Psat6g004080.1

Transcript Overview


Name	Psat6g004080.1
Unique Name	Psat6g004080.1_Ps_Cameor_v1a
Type	mRNA
Organism	Pisum sativum (pea)
Sequence length	3404

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr6LG2	supercontig	chr6LG2:2727828..2731231 +	Pisum sativum Cameor genome v1a	n/a
chr6LG2	supercontig	chr6LG2:2727828..2731231 +	Pisum sativum Cameor genome v1a	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan: P. sativum Cameor genome v1a	2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot	2019-09-12
Pisum sativum Cameor genome v1a	2019-09-06

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
crpsL366	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crpsL479	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
caipsL389	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
capsL320	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
capsL428	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
psvuR622	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuR651	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
pspvR580	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pspvR700	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccpsL806	Cajanus cajan Asha genome v1.0	Cajanus cajan
anpsL0097	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0304	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0351	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpsL0649	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
aspsL232	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
pszwsR580	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pszwsR594	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pszwsR682	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
pstifR574	Vicia faba cv. Tiffany genome v1.0	Vicia faba
pstifR615	Vicia faba cv. Tiffany genome v1.0	Vicia faba
psvfhR554	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
psvfhR594	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
psvrvR508	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvrvR512	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
psvuaR592	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
psvuaR599	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
psvssR709	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
psvssR715	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canpsL324	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canpsL442	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjpsL597	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carpsL320		Cicer arietinum
ccapsL546	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccapsL663	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
psvumR664	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR692	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvumR697	Vigna umbellata FF25 genome v1.0	Vigna umbellata
psvvaR738	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
psvasR583	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
psvstR592	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvstR619	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
psvstR625	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
pspvfR606	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
psvunR596	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
psvunR623	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
pspvfR737	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
rna-XM_004499171.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Cc_v2.0_15152.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vfaba.Hedin2.R1.3g235600.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Ca_08674.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vfaba.Tiffany.R1.3g191880.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-TanjilR_31038	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-KK1_031827	Cajanus cajan Asha genome v1.0	Cajanus cajan
XM_058869372.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Ca_10755	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Psat06G0012600-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Psat6g004080	Psat6g004080_Ps_Cameor_v1a	Pisum sativum	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Psat6g004080.1	Psat6g004080.1_Ps_Cameor_v1a-protein	Pisum sativum	polypeptide
Psat6g004080.1_Ps_Cameor_v1a	Psat6g004080.1_Ps_Cameor_v1a	Pisum sativum	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat6g004080.1.five_prime_utr1	Psat6g004080.1.five_prime_utr1_Ps_Cameor_v1a	Pisum sativum	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat6g004080.1.exon1	Psat6g004080.1.exon1_Ps_Cameor_v1a	Pisum sativum	exon
Psat6g004080.1.exon2	Psat6g004080.1.exon2_Ps_Cameor_v1a	Pisum sativum	exon
Psat6g004080.1.exon3	Psat6g004080.1.exon3_Ps_Cameor_v1a	Pisum sativum	exon
Psat6g004080.1.exon4	Psat6g004080.1.exon4_Ps_Cameor_v1a	Pisum sativum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat6g004080.1.cds1	Psat6g004080.1.cds1_Ps_Cameor_v1a	Pisum sativum	CDS
Psat6g004080.1.cds2	Psat6g004080.1.cds2_Ps_Cameor_v1a	Pisum sativum	CDS
Psat6g004080.1.cds3	Psat6g004080.1.cds3_Ps_Cameor_v1a	Pisum sativum	CDS
Psat6g004080.1.cds4	Psat6g004080.1.cds4_Ps_Cameor_v1a	Pisum sativum	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Psat6g004080.1.three_prime_utr1	Psat6g004080.1.three_prime_utr1_Ps_Cameor_v1a	Pisum sativum	three_prime_UTR

Homology

[Close]

BLAST of Psat6g004080.1 vs. DB:Swiss
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica OX=39947 GN=RF2a PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.395e-20
Identity = 82/142 (57.75%), Postives = 99/142 (69.72%), Query Frame = 1

