
EAYNCRGNFGSKSAFRVGNLTAAFNVDGIGMKL* back to topmRNA from alignment at chr4LG4:3988605..3990028+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=mRNA; length=1424bp; location=Sequence derived from: chr4LG4:3988605..3990028+ (Pisum sativum
GAGATTTTATGCATAAATATGTCACCGTTTCTCTGTTATTCTTACTCCAT
TTTCTTGTCATTTTCCTTCTTTCTAAACACAATTTCATCACTCTACCGTC
ATAATCCTTTATTTATTATCAATTTATTAGTAGTTTGCATGCCATAGAGA
TTTATACCTATAAAGAGAGGGAGAGATGGAAATTCAACACAGAATAATAT
CAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTTATGCGAAAGC
AGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTATCAGATCTTGT
GAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCGGTTGTTCATG
AGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGAGAAAAAGGAG
ATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATGTGAAAGGAAA
GATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCCGGAGATAAAT
CTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCGGGAGAGAGGT
TTTGATGCTGGTAATTAACTGCTATTTACTTTTGCTTAATTTATTACCTG
TTGTTATGAATTTCTTTCAATTTAAGTCGTAGAAGGTTTGTTTTTCTGAT
GTTTTGTATTTTTGTGTACAGGTCTTTGCAAAACAAGGTGGGAAAGGAAT
AGAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGG
AAATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTC
GTCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTT
GTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGC
TATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAA
GAAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACT
AATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTG
CAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTG
CAGCATTTAATGTAGATGGTATTGGGATGAAATTATAGTCACGTTGAACA
AGAGTGTACAAAAAATTAATTTTCATTTTTCCCCTTAGCATAGGGCACAG
AAGTGCTTCAGCACATTTTTCCCAGTGATCTGTGTAATTGGGTAATTTTG
CAGTATGAGTTGAGATGAGTTGGGTAATGAAAATTACTATTACATCTATT
CTCTATAAGAAAAAGTTTGGCTCATTTTTGCCTTTATTTTTATTAAAGTA
AGCATATTTCGATATGCACAAGTTACTAAAAGAAAATTCCTTGATATAAA
AGCACCTCTTAGTCTTTTTATTTA back to topCoding sequence (CDS) from alignment at chr4LG4:3988605..3990028+ >Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=CDS; length=1704bp; location=Sequence derived from: chr4LG4:3988605..3990028+ (Pisum sativum
ATGGAAATTCAACACAGAATAATATCAGAAATGGGAAGGAATATTCCGAT
GAGATTCCGGAGGTTATGCGAAAGCAGTGGGAGCGAGCACTCGGCAGAAG
ACTCAACTGATTTATCAGATCTTGTGAAATCGTTCATGGAGAAGAATTCT
GTGAAAGAAGATTCGGTTGTTCATGAGAATGATGATGGCGAATTTGAGTG
GTATGATTATTCCGAGAAAAAGGAGATACTGCAAGAGATTTTCGGGGATG
CTGATGATGATAATGTGAAAGGAAAGATTAGAAGAGAGGTTGAAGTTGCA
ATTGAGCTTGTTGCCGGAGATAAATCTTCGCCGGAATTCAAACGCCTTGT
CATGTCACGTTTGCGGGAGAGAGGTTTTGATGCTGATGGAAATTCAACAC
AGAATAATATCAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTT
ATGCGAAAGCAGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTAT
CAGATCTTGTGAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCG
GTTGTTCATGAGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGA
GAAAAAGGAGATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATG
TGAAAGGAAAGATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCC
GGAGATAAATCTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCG
GGAGAGAGGTTTTGATGCTGGTCTTTGCAAAACAAGGTGGGAAAGGAATA
GAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGGA
AATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTCG
TCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTTG
TTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGCT
ATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAAG
AAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACTA
ATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTGC
AGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTGC
AGCATTTAATGTAGATGGTATTGGGATGAAATTATAGGTCTTTGCAAAAC
AAGGTGGGAAAGGAATAGAAAATTTCCATCCGGTGACTACGAGTATATTG
ATGTGAATTATGGTGGAAATCGATACATAGTTGAAATATCTCTTATGGCT
GAATTCGAAATAGCTCGTCCTATCGATCAATATGCTTCTTTACTTGATGT
ATTCCCTTTTGTATTTGTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGA
GGTTGATGTGCACTGCTATTAAGGACTCAATGAAGACTATGGAAATGCAT
ACACCTCCATGGAGAAGAAATAGTTATATGCAAGCAAAGTGGTTTAACCC
TTACAAGAGAACAACTAATGAGGTTGCTGCAACAAGAAAATCCTTTGGAT
TTGAAGCATACAATTGCAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGA
GTTGGCAATTTGACTGCAGCATTTAATGTAGATGGTATTGGGATGAAATT
ATAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006502 | PDDEXK-like |
|
