rna-KK1_019879
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOA_DICDI (ELMO domain-containing protein A OS=Dictyostelium discoideum OX=44689 GN=elmoA PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 3.689e-26 Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 1 Query: 178 VFFDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAV------------------FLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLKRTR 666
V F+ +H L LWS ++PG +L+S +S+QWK+MG+QG DP TDFR G L+NL++FA+ ++ F++I+ Q + EYP A AG+ +TF + + T + + F + + AF+ +YC F ++D W + N TYM F ++ +
Sbjct: 375 VTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRKE-REYPTATAGIVLTFELYNSIFKMGTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMNGTYMHFQKIMSSVK 554
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOB_DICDI (ELMO domain-containing protein B OS=Dictyostelium discoideum OX=44689 GN=elmoB PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.123e-23 Identity = 54/176 (30.68%), Postives = 91/176 (51.70%), Query Frame = 1 Query: 184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNA-TYMEFNDVLKRTRLQLEKELLMGDVLR 708
+D + L+H+ +L LW A P + +S +W +G+QG DP+TDFRG G + L+NL++F+ S + ILK K YPFA G+NIT +++ ++D K F L +E LY + F+ D+ ++ + + MEFN + K ++ + + +LR
Sbjct: 118 YDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLIDKPHFKIYFFKNGSTLTQFNE-------LYSLVFISFDRFYQSKKPKSIMEFNTIKKEFETKISQNSDLVQLLR 283
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOC_DICDI (ELMO domain-containing protein C OS=Dictyostelium discoideum OX=44689 GN=elmoC PE=4 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-21 Identity = 59/177 (33.33%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 178 VFFDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNIT---FMIMQMLDLDATKPMTFVR------AVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLKRTRLQLEK 681
++++ DH++ L+ LWS +P QE Q S WK+ G+Q DP+ DFRG G + L NL+ + + Q IL + +YPFA AG+NI+ F + Q+ + +P A+ M N+ AF+ LY + F ++D W + NATYM F V+K+ + QL +
Sbjct: 374 TIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDR------DYPFAVAGINISNLIFEVFQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMMFPLVIKKLKSQLNE 543
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD2_HUMAN (ELMO domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ELMOD2 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.712e-19 Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQW-RERNATYMEFN 645
+D+ L H++ L LW+ P ++L + IS QW E+G+QG DP TDFRG G + L NL++F++ ++ +IL + Y +A G+N+T M +L +A K + + + F YC DK W E + M FN
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKL--GYSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPTMEH----FHQFYCYLVYEFDKFWFEEEPESIMYFN 268
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD2_BOVIN (ELMO domain-containing protein 2 OS=Bos taurus OX=9913 GN=ELMOD2 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.464e-18 Identity = 51/155 (32.90%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQW-RERNATYMEFN 645
+D+ L H+ L LW+ P ++L++ IS QW ++G+QG DP TDFRG G + L NL++F++ ++ +IL + Y +A G+N+T M +L +A K F F+ + E F YC DK W E+ + M FN
Sbjct: 120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKL--GYSYAIVGINLTEMAYSLLKSEALK---FHLYNFVPGIPTME-HFHQFYCYLVYEFDKFWFEEKPESIMYFN 268
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOD_DICDI (Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum OX=44689 GN=elmoD PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.723e-18 Identity = 48/152 (31.58%), Postives = 80/152 (52.63%), Query Frame = 1 Query: 205 HQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNIT-FMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLK 657
HQ L LWS FP Q Q + W+ +G+Q +DPS+DFRG G L++L++ A+ F L + + YP+A +G+ +T F++ + ++ + + V +L E+E A + +YCV + W++ NATYM F V +
Sbjct: 308 HQRLLETLWSTLFPNQVFQR-SHENWQIIGFQNKDPSSDFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY--YPYATSGIQVTSFLVECVKPINISANHSDVIGQIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD2_MOUSE (ELMO domain-containing protein 2 OS=Mus musculus OX=10090 GN=Elmod2 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.981e-18 Identity = 51/170 (30.00%), Postives = 84/170 (49.41%), Query Frame = 1 Query: 184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLKRTRLQLEKELLM 693
+D++ H+ L LWS P ++L + IS QW ++G+QG DP TDFRG G + L NL++F++ ++ +IL + Y +A G+N+T M +L +A K + F+ + E F YC DK W E + + ++ + + K LLM
Sbjct: 120 YDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKL--GYSYAIVGINLTEMAYSLLKSEALKLHLY---NFVPGVPTME-HFHQFYCYLVYEFDKFWLEEEPESIMYFNLYREKFHERIKGLLM 283
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD1_PONAB (ELMO domain-containing protein 1 OS=Pongo abelii OX=9601 GN=ELMOD1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.596e-17 Identity = 62/189 (32.80%), Postives = 88/189 (46.56%), Query Frame = 1 Query: 184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRIL------KKQGGKGAIWE---------YPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNAT-YMEFNDVLKRTRLQLEKELLMGDV 702
+D+ H++ L LW P L+S IS QW E+G+QG DP TDFRG G + L NL +FA+ + + Q++L K A WE Y FA G+NIT + +L A K + A LS F +C K W E + MEFN V ++ R ++ K+L D+
Sbjct: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 311
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD1_BOVIN (ELMO domain-containing protein 1 OS=Bos taurus OX=9913 GN=ELMOD1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 6.506e-17 Identity = 62/189 (32.80%), Postives = 88/189 (46.56%), Query Frame = 1 Query: 184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRIL------KKQGGKGAIWE---------YPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNAT-YMEFNDVLKRTRLQLEKELLMGDV 702
+D+ H++ L LW P L+S IS QW E+G+QG DP TDFRG G + L NL +FA+ + + Q++L K A WE Y FA G+NIT + +L A K + A LS F +C K W E + MEFN V ++ R ++ K+L D+
Sbjct: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 311
BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD1_HUMAN (ELMO domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ELMOD1 PE=2 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 3.801e-16 Identity = 63/197 (31.98%), Postives = 91/197 (46.19%), Query Frame = 1 Query: 184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRIL------------KKQGGK--GAIWE---------YPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNAT-YMEFNDVLKRTRLQLEKELLMGDV 702
+D+ H++ L LW P L+S IS QW E+G+QG DP TDFRG G + L NL +FA+ + + Q++L K++ K A WE Y FA G+NIT + +L A K + A LS F +C K W E + MEFN V ++ R ++ K+L D+
Sbjct: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 319 The following BLAST results are available for this feature:
BLAST of rna-KK1_019879 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879; organism=Cajanus cajan; type=mRNA; length=744bpback to top protein sequence of rna-KK1_019879_Cc_Asha_v1.0 >rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=247bpback to top mRNA from alignment at Chr_1-CM003603.1:1499507..1502623- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879; organism=Cajanus cajan; type=mRNA; length=3117bp; location=Sequence derived from: Chr_1-CM003603.1:1499507..1502623- (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1499507..1502623- >rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879; organism=Cajanus cajan; type=CDS; length=1488bp; location=Sequence derived from: Chr_1-CM003603.1:1499507..1502623- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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