Query: 1018 RHSPSNSMDSSKTAE----IGMEFGNGEFSSEEMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLR 1431
            +H  S SMD S + +    +G   G    SS E KK +   KLAE+AL DPKRAKRI ANR SAARSKERK +YI+ELE KVQTLQTE TTLS Q   LQ D   L  E++E KLRLQ++EQQ  L+DALN+TL +EV+RL+
Sbjct:  132 KHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLK 273

[Close]

BLAST of Psat6g004080.1 vs. DB:Swiss
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.325e-19
Identity = 83/149 (55.70%), Postives = 98/149 (65.77%), Query Frame = 1

Query: 1018 RHSPSNSMDSSKTAEIGMEFGNGEFSSEEMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADLGGESL 1464
            RH  S SMD S      +  GN + S+ + KK M   KLAE+AL DPKRAKRI ANR SAARSKERKT+YI ELE KVQTLQTE TTLS Q T LQ D   L  E+NE KLRLQ++EQQ  L+D LNE L  E++ L+     +   +L
Sbjct:  156 RHQHSQSMDGSMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSAL 304

[Close]

BLAST of Psat6g004080.1 vs. DB:Swiss
Match: BZP18_ARATH (bZIP transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=BZIP18 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.137e-18
Identity = 80/144 (55.56%), Postives = 95/144 (65.97%), Query Frame = 1

Query: 1018 RHSPSNSMDSSKTAEIGMEFGNGEFSSEEMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADL 1449
            RH  S S+D S T E           S E KK M  DKLAE+ + DPKRAKRI+ANR SAARSKERK +YI ELE KVQTLQTE TTLS Q +  Q D   L +E+ E KLRLQ +EQQ++L+DALNE L  EV RL+    ++
Sbjct:  114 RHRHSLSVDGSSTLE-----------SIEAKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSENTELKLRLQVMEQQAKLRDALNEQLKKEVERLKFATGEV 246

[Close]

BLAST of Psat6g004080.1 vs. DB:Swiss
Match: VIP1_ARATH (Transcription factor VIP1 OS=Arabidopsis thaliana OX=3702 GN=VIP1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.491e-16
Identity = 89/187 (47.59%), Postives = 112/187 (59.89%), Query Frame = 1

Query:  922 RHRRSFSLDGSIGNFHIEDGSPKLPPLQGRAGR-------HSPSNSMDSS-KTAEIGMEFGNGEFSSEEMKKI---MENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADL 1449
            RH RSFS+D    +F  + G  +   +   +G        HS SNSMD    +A   +E      S ++  K    M  D+LAE+AL DPKRAKRILANR SAARSKERK +Y  ELE KVQTLQ E TTLS Q T LQ    EL  E+   K+RLQ+LEQQ++L+DALNE L  E+ RL+    ++
Sbjct:  109 RHVRSFSVDS---DFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILASVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVAGEI 292

[Close]

BLAST of Psat6g004080.1 vs. DB:Swiss
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.209e-16
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1

Query: 1102 EMKKIMENDKLAEIALSDPKRAKRILANRLSAARSKERKTKYISELEHKVXXXXXXXXXXXXXXXXXXMDHVELKNEHNEYKXXXXXXXXXXXXKDALNETLDAEVRRLRRTVADL 1449
            E KK M  ++L+E+A  DPKRAKRILANR SAARSKERK +YI+ELE KVQTLQTE TTLS Q T  Q D   L  E+ E K+RLQ++EQQ+QL+DALN+ L  E+ RL+    ++
Sbjct:  115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEM 230

The following BLAST results are available for this feature:

BLAST of Psat6g004080.1 vs. DB:Swiss

BLAST of Psat6g004080.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
RF2A_ORYSJ	6.395e-20	57.75	Transcription factor RF2a OS=Oryza sativa subsp. j...	[more]
POF21_ARATH	5.325e-19	55.70	Probable transcription factor PosF21 OS=Arabidopsi...	[more]
BZP18_ARATH	5.137e-18	55.56	bZIP transcription factor 18 OS=Arabidopsis thalia...	[more]
VIP1_ARATH	3.491e-16	47.59	Transcription factor VIP1 OS=Arabidopsis thaliana ...	[more]
RF2B_ORYSJ	5.209e-16	59.48	Transcription factor RF2b OS=Oryza sativa subsp. j...	[more]

