Psat4g003400.1

Transcript Overview


Name	Psat4g003400.1
Unique Name	Psat4g003400.1_Ps_Cameor_v1a
Type	mRNA
Organism	Pisum sativum (pea)
Sequence length	1424

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4LG4	supercontig	chr4LG4:3988605..3990028 +	Pisum sativum Cameor genome v1a	n/a
chr4LG4	supercontig	chr4LG4:3988605..3990028 +	Pisum sativum Cameor genome v1a	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan: P. sativum Cameor genome v1a	2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot	2019-09-12
Pisum sativum Cameor genome v1a	2019-09-06

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
capsL042	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
capsL045	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
crpsL786	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
caipsL746	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
capsL617	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
capsL621	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
psvuR303	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuR308	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuR361	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
pspvR354	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pspvR377	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccpsL068	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccpsL069	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccpsL371	Cajanus cajan Asha genome v1.0	Cajanus cajan
anpsL0206	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0375	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0378	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0690	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
aspsL051	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
aspsL205	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
aspsL206	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
pszwsR306	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pszwsR334	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pstifR307	Vicia faba cv. Tiffany genome v1.0	Vicia faba
psvfhR271	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
psvfhR307	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
psvrvR260	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvrvR261	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvrvR298	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvrvR302	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvuaR289	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
psvssR359	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
psvssR361	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
psvuaR296	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
psvuaR315	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canpsL617	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canpsL622	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjpsL137	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjpsL140	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjpsL244	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carpsL619		Cicer arietinum
carpsL629		Cicer arietinum
ccapsL193	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccapsL201	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccapsL713	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
psvumR287	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR291	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR398	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR401	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvvaR323	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvvaR329	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvvaR390	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvasR279	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvasR284	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvstR288	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvasR360	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvasR363	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvstR377	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvstR380	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvunR282	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
psvunR342	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
pspvfR368	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pspvfR389	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Psat4g003400	Psat4g003400_Ps_Cameor_v1a	Pisum sativum	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g003400.1	Psat4g003400.1_Ps_Cameor_v1a-protein	Pisum sativum	polypeptide
Psat4g003400.1_Ps_Cameor_v1a	Psat4g003400.1_Ps_Cameor_v1a	Pisum sativum	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g003400.1.five_prime_utr1	Psat4g003400.1.five_prime_utr1_Ps_Cameor_v1a	Pisum sativum	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g003400.1.exon1	Psat4g003400.1.exon1_Ps_Cameor_v1a	Pisum sativum	exon
Psat4g003400.1.exon2	Psat4g003400.1.exon2_Ps_Cameor_v1a	Pisum sativum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g003400.1.cds1	Psat4g003400.1.cds1_Ps_Cameor_v1a	Pisum sativum	CDS
Psat4g003400.1.cds2	Psat4g003400.1.cds2_Ps_Cameor_v1a	Pisum sativum	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat4g003400.1.three_prime_utr1	Psat4g003400.1.three_prime_utr1_Ps_Cameor_v1a	Pisum sativum	three_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Psat4g003400.1 vs.

BLAST of Psat4g003400.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006502	Protein of unknown function PDDEXK-like	PFAM	PF04720	PDDEXK_6	coord: 40..236 e-value: 2.6E-61 score: 207.4
IPR006502	Protein of unknown function PDDEXK-like	TIGRFAM	TIGR01615	TIGR01615	coord: 114..237 e-value: 8.4E-49 score: 162.7

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4LG4:3988605..3990028+
coding sequence from alignment at chr4LG4:3988605..3990028+

