Psat6g005600.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.467e-47 Identity = 142/366 (38.80%), Postives = 175/366 (47.81%), Query Frame = 1 Query: 1 MAGFFSLSSGRGKEEAREQEEXXXXXXXXXQ------FLFRNEEIYNNKGFEIWXXXXXXXXXXXXNLN---------NFYXXXXXXXXXXXXXXRRNENNLNDDVSVSFSDESTRFGLTVMRXXXXXXXXXXMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAGGASGS-LACTPIPITTTVSAM--------------------------DAQDERYAYQTAVNIGGRVFKGILYDQGLESSYTGVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFEYSSLYPAPLNAFMAGTQFFPPPRS 972 MAGFF L +Q+ + + ++Q +L+++E NNKGFEIWP HQQ NFYSFG+ G +++ +L +V SD G TV R G MNCQDCGNQAKKDCPH+RCRTCCKSRGF CQTHVKSTWVPAAKRRER QL+SLQ + ++ Q + +N +D G GS LA T + + S + D D+ YAYQTAVNIGG +FKGILYDQG E S+ T N + SSLYPA LN+F+AGT FF PPRS Sbjct: 1 MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNV---VSDHEPG-GFTVTRQGG-------MNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ---------DNHHLNLLASTATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNSFIAGTPFFTPPRS 346
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 8.206e-44 Identity = 140/355 (39.44%), Postives = 183/355 (51.55%), Query Frame = 1 Query: 1 MAGFFSLSSGR--GKEEAREQEEXXXXXXXXXQFLFRNEEIYNNKGFEIWXXXXXXXXXXXXNL---NNFYXXXXXXXXXXXXXXRRNENNLN-DDVSVSFSDESTRFGLTVMRXXXXXXXXXXMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAGGASGSLACT---------------PIPITTT-------VSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLESSYTGVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFEYSSLYPA---PLNAFMA-GTQFFPPPR 969 MAG F L GR K++ +++++N + N +L+++E NNKGFEI+P Q + N YSFG+ GG +++R +L + VS S+ G TV R MNCQDCGNQAKKDCPH+RCRTCCKSRGF CQTHVKSTWV AAKRRERQ QL+ L + + + ND+ GG+ +LACT P I++ VS++D +DE YAYQTAV+IGG VFKGILYDQG S + ++ + N +T TN + + SSLY A P NAF+A GT FF R Sbjct: 1 MAGLFYLG-GRDHNKQDHHQEKDHNEDKSNNYLYLYKDEIYNNNKGFEIFPPQYFQQQQQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGN-------MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGS--ALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGS-IDPSSLYTAVATPFNAFVAGGTPFFASSR 344
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.371e-32 Identity = 95/219 (43.38%), Postives = 126/219 (57.53%), Query Frame = 1 Query: 361 CQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEN------PNDTSAGGASGSLACTPIPITTT-------VSAMDAQDERYAYQTAVNIGGRVFKGILYDQG-LESSYTGVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFEYSSL-YPAPLNAFMAGTQFFPPPRS 972 CQDCGNQ+KKDC H+RCRTCCKSRG C THVKSTWVPAAKRRERQ QLS+ QQ Q ++Q + P++ ++G G+ P ++++ VS++D ++E YAY+TAV+IGG VFKG+LYDQG E S +G + + G SS N + +T+ + +SL YP P+N FM GT FF RS Sbjct: 120 CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNF---PPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHY----IDPASLNYPTPINTFMTGTHFFSNSRS 331
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 1.887e-30 Identity = 74/151 (49.01%), Postives = 93/151 (61.59%), Query Frame = 1 Query: 355 MNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAGGASGSLACTPIP-------------ITTT-------VSAMDAQDERYAYQTAVNIGGRVFKGILYD 747 ++CQDCGNQAKKDC H+RCRTCCKSRGF+C THV+STWVPAAKRRE Q Q Q + +RHREN TS+ SL CT IP ++++ VS+++ +E +AYQTAV+IGG +FKGILYD Sbjct: 142 VSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRE-----RQQQLATVQPQTQLPRGESVPKRHRENLPATSS-----SLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYD 282
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS3_ARATH (Protein SHI RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=SRS3 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.041e-29 Identity = 62/133 (46.62%), Postives = 76/133 (57.14%), Query Frame = 1 Query: 361 CQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAGGASGSLACTPIPITTTVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLE 759 C+DCGNQAKKDC ++RCRTCCKS+ F CQTH+KSTWVPA +R +HQ L Q T+ G L+ VS++D E+YAYQT VNIGG VF+GIL+DQGL Sbjct: 9 CEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHKHQSQPLSTSIPKGVQI----------------HTTPGHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLH 125