InterPro

Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 431..486
None	No IPR available	COILS	Coil	Coil	coord: 403..423
None	No IPR available	GENE3D	1.20.5.170		coord: 387..438 e-value: 4.0E-13 score: 51.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..535
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 299..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..95
None	No IPR available	CDD	cd14703	bZIP_plant_RF2	coord: 388..460 e-value: 1.50043E-13 score: 62.9776
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 387..443
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 383..447 e-value: 3.9E-12 score: 56.3
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 387..444 e-value: 1.4E-10 score: 41.1
IPR004827	Basic-leucine zipper domain	PROSITE	PS50217	BZIP	coord: 385..448 score: 10.783

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6LG2:2727828..2731231+
coding sequence from alignment at chr6LG2:2727828..2731231+

mRNA sequence

>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1; organism=Pisum sativum; type=mRNA; length=3404bp
TGGTTGTTGTGAGTAGAAAAGTTATAGTGCTTGATAAGTGTTTGATTTAA
TGCATGAATGAATGGAAGCTTTTGATCAAAGAGGTAGTGGTAGTAATAAT
CAAAAAATTATTCATGCATTTAGTTCTTCTTCATTAGCTTCATCTCCCAA
ACCCCCAATTCAATTGAATTCTATGCCTATCAATCAAGTTAATCAAATGG
GTTTTCCTGAAAATCACAAAAGTTATAGTATTGGTATACCACCCTCACAC
CCTAATACCAATACCAGTTTATCACCTAAACCTTCATCCGCTTATCCCCA
GTTTTTGTCTTCTTCACAACCCCAAACCCATTCTAGGTCTTTGTCTCAGC
CCACTTTTCTCTCTCTAGATTCCTTTTCACTGCCTCCATTGAGTCCTTCA
CTTTATCCTTTAAGTCCCTCCCCTTTTTTGGACTCGGGTTCTAAAGATGT
TTCCATGGAGGAAAACTTGGCTGCCTCTCATGCTCCTTCGCCTAACCGTG
GTCATGCTGTTCAGCATGGACATTGTCTTCCACCTCGTAAAGGGCATAGA
CGCTCTAGCAGTGATACGCCTTTAGGGATCTCGGAATTTGTTAACTCTGT
CCCTCAGTCGGGGAGTGATCGTCAGAATTTGGTTTCTGGAGGGGAAAAAT
TTGGTTCTGAGAAGCCAATTCAGTTGGTGTTGAAGGATAGGAGCTGTCTC
GATGGATTTGGGAGAGAGAGTTTTAATGCGAGGAAAGAGGACGATGCAGC
TGCAATGGATGATTTGTTTAGTGCCTATATGAATTTGGAGAATATGAATA
ATATGAGTTTTTCTGGTATGGAAGATAGCCGAACTAGTGGTTCAAAGACG
GTTGAAAGCAGTGATAATGAAGCTGAGAGTCATGTAAAAGGAATCAGTTC
TAAGGGTGCGAGTTCAAGCTGTTCAGATGAGAGGAGGGAAGGAATCAAGA
GGAGTTCTAATGGAGATATTGTATCCACTACTCGACATAGGAGAAGTTTC
TCATTGGATGGCTCCATTGGAAATTTTCATATTGAAGATGGATCGCCTAA
GCTTCCTCCTTTACAAGGTCGAGCTGGTCGACACTCGCCTAGCAATTCAA
TGGACAGTAGTAAAACAGCGGAAATTGGCATGGAGTTTGGAAATGGTGAG