mRNA sequence

>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=mRNA; length=1424bp
GAGATTTTATGCATAAATATGTCACCGTTTCTCTGTTATTCTTACTCCAT
TTTCTTGTCATTTTCCTTCTTTCTAAACACAATTTCATCACTCTACCGTC
ATAATCCTTTATTTATTATCAATTTATTAGTAGTTTGCATGCCATAGAGA
TTTATACCTATAAAGAGAGGGAGAGATGGAAATTCAACACAGAATAATAT
CAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTTATGCGAAAGC
AGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTATCAGATCTTGT
GAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCGGTTGTTCATG
AGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGAGAAAAAGGAG
ATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATGTGAAAGGAAA
GATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCCGGAGATAAAT
CTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCGGGAGAGAGGT
TTTGATGCTGGTAATTAACTGCTATTTACTTTTGCTTAATTTATTACCTG
TTGTTATGAATTTCTTTCAATTTAAGTCGTAGAAGGTTTGTTTTTCTGAT
GTTTTGTATTTTTGTGTACAGGTCTTTGCAAAACAAGGTGGGAAAGGAAT
AGAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGG
AAATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTC
GTCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTT
GTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGC
TATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAA
GAAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACT
AATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTG
CAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTG
CAGCATTTAATGTAGATGGTATTGGGATGAAATTATAGTCACGTTGAACA
AGAGTGTACAAAAAATTAATTTTCATTTTTCCCCTTAGCATAGGGCACAG
AAGTGCTTCAGCACATTTTTCCCAGTGATCTGTGTAATTGGGTAATTTTG
CAGTATGAGTTGAGATGAGTTGGGTAATGAAAATTACTATTACATCTATT
CTCTATAAGAAAAAGTTTGGCTCATTTTTGCCTTTATTTTTATTAAAGTA
AGCATATTTCGATATGCACAAGTTACTAAAAGAAAATTCCTTGATATAAA
AGCACCTCTTAGTCTTTTTATTTA

protein sequence of Psat4g003400.1_Ps_Cameor_v1a

>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=284bp
MEIQHRIISEMGRNIPMRFRRLCESSGSEHSAEDSTDLSDLVKSFMEKNS
VKEDSVVHENDDGEFEWYDYSEKKEILQEIFGDADDDNVKGKIRREVEVA
IELVAGDKSSPEFKRLVMSRLRERGFDAGLCKTRWERNRKFPSGDYEYID
VNYGGNRYIVEISLMAEFEIARPIDQYASLLDVFPFVFVGKVEELKKVVR
LMCTAIKDSMKTMEMHTPPWRRNSYMQAKWFNPYKRTTNEVAATRKSFGF
EAYNCRGNFGSKSAFRVGNLTAAFNVDGIGMKL*

mRNA from alignment at chr4LG4:3988605..3990028+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=mRNA; length=1424bp; location=Sequence derived from: chr4LG4:3988605..3990028+ (Pisum sativum
GAGATTTTATGCATAAATATGTCACCGTTTCTCTGTTATTCTTACTCCAT
TTTCTTGTCATTTTCCTTCTTTCTAAACACAATTTCATCACTCTACCGTC
ATAATCCTTTATTTATTATCAATTTATTAGTAGTTTGCATGCCATAGAGA
TTTATACCTATAAAGAGAGGGAGAGATGGAAATTCAACACAGAATAATAT
CAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTTATGCGAAAGC
AGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTATCAGATCTTGT
GAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCGGTTGTTCATG
AGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGAGAAAAAGGAG
ATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATGTGAAAGGAAA
GATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCCGGAGATAAAT
CTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCGGGAGAGAGGT
TTTGATGCTGGTAATTAACTGCTATTTACTTTTGCTTAATTTATTACCTG
TTGTTATGAATTTCTTTCAATTTAAGTCGTAGAAGGTTTGTTTTTCTGAT
GTTTTGTATTTTTGTGTACAGGTCTTTGCAAAACAAGGTGGGAAAGGAAT
AGAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGG
AAATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTC
GTCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTT
GTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGC
TATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAA
GAAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACT
AATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTG
CAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTG
CAGCATTTAATGTAGATGGTATTGGGATGAAATTATAGTCACGTTGAACA
AGAGTGTACAAAAAATTAATTTTCATTTTTCCCCTTAGCATAGGGCACAG
AAGTGCTTCAGCACATTTTTCCCAGTGATCTGTGTAATTGGGTAATTTTG
CAGTATGAGTTGAGATGAGTTGGGTAATGAAAATTACTATTACATCTATT
CTCTATAAGAAAAAGTTTGGCTCATTTTTGCCTTTATTTTTATTAAAGTA
AGCATATTTCGATATGCACAAGTTACTAAAAGAAAATTCCTTGATATAAA
AGCACCTCTTAGTCTTTTTATTTA

