rna-KK1_019879

Transcript Overview


Name	rna-KK1_019879
Unique Name	rna-KK1_019879_Cc_Asha_v1.0
Type	mRNA
Organism	Cajanus cajan (pigeon pea)
Sequence length	744
Product	ELMO domain-containing protein A

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_1-CM003603.1	supercontig	Chr_1-CM003603.1:1499507..1502623 -	Cajanus cajan Asha genome v1.0	n/a
Chr_1-CM003603.1	supercontig	Chr_1-CM003603.1:1499507..1502623 -	Cajanus cajan Asha genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cajanus cajan Asha genome v1.0	2019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccrR0011	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cccrR0043	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ccpsR022	Pisum sativum Cameor genome v1a	Pisum sativum
ccpsR024	Pisum sativum Cameor genome v1a	Pisum sativum
ccpsR033	Pisum sativum Cameor genome v1a	Pisum sativum
ccccR001	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccpvR0004	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccvuR0003	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
ccvuR0016	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caiccL0515	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caiccL0518	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caiccL0673	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caccL0156	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caccL0552	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caccL0721	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccL0002	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0005	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0259	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0379	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0433	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0833	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0912	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asccL0007	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
cctifR0010	Vicia faba cv. Tiffany genome v1.0	Vicia faba
cctifR0036	Vicia faba cv. Tiffany genome v1.0	Vicia faba
ccvfhR0010	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvfhR0039	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvrvR0014	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
ccvssR0010	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ccvuaR0003	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ccvssR0042	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ccvuaR0020	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canccL0553	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canccL0728	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjccL0331	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjccL0697	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carccL0594		Cicer arietinum
carccL0777		Cicer arietinum
ccccaR0000	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccccaR0054	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccvumR0009	Vigna umbellata FF25 genome v1.0	Vigna umbellata
ccvumR0042	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Orthologs


Gene/Transcript	Assembly	Species
Ca_11342	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vigun01g246500.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Ca_13625.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
evm.model.Chr01.2316	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Phvul.001G261100.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vfaba.Tiffany.R1.2g091560.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Va03G085210.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
jg53556.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-XM_012716365.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Psat5g095360.3	Pisum sativum Cameor genome v1a	Pisum sativum
rna-XM_022778811.1	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vum_04G03219.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vfaba.Hedin2.R1.2g111480.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cc_v2.0_00092.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KK1_019879	gene-KK1_019879_Cc_Asha_v1.0	Cajanus cajan	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_019879	rna-KK1_019879_Cc_Asha_v1.0-protein	Cajanus cajan	polypeptide
rna-KK1_019879_Cc_Asha_v1.0	rna-KK1_019879_Cc_Asha_v1.0	Cajanus cajan	polypeptide

The following CDS feature(s) are a part of this mRNA:

The following exon feature(s) are a part of this mRNA:

Homology

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOA_DICDI (ELMO domain-containing protein A OS=Dictyostelium discoideum OX=44689 GN=elmoA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.689e-26
Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 1

Query:  178 VFFDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAV------------------FLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLKRTR 666
            V F+    +H   L  LWS ++PG +L+S +S+QWK+MG+QG DP TDFR  G   L+NL++FA+ ++  F++I+  Q  +    EYP A AG+ +TF +   +    T  +    +                   F  +   +  AF+ +YC  F ++D  W + N TYM F  ++   +
Sbjct:  375 VTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRKE-REYPTATAGIVLTFELYNSIFKMGTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMNGTYMHFQKIMSSVK 554

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOB_DICDI (ELMO domain-containing protein B OS=Dictyostelium discoideum OX=44689 GN=elmoB PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.123e-23
Identity = 54/176 (30.68%), Postives = 91/176 (51.70%), Query Frame = 1

Query:  184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNA-TYMEFNDVLKRTRLQLEKELLMGDVLR 708
            +D + L+H+ +L  LW A  P     + +S +W  +G+QG DP+TDFRG G + L+NL++F+   S   + ILK    K     YPFA  G+NIT +++ ++D    K   F     L   +E       LY + F+  D+ ++ +   + MEFN + K    ++ +   +  +LR
Sbjct:  118 YDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLIDKPHFKIYFFKNGSTLTQFNE-------LYSLVFISFDRFYQSKKPKSIMEFNTIKKEFETKISQNSDLVQLLR 283

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOC_DICDI (ELMO domain-containing protein C OS=Dictyostelium discoideum OX=44689 GN=elmoC PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-21
Identity = 59/177 (33.33%), Postives = 93/177 (52.54%), Query Frame = 1