TTCAGCTCCGAGGAGATGAAGAAGATAATGGAAAATGATAAACTTGCTGA
AATTGCCCTGTCTGATCCCAAGCGTGCGAAGAGGTAAGATTGGTATTTCT
AGATTCCTTGTTTCTGTGTCTTATTGAAAAAAATTAAAAATTAAAACTAT
GAGTTGTCATTAATGTTGAATTCTCTTATAGGATTTTGGCCAATCGTCTA
TCAGCTGCTCGCTCTAAAGAGCGGAAGACGAAATATATTTCTGAATTAGA
GCACAAGGTCCAAACTCTTCAGACAGAGACTACTACATTGTCTACTCAGT
ATACCAAATTACAGGTGTGTATCATCTGAGTTGAGCTGAGGTTTCCTTTT
CTTCGGATTGTGGATCATATTTTATTGGCATAAATCACGTAGGCTACCGT
TAATTCATTGATCTTTACTTTTTTATCGCACCTGTATCCAGATGGATCAT
GTGGAGCTTAAGAATGAGCATAACGAGTACAAATTGAGGCTTCAATCCTT
GGAGCAACAATCCCAACTGAAAGATGGTATGTGTATGCATTTTCCTTCTA
CTTTATGTTTTGGTTAGCTTAAATCTATTTTAACTTATTCCTCCCTTTGA
AGTGCAAACTGTTTATTTTTTAAGTGGATGATTGTGTTTTTTTATTTTTA
CGGAAATGACCTGCATATATGATCATGCTCAAAGATGTCTGTTTTTCTCT
ATTTAGATGGATTTTATGCGGAATAATAGTCTTTTACTTTGATATTTTTA
AGTGTTTGAATGTAGTAATTCAATTTTTTGAAATGGTTTTGTTAACCGAA
GAAAAAACAAATGACTTTTGATCCAATCTTGTTCAACAATCTCTGCACAG
CTGCACCTTTTACGTTTTCCTGCCTAGCATAAGAATTTGATTTCATCTTG
AGTAATATCTGCATATTTGGAACCCAATTGCTCTTTGTACTAGTACTACT
CTGTTCTGAAGCTCTGTTTTGCGTGTTATATCACTTTAAAACTGTATATA
TGTTTTCGTCTTCAATCAAGCGCAATAGAAACAACAATTACCAAGCTTGA
TGGGATCAGCTATACGGTTCAAATGACGTCATAATTTTCCATCTTAGTAT
CATGTGTTAAGTTCAATGATATATTGTTTACCTTCACTATAATCAATCAT
GGATCGCTTAGTCTGTTAAATTCCGCTATGCTACAAGGCTATAGTAGAGT
TATACTAAAGCCTTTATTTGACAGCACGTTATACTCGATAGTGAACAGTA
ATTATTTGTTCAAATTCGCAATGAAATAGCGGCCTCTATTTGACACCATT
AGTTACCTATAAATTCTCTTTATGGTTTGGCCTTTTGTTGTACTTGATCT
CTCGGTACACCTAATTATTATACTTATTGTTGTCAGACCATCTTTCAGTT
GGTCAACCTTCCTTAGATGTTAAATAGCCGCTATAGTGGCTCTATACCGC
CAGAGCATAGCGGCCGCTATTGTTCCGCAATACGCTAGCGAGTACAAATG
TTATCAAATAGACACTATAGCAGCTTGGACATGATTCTATTTATCTCCAT
TTCACCACCATCCCTCTAGAAGCACTTTTCTATTTTGATTTTGTGCTGAA
ATTGAACATCTCCACCAGACCAAATATTTAGCTATGTATTCATCTGTGTT
CTTATTTTGGCAGCTCTGAACGAGACTTTGGATGCTGAAGTCCGGCGCTT
AAGACGCACCGTAGCAGATCTTGGCGGAGAGTCCCTCCTCTCTAGTCTCA
TGACTCGGCAGCTAGTTATTAACCAGCAAATGCTCCAGTCACAGCAACAG
CAGCCAAACCAGCTTAGAAATTATCAACCGCAAAACAGCCAATCTCTGGA
AGAAACGCAGACTCAGATGCAGCAGAATATTCAACGCAATCATGAATTCC
AAACCCAGCATCAGAATGGCAAAACTACTGCATAATCTTCAGTAAAAGCT
TCAAAACCAATTCATGATTGTATATGGTTTCCCTTGATTCAAACATATTT
TTTTATATGTAGCTGATGGCTTATAATCAGTTGTATATTAAGCAGTGAAC
TACACCAGTTTGCCTATTTAGGCCTGTTCATTATCTCTAGACTTTAGTTT
AAAATAATTTTACCCATGTTTGAACTGGGAATGTTTTTTCATGTGGAACT
GGTAATGTTTTTTCATGTTGATATACCCTTTTGGTCATATTATGAATACA
TTATACACACATCTTGGTATCACTATCAGCTATATGTTCAAATTTGAATG
GTTC