Coding sequence (CDS) from alignment at chr4LG4:3988605..3990028+

>Psat4g003400.1_Ps_Cameor_v1a ID=Psat4g003400.1_Ps_Cameor_v1a; Name=Psat4g003400.1; organism=Pisum sativum; type=CDS; length=1704bp; location=Sequence derived from: chr4LG4:3988605..3990028+ (Pisum sativum
ATGGAAATTCAACACAGAATAATATCAGAAATGGGAAGGAATATTCCGAT
GAGATTCCGGAGGTTATGCGAAAGCAGTGGGAGCGAGCACTCGGCAGAAG
ACTCAACTGATTTATCAGATCTTGTGAAATCGTTCATGGAGAAGAATTCT
GTGAAAGAAGATTCGGTTGTTCATGAGAATGATGATGGCGAATTTGAGTG
GTATGATTATTCCGAGAAAAAGGAGATACTGCAAGAGATTTTCGGGGATG
CTGATGATGATAATGTGAAAGGAAAGATTAGAAGAGAGGTTGAAGTTGCA
ATTGAGCTTGTTGCCGGAGATAAATCTTCGCCGGAATTCAAACGCCTTGT
CATGTCACGTTTGCGGGAGAGAGGTTTTGATGCTGATGGAAATTCAACAC
AGAATAATATCAGAAATGGGAAGGAATATTCCGATGAGATTCCGGAGGTT
ATGCGAAAGCAGTGGGAGCGAGCACTCGGCAGAAGACTCAACTGATTTAT
CAGATCTTGTGAAATCGTTCATGGAGAAGAATTCTGTGAAAGAAGATTCG
GTTGTTCATGAGAATGATGATGGCGAATTTGAGTGGTATGATTATTCCGA
GAAAAAGGAGATACTGCAAGAGATTTTCGGGGATGCTGATGATGATAATG
TGAAAGGAAAGATTAGAAGAGAGGTTGAAGTTGCAATTGAGCTTGTTGCC
GGAGATAAATCTTCGCCGGAATTCAAACGCCTTGTCATGTCACGTTTGCG
GGAGAGAGGTTTTGATGCTGGTCTTTGCAAAACAAGGTGGGAAAGGAATA
GAAAATTTCCATCCGGTGACTACGAGTATATTGATGTGAATTATGGTGGA
AATCGATACATAGTTGAAATATCTCTTATGGCTGAATTCGAAATAGCTCG
TCCTATCGATCAATATGCTTCTTTACTTGATGTATTCCCTTTTGTATTTG
TTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGAGGTTGATGTGCACTGCT
ATTAAGGACTCAATGAAGACTATGGAAATGCATACACCTCCATGGAGAAG
AAATAGTTATATGCAAGCAAAGTGGTTTAACCCTTACAAGAGAACAACTA
ATGAGGTTGCTGCAACAAGAAAATCCTTTGGATTTGAAGCATACAATTGC
AGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGAGTTGGCAATTTGACTGC
AGCATTTAATGTAGATGGTATTGGGATGAAATTATAGGTCTTTGCAAAAC
AAGGTGGGAAAGGAATAGAAAATTTCCATCCGGTGACTACGAGTATATTG
ATGTGAATTATGGTGGAAATCGATACATAGTTGAAATATCTCTTATGGCT
GAATTCGAAATAGCTCGTCCTATCGATCAATATGCTTCTTTACTTGATGT
ATTCCCTTTTGTATTTGTTGGGAAAGTGGAAGAGCTGAAAAAGGTTGTGA
GGTTGATGTGCACTGCTATTAAGGACTCAATGAAGACTATGGAAATGCAT
ACACCTCCATGGAGAAGAAATAGTTATATGCAAGCAAAGTGGTTTAACCC
TTACAAGAGAACAACTAATGAGGTTGCTGCAACAAGAAAATCCTTTGGAT
TTGAAGCATACAATTGCAGGGGCAATTTTGGGAGTAAAAGTGCTTTCAGA
GTTGGCAATTTGACTGCAGCATTTAATGTAGATGGTATTGGGATGAAATT
ATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006502	PDDEXK-like

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