Query:  178 VFFDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNIT---FMIMQMLDLDATKPMTFVR------AVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLKRTRLQLEK 681
              ++++  DH++ L+ LWS  +P QE Q   S  WK+ G+Q  DP+ DFRG G + L NL+   +  +   Q IL +        +YPFA AG+NI+   F + Q+ +    +P           A+   M   N+ AF+ LY + F ++D  W + NATYM F  V+K+ + QL +
Sbjct:  374 TIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDR------DYPFAVAGINISNLIFEVFQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMMFPLVIKKLKSQLNE 543

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD2_HUMAN (ELMO domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ELMOD2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.712e-19
Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 1

Query:  184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQW-RERNATYMEFN 645
            +D+  L H++ L  LW+   P ++L + IS QW E+G+QG DP TDFRG G + L NL++F++ ++    +IL +         Y +A  G+N+T M   +L  +A K   +     +  +      F   YC      DK W  E   + M FN
Sbjct:  120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKL--GYSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPTMEH----FHQFYCYLVYEFDKFWFEEEPESIMYFN 268

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD2_BOVIN (ELMO domain-containing protein 2 OS=Bos taurus OX=9913 GN=ELMOD2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.464e-18
Identity = 51/155 (32.90%), Postives = 80/155 (51.61%), Query Frame = 1

Query:  184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQW-RERNATYMEFN 645
            +D+  L H+  L  LW+   P ++L++ IS QW ++G+QG DP TDFRG G + L NL++F++ ++    +IL +         Y +A  G+N+T M   +L  +A K   F    F+  +   E  F   YC      DK W  E+  + M FN
Sbjct:  120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKL--GYSYAIVGINLTEMAYSLLKSEALK---FHLYNFVPGIPTME-HFHQFYCYLVYEFDKFWFEEKPESIMYFN 268

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMOD_DICDI (Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum OX=44689 GN=elmoD PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.723e-18
Identity = 48/152 (31.58%), Postives = 80/152 (52.63%), Query Frame = 1

Query:  205 HQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNIT-FMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLK 657
            HQ  L  LWS  FP Q  Q    + W+ +G+Q +DPS+DFRG G   L++L++ A+     F   L  +  +     YP+A +G+ +T F++  +  ++ +   + V      +L E+E A + +YCV   +    W++ NATYM F  V +
Sbjct:  308 HQRLLETLWSTLFPNQVFQR-SHENWQIIGFQNKDPSSDFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY--YPYATSGIQVTSFLVECVKPINISANHSDVIGQIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD2_MOUSE (ELMO domain-containing protein 2 OS=Mus musculus OX=10090 GN=Elmod2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.981e-18
Identity = 51/170 (30.00%), Postives = 84/170 (49.41%), Query Frame = 1

Query:  184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNATYMEFNDVLKRTRLQLEKELLM 693
            +D++   H+  L  LWS   P ++L + IS QW ++G+QG DP TDFRG G + L NL++F++ ++    +IL +         Y +A  G+N+T M   +L  +A K   +    F+  +   E  F   YC      DK W E     + + ++ +    +  K LLM
Sbjct:  120 YDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKL--GYSYAIVGINLTEMAYSLLKSEALKLHLY---NFVPGVPTME-HFHQFYCYLVYEFDKFWLEEEPESIMYFNLYREKFHERIKGLLM 283

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD1_PONAB (ELMO domain-containing protein 1 OS=Pongo abelii OX=9601 GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.596e-17
Identity = 62/189 (32.80%), Postives = 88/189 (46.56%), Query Frame = 1

Query:  184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRIL------KKQGGKGAIWE---------YPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNAT-YMEFNDVLKRTRLQLEKELLMGDV 702
            +D+    H++ L  LW    P   L+S IS QW E+G+QG DP TDFRG G + L NL +FA+  + + Q++L      K      A WE         Y FA  G+NIT +   +L   A K   +  A     LS     F   +C       K W E +    MEFN V ++ R ++ K+L   D+
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 311

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD1_BOVIN (ELMO domain-containing protein 1 OS=Bos taurus OX=9913 GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.506e-17
Identity = 62/189 (32.80%), Postives = 88/189 (46.56%), Query Frame = 1

Query:  184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRIL------KKQGGKGAIWE---------YPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNAT-YMEFNDVLKRTRLQLEKELLMGDV 702
            +D+    H++ L  LW    P   L+S IS QW E+G+QG DP TDFRG G + L NL +FA+  + + Q++L      K      A WE         Y FA  G+NIT +   +L   A K   +  A     LS     F   +C       K W E +    MEFN V ++ R ++ K+L   D+
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 311

[Close]