protein sequence of Psat6g004080.1_Ps_Cameor_v1a

>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=554bp
MEAFDQRGSGSNNQKIIHAFSSSSLASSPKPPIQLNSMPINQVNQMGFPE
NHKSYSIGIPPSHPNTNTSLSPKPSSAYPQFLSSSQPQTHSRSLSQPTFL
SLDSFSLPPLSPSLYPLSPSPFLDSGSKDVSMEENLAASHAPSPNRGHAV
QHGHCLPPRKGHRRSSSDTPLGISEFVNSVPQSGSDRQNLVSGGEKFGSE
KPIQLVLKDRSCLDGFGRESFNARKEDDAAAMDDLFSAYMNLENMNNMSF
SGMEDSRTSGSKTVESSDNEAESHVKGISSKGASSSCSDERREGIKRSSN
GDIVSTTRHRRSFSLDGSIGNFHIEDGSPKLPPLQGRAGRHSPSNSMDSS
KTAEIGMEFGNGEFSSEEMKKIMENDKLAEIALSDPKRAKRILANRLSAA
RSKERKTKYISELEHKVQTLQTETTTLSTQYTKLQMDHVELKNEHNEYKL
RLQSLEQQSQLKDALNETLDAEVRRLRRTVADLGGESLLSSLMTRQLVIN
QQMLQSQQQQPNQLRNYQPQNSQSLEETQTQMQQNIQRNHEFQTQHQNGK
TTA*

