Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Psat6g004080.1 Psat6g004080.1_Ps_Cameor_v1a-protein Pisum sativum polypeptide Psat6g004080.1_Ps_Cameor_v1a Psat6g004080.1_Ps_Cameor_v1a Pisum sativum polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g004080.1.five_prime_utr1 Psat6g004080.1.five_prime_utr1_Ps_Cameor_v1a Pisum sativum five_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g004080.1.exon1 Psat6g004080.1.exon1_Ps_Cameor_v1a Pisum sativum exon Psat6g004080.1.exon2 Psat6g004080.1.exon2_Ps_Cameor_v1a Pisum sativum exon Psat6g004080.1.exon3 Psat6g004080.1.exon3_Ps_Cameor_v1a Pisum sativum exon Psat6g004080.1.exon4 Psat6g004080.1.exon4_Ps_Cameor_v1a Pisum sativum exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g004080.1.cds1 Psat6g004080.1.cds1_Ps_Cameor_v1a Pisum sativum CDS Psat6g004080.1.cds2 Psat6g004080.1.cds2_Ps_Cameor_v1a Pisum sativum CDS Psat6g004080.1.cds3 Psat6g004080.1.cds3_Ps_Cameor_v1a Pisum sativum CDS Psat6g004080.1.cds4 Psat6g004080.1.cds4_Ps_Cameor_v1a Pisum sativum CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g004080.1.three_prime_utr1 Psat6g004080.1.three_prime_utr1_Ps_Cameor_v1a Pisum sativum three_prime_UTR
Homology
BLAST of Psat6g004080.1 vs. DB:Swiss
Match:
RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica OX=39947 GN=RF2a PE=1 SV=1)
HSP 1 Score: 95.5153 bits (236), Expect = 6.395e-20
Identity = 82/142 (57.75%), Postives = 99/142 (69.72%), Query Frame = 1
Query: 1018 RHSPSNSMDSSKTAE----IGMEFGNGEFSSEEMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLR 1431
+H S SMD S + + +G G SS E KK + KLAE+AL DPKRAKRI ANR SAARSKERK +YI+ELE KVQTLQTE TTLS Q LQ D L E++E KLRLQ++EQQ L+DALN+TL +EV+RL+
Sbjct: 132 KHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLK 273
BLAST of Psat6g004080.1 vs. DB:Swiss
Match:
POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 PE=2 SV=1)
HSP 1 Score: 92.8189 bits (229), Expect = 5.325e-19
Identity = 83/149 (55.70%), Postives = 98/149 (65.77%), Query Frame = 1
Query: 1018 RHSPSNSMDSSKTAEIGMEFGNGEFSSEEMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADLGGESL 1464
RH S SMD S + GN + S+ + KK M KLAE+AL DPKRAKRI ANR SAARSKERKT+YI ELE KVQTLQTE TTLS Q T LQ D L E+NE KLRLQ++EQQ L+D LNE L E++ L+ + +L
Sbjct: 156 RHQHSQSMDGSMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSAL 304
BLAST of Psat6g004080.1 vs. DB:Swiss
Match:
BZP18_ARATH (bZIP transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=BZIP18 PE=1 SV=1)
HSP 1 Score: 89.3521 bits (220), Expect = 5.137e-18
Identity = 80/144 (55.56%), Postives = 95/144 (65.97%), Query Frame = 1