BLAST of rna-KK1_019879 vs. DB:Swiss
Match: ELMD1_HUMAN (ELMO domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ELMOD1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 3.801e-16
Identity = 63/197 (31.98%), Postives = 91/197 (46.19%), Query Frame = 1

Query:  184 FDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQRIL------------KKQGGK--GAIWE---------YPFAAAGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVMDKQWRERNAT-YMEFNDVLKRTRLQLEKELLMGDV 702
            +D+    H++ L  LW    P   L+S IS QW E+G+QG DP TDFRG G + L NL +FA+  + + Q++L            K++  K   A WE         Y FA  G+NIT +   +L   A K   +  A     LS     F   +C       K W E +    MEFN V ++ R ++ K+L   D+
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 319

The following BLAST results are available for this feature:

BLAST of rna-KK1_019879 vs. DB:Swiss

BLAST of rna-KK1_019879 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
ELMOA_DICDI	3.689e-26	30.94	ELMO domain-containing protein A OS=Dictyostelium ...	[more]
ELMOB_DICDI	4.123e-23	30.68	ELMO domain-containing protein B OS=Dictyostelium ...	[more]
ELMOC_DICDI	1.322e-21	33.33	ELMO domain-containing protein C OS=Dictyostelium ...	[more]
ELMD2_HUMAN	6.712e-19	31.61	ELMO domain-containing protein 2 OS=Homo sapiens O...	[more]
ELMD2_BOVIN	1.464e-18	32.90	ELMO domain-containing protein 2 OS=Bos taurus OX=...	[more]
ELMOD_DICDI	3.723e-18	31.58	Ankyrin repeat and ELMO domain-containing protein ...	[more]
ELMD2_MOUSE	9.981e-18	30.00	ELMO domain-containing protein 2 OS=Mus musculus O...	[more]
ELMD1_PONAB	4.596e-17	32.80	ELMO domain-containing protein 1 OS=Pongo abelii O...	[more]
ELMD1_BOVIN	6.506e-17	32.80	ELMO domain-containing protein 1 OS=Bos taurus OX=...	[more]
ELMD1_HUMAN	3.801e-16	31.98	ELMO domain-containing protein 1 OS=Homo sapiens O...	[more]

InterPro

Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006816	ELMO domain	PFAM	PF04727	ELMO_CED12	coord: 53..218 e-value: 8.4E-48 score: 162.8
IPR006816	ELMO domain	PROSITE	PS51335	ELMO	coord: 68..229 score: 28.414

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_1-CM003603.1:1499507..1502623-
coding sequence from alignment at Chr_1-CM003603.1:1499507..1502623-

mRNA sequence

>rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879; organism=Cajanus cajan; type=mRNA; length=744bp
ATGGGGAAATCTCCTGATTGGTTGTATACAGATCATGCAACATGTGGCTC
CTCCGCGTGGATTGGTAAAGGATTCACTTGTGTTTGCTTCAAGCGAAAGG
GAAACTATCAACGAATCTGCTATAGCTTAACCCCTTTACAGGAGGAAAGA
CTGAGAAGACTAAAGCGCCGAATGAAAGTTTTCTTTGATGCTTCTAGGCT
TGATCACCAGGATGCATTGAGAGCTCTGTGGTCTGCTTCGTTCCCTGGTC
AGGAGCTCCAAAGCTTGATTTCTGACCAATGGAAAGAAATGGGATGGCAG
GGTAGAGATCCATCTACTGATTTCAGAGGAGCTGGTTTCATTTCTTTGGA
GAACTTACTATTCTTTGCAAAGACATTCTCAATTTCTTTTCAGCGCATAT
TGAAGAAACAAGGAGGAAAAGGAGCTATTTGGGAGTATCCCTTTGCTGCT
GCTGGGGTTAATATCACATTTATGATCATGCAAATGCTGGACCTTGATGC
TACCAAACCCATGACTTTTGTAAGAGCAGTTTTTTTACAGATGCTTTCAG
AAAATGAGTGGGCATTCGACTTGCTTTATTGCGTGGCATTCGTGGTTATG
GACAAACAGTGGCGGGAGAGGAATGCTACATATATGGAATTTAATGATGT
CTTGAAACGCACGCGACTTCAGCTAGAGAAAGAGTTGTTGATGGGTGATG
TTCTACGGATTGAAGACATGCCTTCTTTCAGTCTTCTTTTTTGA

protein sequence of rna-KK1_019879_Cc_Asha_v1.0

>rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=247bp
MGKSPDWLYTDHATCGSSAWIGKGFTCVCFKRKGNYQRICYSLTPLQEER
LRRLKRRMKVFFDASRLDHQDALRALWSASFPGQELQSLISDQWKEMGWQ
GRDPSTDFRGAGFISLENLLFFAKTFSISFQRILKKQGGKGAIWEYPFAA
AGVNITFMIMQMLDLDATKPMTFVRAVFLQMLSENEWAFDLLYCVAFVVM
DKQWRERNATYMEFNDVLKRTRLQLEKELLMGDVLRIEDMPSFSLLF