mRNA from alignment at chr6LG2:2727828..2731231+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1; organism=Pisum sativum; type=mRNA; length=3404bp; location=Sequence derived from: chr6LG2:2727828..2731231+ (Pisum sativum
TGGTTGTTGTGAGTAGAAAAGTTATAGTGCTTGATAAGTGTTTGATTTAA
TGCATGAATGAATGGAAGCTTTTGATCAAAGAGGTAGTGGTAGTAATAAT
CAAAAAATTATTCATGCATTTAGTTCTTCTTCATTAGCTTCATCTCCCAA
ACCCCCAATTCAATTGAATTCTATGCCTATCAATCAAGTTAATCAAATGG
GTTTTCCTGAAAATCACAAAAGTTATAGTATTGGTATACCACCCTCACAC
CCTAATACCAATACCAGTTTATCACCTAAACCTTCATCCGCTTATCCCCA
GTTTTTGTCTTCTTCACAACCCCAAACCCATTCTAGGTCTTTGTCTCAGC
CCACTTTTCTCTCTCTAGATTCCTTTTCACTGCCTCCATTGAGTCCTTCA
CTTTATCCTTTAAGTCCCTCCCCTTTTTTGGACTCGGGTTCTAAAGATGT
TTCCATGGAGGAAAACTTGGCTGCCTCTCATGCTCCTTCGCCTAACCGTG
GTCATGCTGTTCAGCATGGACATTGTCTTCCACCTCGTAAAGGGCATAGA
CGCTCTAGCAGTGATACGCCTTTAGGGATCTCGGAATTTGTTAACTCTGT
CCCTCAGTCGGGGAGTGATCGTCAGAATTTGGTTTCTGGAGGGGAAAAAT
TTGGTTCTGAGAAGCCAATTCAGTTGGTGTTGAAGGATAGGAGCTGTCTC
GATGGATTTGGGAGAGAGAGTTTTAATGCGAGGAAAGAGGACGATGCAGC
TGCAATGGATGATTTGTTTAGTGCCTATATGAATTTGGAGAATATGAATA
ATATGAGTTTTTCTGGTATGGAAGATAGCCGAACTAGTGGTTCAAAGACG
GTTGAAAGCAGTGATAATGAAGCTGAGAGTCATGTAAAAGGAATCAGTTC
TAAGGGTGCGAGTTCAAGCTGTTCAGATGAGAGGAGGGAAGGAATCAAGA
GGAGTTCTAATGGAGATATTGTATCCACTACTCGACATAGGAGAAGTTTC
TCATTGGATGGCTCCATTGGAAATTTTCATATTGAAGATGGATCGCCTAA
GCTTCCTCCTTTACAAGGTCGAGCTGGTCGACACTCGCCTAGCAATTCAA
TGGACAGTAGTAAAACAGCGGAAATTGGCATGGAGTTTGGAAATGGTGAG
TTCAGCTCCGAGGAGATGAAGAAGATAATGGAAAATGATAAACTTGCTGA
AATTGCCCTGTCTGATCCCAAGCGTGCGAAGAGGTAAGATTGGTATTTCT
AGATTCCTTGTTTCTGTGTCTTATTGAAAAAAATTAAAAATTAAAACTAT
GAGTTGTCATTAATGTTGAATTCTCTTATAGGATTTTGGCCAATCGTCTA
TCAGCTGCTCGCTCTAAAGAGCGGAAGACGAAATATATTTCTGAATTAGA
GCACAAGGTCCAAACTCTTCAGACAGAGACTACTACATTGTCTACTCAGT
ATACCAAATTACAGGTGTGTATCATCTGAGTTGAGCTGAGGTTTCCTTTT
CTTCGGATTGTGGATCATATTTTATTGGCATAAATCACGTAGGCTACCGT
TAATTCATTGATCTTTACTTTTTTATCGCACCTGTATCCAGATGGATCAT
GTGGAGCTTAAGAATGAGCATAACGAGTACAAATTGAGGCTTCAATCCTT
GGAGCAACAATCCCAACTGAAAGATGGTATGTGTATGCATTTTCCTTCTA
CTTTATGTTTTGGTTAGCTTAAATCTATTTTAACTTATTCCTCCCTTTGA
AGTGCAAACTGTTTATTTTTTAAGTGGATGATTGTGTTTTTTTATTTTTA
CGGAAATGACCTGCATATATGATCATGCTCAAAGATGTCTGTTTTTCTCT
ATTTAGATGGATTTTATGCGGAATAATAGTCTTTTACTTTGATATTTTTA
AGTGTTTGAATGTAGTAATTCAATTTTTTGAAATGGTTTTGTTAACCGAA
GAAAAAACAAATGACTTTTGATCCAATCTTGTTCAACAATCTCTGCACAG
CTGCACCTTTTACGTTTTCCTGCCTAGCATAAGAATTTGATTTCATCTTG
AGTAATATCTGCATATTTGGAACCCAATTGCTCTTTGTACTAGTACTACT
CTGTTCTGAAGCTCTGTTTTGCGTGTTATATCACTTTAAAACTGTATATA
TGTTTTCGTCTTCAATCAAGCGCAATAGAAACAACAATTACCAAGCTTGA
TGGGATCAGCTATACGGTTCAAATGACGTCATAATTTTCCATCTTAGTAT
CATGTGTTAAGTTCAATGATATATTGTTTACCTTCACTATAATCAATCAT
GGATCGCTTAGTCTGTTAAATTCCGCTATGCTACAAGGCTATAGTAGAGT
TATACTAAAGCCTTTATTTGACAGCACGTTATACTCGATAGTGAACAGTA
ATTATTTGTTCAAATTCGCAATGAAATAGCGGCCTCTATTTGACACCATT
AGTTACCTATAAATTCTCTTTATGGTTTGGCCTTTTGTTGTACTTGATCT
CTCGGTACACCTAATTATTATACTTATTGTTGTCAGACCATCTTTCAGTT
GGTCAACCTTCCTTAGATGTTAAATAGCCGCTATAGTGGCTCTATACCGC
CAGAGCATAGCGGCCGCTATTGTTCCGCAATACGCTAGCGAGTACAAATG
TTATCAAATAGACACTATAGCAGCTTGGACATGATTCTATTTATCTCCAT
TTCACCACCATCCCTCTAGAAGCACTTTTCTATTTTGATTTTGTGCTGAA
ATTGAACATCTCCACCAGACCAAATATTTAGCTATGTATTCATCTGTGTT
CTTATTTTGGCAGCTCTGAACGAGACTTTGGATGCTGAAGTCCGGCGCTT
AAGACGCACCGTAGCAGATCTTGGCGGAGAGTCCCTCCTCTCTAGTCTCA
TGACTCGGCAGCTAGTTATTAACCAGCAAATGCTCCAGTCACAGCAACAG
CAGCCAAACCAGCTTAGAAATTATCAACCGCAAAACAGCCAATCTCTGGA
AGAAACGCAGACTCAGATGCAGCAGAATATTCAACGCAATCATGAATTCC
AAACCCAGCATCAGAATGGCAAAACTACTGCATAATCTTCAGTAAAAGCT
TCAAAACCAATTCATGATTGTATATGGTTTCCCTTGATTCAAACATATTT
TTTTATATGTAGCTGATGGCTTATAATCAGTTGTATATTAAGCAGTGAAC
TACACCAGTTTGCCTATTTAGGCCTGTTCATTATCTCTAGACTTTAGTTT
AAAATAATTTTACCCATGTTTGAACTGGGAATGTTTTTTCATGTGGAACT
GGTAATGTTTTTTCATGTTGATATACCCTTTTGGTCATATTATGAATACA
TTATACACACATCTTGGTATCACTATCAGCTATATGTTCAAATTTGAATG
GTTC