Query: 1018 RHSPSNSMDSSKTAEIGMEFGNGEFSSEEMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADL 1449
RH S S+D S T E S E KK M DKLAE+ + DPKRAKRI+ANR SAARSKERK +YI ELE KVQTLQTE TTLS Q + Q D L +E+ E KLRLQ +EQQ++L+DALNE L EV RL+ ++
Sbjct: 114 RHRHSLSVDGSSTLE-----------SIEAKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSENTELKLRLQVMEQQAKLRDALNEQLKKEVERLKFATGEV 246
BLAST of Psat6g004080.1 vs. DB:Swiss
Match:
VIP1_ARATH (Transcription factor VIP1 OS=Arabidopsis thaliana OX=3702 GN=VIP1 PE=1 SV=1)
HSP 1 Score: 83.5741 bits (205), Expect = 3.491e-16
Identity = 89/187 (47.59%), Postives = 112/187 (59.89%), Query Frame = 1
Query: 922 RHRRSFSLDGSIGNFHIEDGSPKLPPLQGRAGR-------HSPSNSMDSS-KTAEIGMEFGNGEFSSEEMKKI---MENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADL 1449
RH RSFS+D +F + G + + +G HS SNSMD +A +E S ++ K M D+LAE+AL DPKRAKRILANR SAARSKERK +Y ELE KVQTLQ E TTLS Q T LQ EL E+ K+RLQ+LEQQ++L+DALNE L E+ RL+ ++
Sbjct: 109 RHVRSFSVDS---DFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILASVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVAGEI 292
BLAST of Psat6g004080.1 vs. DB:Swiss
Match:
RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 SV=2)
HSP 1 Score: 82.8037 bits (203), Expect = 5.209e-16
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1
Query: 1102 EMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADL 1449
E KK M ++L+E+A DPKRAKRILANR SAARSKERK +YI+ELE KVQTLQTE TTLS Q T Q D L E+ E K+RLQ++EQQ+QL+DALN+ L E+ RL+ ++
Sbjct: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEM 230
The following BLAST results are available for this feature:
BLAST of Psat6g004080.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (
BLAST: P. sativum Cameor genome v1a vs. Swissprot )
Total hits: 5
500 1000 1500 2000 2500 3000 Expect = 6.40e-20 / Id = 57.75 Expect = 5.33e-19 / Id = 55.70 Expect = 5.14e-18 / Id = 55.56 Expect = 3.49e-16 / Id = 47.59 Expect = 5.21e-16 / Id = 59.48 Sequence RF2A_ORYSJ POF21_ARATH BZP18_ARATH VIP1_ARATH RF2B_ORYSJ
Match Name E-value Identity Description
RF2A_ORYSJ 6.395e-20 57.75 Transcription factor RF2a OS=Oryza sativa subsp. j... [more] POF21_ARATH 5.325e-19 55.70 Probable transcription factor PosF21 OS=Arabidopsi... [more] BZP18_ARATH 5.137e-18 55.56 bZIP transcription factor 18 OS=Arabidopsis thalia... [more] VIP1_ARATH 3.491e-16 47.59 Transcription factor VIP1 OS=Arabidopsis thaliana ... [more] RF2B_ORYSJ 5.209e-16 59.48 Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1; organism=Pisum sativum; type=mRNA; length=3404bp back to top protein sequence of Psat6g004080.1_Ps_Cameor_v1a