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.699e-27 Identity = 67/155 (43.23%), Postives = 82/155 (52.90%), Query Frame = 1 Query: 355 MNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAG----------GASGSLACTPIPITTTVSAM----------DAQDERYAYQTAVNIGGRVFKGILYDQGLE 759 ++C+DCGNQAKKDC H+RCRTCCKSRGF C THV+STW+P A+RRERQ QL S + + + T G A + P + A+ D D +YAYQT VNIGG +FKGILYDQG E Sbjct: 92 ISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS4_ARATH (Protein SHI RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=SRS4 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.319e-23 Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 1 Query: 355 MNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAGGA--SGSLACTPIPITTTVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLE 759 ++CQ+CGNQAKK C H RCRTCCKS G C THV+STW+P AKRRERQ QL + + + ++ + + G ++ + +S D + +YAYQT V I G +FKGILY+QG E Sbjct: 70 ISCQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTSNPTGGSGRVGKYRDINQHATLDSSGLEMGETRFPDEVSSDALFRCVRMSGTDDGEGQYAYQTTVGIAGHLFKGILYNQGPE 206
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.758e-23 Identity = 63/160 (39.38%), Postives = 70/160 (43.75%), Query Frame = 1 Query: 361 CQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAGGASGSLACTPIPITTTVSAMDAQDER---------------------------YAYQTAVNIGGRVFKGILYDQGLE 759 CQDCGNQAKK+C RCRTCCKSRGF C THVKSTWV AA+RRERQ + + A + + P T+ S D R YAYQ V IGG VFKG LYDQGLE Sbjct: 112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLE 271
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS8_ARATH (Protein SHI RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=SRS8 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.352e-19 Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 355 MNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRE 492 ++CQD GNQAKKDC H+RCRTCCKSRGF+C THV+STWVPA KRRE Sbjct: 50 VSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRE 95
BLAST of Psat6g005600.1 vs. DB:Swiss
Match: SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.918e-15 Identity = 48/140 (34.29%), Postives = 68/140 (48.57%), Query Frame = 1 Query: 361 CQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPNDTSAG------GASGSLACTPIPITTTVSAMDAQDE-RYAYQTAVNIGGRVFKGILYDQGLE 759 C+DCGN+AKK+C RCRTCCKSRG+ C THVKSTW+P++ R ++ +Q P TS G G + + T V+A+ ++ YQ V I G +FKG L+ G++ Sbjct: 41 CRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSSSSPSERKKKLKIDKQSSPNVSLL--------PTTTSRQERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVD 172 The following BLAST results are available for this feature:
BLAST of Psat6g005600.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat6g005600.1_Ps_Cameor_v1a ID=Psat6g005600.1_Ps_Cameor_v1a; Name=Psat6g005600.1; organism=Pisum sativum; type=mRNA; length=1466bpback to top protein sequence of Psat6g005600.1_Ps_Cameor_v1a >Psat6g005600.1_Ps_Cameor_v1a ID=Psat6g005600.1_Ps_Cameor_v1a; Name=Psat6g005600.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=325bpback to top mRNA from alignment at chr6LG2:3906949..3908414+ Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below.>Psat6g005600.1_Ps_Cameor_v1a ID=Psat6g005600.1_Ps_Cameor_v1a; Name=Psat6g005600.1; organism=Pisum sativum; type=mRNA; length=1466bp; location=Sequence derived from: chr6LG2:3906949..3908414+ (Pisum sativumback to top Coding sequence (CDS) from alignment at chr6LG2:3906949..3908414+ >Psat6g005600.1_Ps_Cameor_v1a ID=Psat6g005600.1_Ps_Cameor_v1a; Name=Psat6g005600.1; organism=Pisum sativum; type=CDS; length=1950bp; location=Sequence derived from: chr6LG2:3906949..3908414+ (Pisum sativumback to top |