Coding sequence (CDS) from alignment at chr6LG2:2727828..2731231+

>Psat6g004080.1_Ps_Cameor_v1a ID=Psat6g004080.1_Ps_Cameor_v1a; Name=Psat6g004080.1; organism=Pisum sativum; type=CDS; length=3324bp; location=Sequence derived from: chr6LG2:2727828..2731231+ (Pisum sativum
ATGGAAGCTTTTGATCAAAGAGGTAGTGGTAGTAATAATCAAAAAATTAT
TCATGCATTTAGTTCTTCTTCATTAGCTTCATCTCCCAAACCCCCAATTC
AATTGAATTCTATGCCTATCAATCAAGTTAATCAAATGGGTTTTCCTGAA
AATCACAAAAGTTATAGTATTGGTATACCACCCTCACACCCTAATACCAA
TACCAGTTTATCACCTAAACCTTCATCCGCTTATCCCCAGTTTTTGTCTT
CTTCACAACCCCAAACCCATTCTAGGTCTTTGTCTCAGCCCACTTTTCTC
TCTCTAGATTCCTTTTCACTGCCTCCATTGAGTCCTTCACTTTATCCTTT
AAGTCCCTCCCCTTTTTTGGACTCGGGTTCTAAAGATGTTTCCATGGAGG
AAAACTTGGCTGCCTCTCATGCTCCTTCGCCTAACCGTGGTCATGCTGTT
CAGCATGGACATTGTCTTCCACCTCGTAAAGGGCATAGACGCTCTAGCAG
TGATACGCCTTTAGGGATCTCGGAATTTGTTAACTCTGTCCCTCAGTCGG
GGAGTGATCGTCAGAATTTGGTTTCTGGAGGGGAAAAATTTGGTTCTGAG
AAGCCAATTCAGTTGGTGTTGAAGGATAGGAGCTGTCTCGATGGATTTGG
GAGAGAGAGTTTTAATGCGAGGAAAGAGGACGATGCAGCTGCAATGGATG
ATTTGTTTAGTGCCTATATGAATTTGGAGAATATGAATAATATGAGTTTT
TCTGGTATGGAAGATAGCCGAACTAGTGGTTCAAAGACGGTTGAAAGCAG
TGATAATGAAGCTGAGAGTCATGTAAAAGGAATCAGTTCTAAGGGTGCGA
GTTCAAGCTGTTCAGATGAGAGGAGGGAAGGAATCAAGAGGAGTTCTAAT
GGAGATATTGTATCCACTACTCGACATAGGAGAAGTTTCTCATTGGATGG
CTCCATTGGAAATTTTCATATTGAAGATGGATCGCCTAAGCTTCCTCCTT
TACAAGGTCGAGCTGGTCGACACTCGCCTAGCAATTCAATGGACAGTAGT
AAAACAGCGGAAATTGGCATGGAGTTTGGAAATGGTGAGTTCAGCTCCGA
GGAGATGAAGAAGATAATGGAAAATGATAAACTTGCTGAAATTGCCCTGT
CTGATCCCAAGCGTGCGAAGAGATGGAAGCTTTTGATCAAAGAGGTAGTG
GTAGTAATAATCAAAAAATTATTCATGCATTTAGTTCTTCTTCATTAGCT
TCATCTCCCAAACCCCCAATTCAATTGAATTCTATGCCTATCAATCAAGT
TAATCAAATGGGTTTTCCTGAAAATCACAAAAGTTATAGTATTGGTATAC
CACCCTCACACCCTAATACCAATACCAGTTTATCACCTAAACCTTCATCC
GCTTATCCCCAGTTTTTGTCTTCTTCACAACCCCAAACCCATTCTAGGTC
TTTGTCTCAGCCCACTTTTCTCTCTCTAGATTCCTTTTCACTGCCTCCAT
TGAGTCCTTCACTTTATCCTTTAAGTCCCTCCCCTTTTTTGGACTCGGGT
TCTAAAGATGTTTCCATGGAGGAAAACTTGGCTGCCTCTCATGCTCCTTC