>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=554bp back to top mRNA from alignment at chr6LG2:2727828..2731231+
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1; organism=Pisum sativum; type=mRNA; length=3404bp; location=Sequence derived from: chr6LG2:2727828..2731231+ (Pisum sativumTGGTTGTTGTGAGTAGAAAAGTTATAGTGCTTGATAAGTGTTTGATTTAA
TGCATGAATGA ATGGAAGCTTTTGATCAAAGAGGTAGTGGTAGTAATAAT
CAAAAAATTATTCATGCATTTAGTTCTTCTTCATTAGCTTCATCTCCCAA
ACCCCCAATTCAATTGAATTCTATGCCTATCAATCAAGTTAATCAAATGG
GTTTTCCTGAAAATCACAAAAGTTATAGTATTGGTATACCACCCTCACAC
CCTAATACCAATACCAGTTTATCACCTAAACCTTCATCCGCTTATCCCCA
GTTTTTGTCTTCTTCACAACCCCAAACCCATTCTAGGTCTTTGTCTCAGC
CCACTTTTCTCTCTCTAGATTCCTTTTCACTGCCTCCATTGAGTCCTTCA
CTTTATCCTTTAAGTCCCTCCCCTTTTTTGGACTCGGGTTCTAAAGATGT
TTCCATGGAGGAAAACTTGGCTGCCTCTCATGCTCCTTCGCCTAACCGTG
GTCATGCTGTTCAGCATGGACATTGTCTTCCACCTCGTAAAGGGCATAGA
CGCTCTAGCAGTGATACGCCTTTAGGGATCTCGGAATTTGTTAACTCTGT
CCCTCAGTCGGGGAGTGATCGTCAGAATTTGGTTTCTGGAGGGGAAAAAT
TTGGTTCTGAGAAGCCAATTCAGTTGGTGTTGAAGGATAGGAGCTGTCTC
GATGGATTTGGGAGAGAGAGTTTTAATGCGAGGAAAGAGGACGATGCAGC
TGCAATGGATGATTTGTTTAGTGCCTATATGAATTTGGAGAATATGAATA
ATATGAGTTTTTCTGGTATGGAAGATAGCCGAACTAGTGGTTCAAAGACG
GTTGAAAGCAGTGATAATGAAGCTGAGAGTCATGTAAAAGGAATCAGTTC
TAAGGGTGCGAGTTCAAGCTGTTCAGATGAGAGGAGGGAAGGAATCAAGA
GGAGTTCTAATGGAGATATTGTATCCACTACTCGACATAGGAGAAGTTTC
TCATTGGATGGCTCCATTGGAAATTTTCATATTGAAGATGGATCGCCTAA
GCTTCCTCCTTTACAAGGTCGAGCTGGTCGACACTCGCCTAGCAATTCAA
TGGACAGTAGTAAAACAGCGGAAATTGGCATGGAGTTTGGAAATGGTGAG
TTCAGCTCCGAGGAGATGAAGAAGATAATGGAAAATGATAAACTTGCTGA
AATTGCCCTGTCTGATCCCAAGCGTGCGAAGAG GATTTTGGCCAATCGTCTA
TCAGCTGCTCGCTCTAAAGAGCGGAAGACGAAATATATTTCTGAATTAGA
GCACAAGGTCCAAACTCTTCAGACAGAGACTACTACATTGTCTACTCAGT
ATACCAAATTACAG ATGGATCAT
GTGGAGCTTAAGAATGAGCATAACGAGTACAAATTGAGGCTTCAATCCTT
GGAGCAACAATCCCAACTGAAAGATG CTCTGAACGAGACTTTGGATGCTGAAGTCCGGCGCTT
AAGACGCACCGTAGCAGATCTTGGCGGAGAGTCCCTCCTCTCTAGTCTCA
TGACTCGGCAGCTAGTTATTAACCAGCAAATGCTCCAGTCACAGCAACAG
CAGCCAAACCAGCTTAGAAATTATCAACCGCAAAACAGCCAATCTCTGGA
AGAAACGCAGACTCAGATGCAGCAGAATATTCAACGCAATCATGAATTCC
AAACCCAGCATCAGAATGGCAAAACTACTGCATAA TCTTCAGTAAAAGCT
TCAAAACCAATTCATGATTGTATATGGTTTCCCTTGATTCAAACATATTT
TTTTATATGTAGCTGATGGCTTATAATCAGTTGTATATTAAGCAGTGAAC
TACACCAGTTTGCCTATTTAGGCCTGTTCATTATCTCTAGACTTTAGTTT
AAAATAATTTTACCCATGTTTGAACTGGGAATGTTTTTTCATGTGGAACT
GGTAATGTTTTTTCATGTTGATATACCCTTTTGGTCATATTATGAATACA
TTATACACACATCTTGGTATCACTATCAGCTATATGTTCAAATTTGAATG
GTTC back to top Coding sequence (CDS) from alignment at chr6LG2:2727828..2731231+
>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1; organism=Pisum sativum; type=CDS; length=3324bp; location=Sequence derived from: chr6LG2:2727828..2731231+ (Pisum sativum back to top