GCCTAACCGTGGTCATGCTGTTCAGCATGGACATTGTCTTCCACCTCGTA
AAGGGCATAGACGCTCTAGCAGTGATACGCCTTTAGGGATCTCGGAATTT
GTTAACTCTGTCCCTCAGTCGGGGAGTGATCGTCAGAATTTGGTTTCTGG
AGGGGAAAAATTTGGTTCTGAGAAGCCAATTCAGTTGGTGTTGAAGGATA
GGAGCTGTCTCGATGGATTTGGGAGAGAGAGTTTTAATGCGAGGAAAGAG
GACGATGCAGCTGCAATGGATGATTTGTTTAGTGCCTATATGAATTTGGA
GAATATGAATAATATGAGTTTTTCTGGTATGGAAGATAGCCGAACTAGTG
GTTCAAAGACGGTTGAAAGCAGTGATAATGAAGCTGAGAGTCATGTAAAA
GGAATCAGTTCTAAGGGTGCGAGTTCAAGCTGTTCAGATGAGAGGAGGGA
AGGAATCAAGAGGAGTTCTAATGGAGATATTGTATCCACTACTCGACATA
GGAGAAGTTTCTCATTGGATGGCTCCATTGGAAATTTTCATATTGAAGAT
GGATCGCCTAAGCTTCCTCCTTTACAAGGTCGAGCTGGTCGACACTCGCC
TAGCAATTCAATGGACAGTAGTAAAACAGCGGAAATTGGCATGGAGTTTG
GAAATGGTGAGTTCAGCTCCGAGGAGATGAAGAAGATAATGGAAAATGAT
AAACTTGCTGAAATTGCCCTGTCTGATCCCAAGCGTGCGAAGAGGATTTT
GGCCAATCGTCTATCAGCTGCTCGCTCTAAAGAGCGGAAGACGAAATATA
TTTCTGAATTAGAGCACAAGGTCCAAACTCTTCAGACAGAGACTACTACA
TTGTCTACTCAGTATACCAAATTACAGGATTTTGGCCAATCGTCTATCAG
CTGCTCGCTCTAAAGAGCGGAAGACGAAATATATTTCTGAATTAGAGCAC
AAGGTCCAAACTCTTCAGACAGAGACTACTACATTGTCTACTCAGTATAC
CAAATTACAGATGGATCATGTGGAGCTTAAGAATGAGCATAACGAGTACA
AATTGAGGCTTCAATCCTTGGAGCAACAATCCCAACTGAAAGATGATGGA
TCATGTGGAGCTTAAGAATGAGCATAACGAGTACAAATTGAGGCTTCAAT
CCTTGGAGCAACAATCCCAACTGAAAGATGCTCTGAACGAGACTTTGGAT
GCTGAAGTCCGGCGCTTAAGACGCACCGTAGCAGATCTTGGCGGAGAGTC
CCTCCTCTCTAGTCTCATGACTCGGCAGCTAGTTATTAACCAGCAAATGC
TCCAGTCACAGCAACAGCAGCCAAACCAGCTTAGAAATTATCAACCGCAA
AACAGCCAATCTCTGGAAGAAACGCAGACTCAGATGCAGCAGAATATTCA
ACGCAATCATGAATTCCAAACCCAGCATCAGAATGGCAAAACTACTGCAT
AACTCTGAACGAGACTTTGGATGCTGAAGTCCGGCGCTTAAGACGCACCG
TAGCAGATCTTGGCGGAGAGTCCCTCCTCTCTAGTCTCATGACTCGGCAG
CTAGTTATTAACCAGCAAATGCTCCAGTCACAGCAACAGCAGCCAAACCA
GCTTAGAAATTATCAACCGCAAAACAGCCAATCTCTGGAAGAAACGCAGA
CTCAGATGCAGCAGAATATTCAACGCAATCATGAATTCCAAACCCAGCAT
CAGAATGGCAAAACTACTGCATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004827	bZIP

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity

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