mRNA from alignment at Chr_1-CM003603.1:1499507..1502623-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879; organism=Cajanus cajan; type=mRNA; length=3117bp; location=Sequence derived from: Chr_1-CM003603.1:1499507..1502623- (Cajanus cajan
ATGGGGAAATCTCCTGATTGGTTGTATACAGATCATGCAACATGTGGCTC
CTCCGCGTGGATTGGTAAAGGATTCACTTGTGTTTGCTTCAAGCGAAAGG
GAAACTATCAACGAATCTGCTATAGCTTAACCCCTTTACAGGTTGGTGAT
TTACAAACTACACATTGTTGTTTTACTTCATTGTCTAGTTGTAGTTTTCT
ACTTATATTAGTGTTGTATAATTTTTAAGCCTTTTAATTTATTGAAGTGT
TCAGTTTTGGTTTTTGAGTTGCATTTCTTCTATAAGATTACTCTCCTAGC
CAGGACTTTATCAAATTTGACTTGAACCCGTTTTACTGCTTTGTTATACT
CTTCATAAGCTTGAATGCTAGCTTCATGGTTTAGGGTGTTTTCATTGTGC
TTATTTAACGATCGTTTAAAATAGAAAATCCTCTTCTTGAGTTACACGTT
GTGTCTCTCTGCCAGTTCAAGAAGTTGAACTGCTTGTATATCCACCCTTT
CCACTCTTCTCAAAGGCTGCAATTTACAAATGTGTAACTATCTCAATGAC
AACTTGCAGCATTTGTGAAAATGTTTTTCTAAAATAACAAGAAACTTTTG
GTAACAAACAAACTTGTAATAGTTTTTGAAGGTAATTGAAAAACGTGATC
GAGTTTCATATTATTCAAAATCTTGTTTTGTTTTCTAGGAATAATTGCGA
AAACAATTGTTGAAAACGCATTCAAAATTTGTTTCCCAACTTTATGGTGT
TTTCCATCACAAATGGTTTAATAGGTTTTTTTTTTTTTCTTTACTTTTCC
TCATATATTTTCTTGTCATGAATTCATTGAGGATAGAGAGCGGTGAGGAA
AACAATAAAAAGAAATAGAAAAGTGAATTCATTGAGCAGCAACTTTGTAA
AATTTTGTAGGAGGAAAGACTGAGAAGACTAAAGCGCCGAATGAAAGTTT
TCTTTGATGCTTCTAGGCTTGATCACCAGGTATAAATTCGGCAACTTTTG
GTTCCAACATATATCTTAGTGTTATTATTTTCCTTTGCATTGGGGCAACC
ATCATTTGCTGAGGGATTCACCGCAATACTATTCTCAGTTAAATTTATAC
CTGCAAAATTGATGGTACAAGCCAAATTTAGCAATATTGAAAAAAAATTA
TTTATTCGCATCATTTTAGCCTTCTTTTGTAAGTTACTCATCCATAAATT
CTTTCAAGGACAGGATGCATTGAGAGCTCTGTGGTCTGCTTCGTTCCCTG
GTCAGGAGCTCCAAAGCTTGATTTCTGACCAATGGAAAGAAATGGGATGG
CAGGGTAGAGATCCATCTACTGATTTCAGGTTATATTTTACCTTATCACT
CTTTTCTTATGTTTCTGTGTTGTTTTCGCTCTTTACATATTTTTTTTGGT
TTCATTTCATGAACAGAGGAGCTGGTTTCATTTCTTTGGAGAACTTACTA
TTCTTTGCAAAGACATTCTCAGTAAGATTCTGAACTAGCTACTATCTTTT
GGTGGTACGAGTTCTATCTTGTAGTCTGTTTGGATATAATTTTAGAATAA
CTTTTGAGAGCTTTTCTATTGAAAACAAAGAGTTTTTTTTTTTTTTTTTT
TTTTTTTTTCTAATAGAAAATGTCTCAAAAGCACTTATAAGTTTGTATCC
ATTTAGACTCTTAGACTCCCAAAATGAAAATATCCGGATCCACATCTTGA
GTTCTTGACTTTAAGCAAAAGACTAACAAGGTCATTGATTTTTCTAAACA
CCAGTGTAACATTTTATTGATGACAGAAATAAGTGTTTTTGCTCCGAATT
CTGCCTACAAATAATTTATTGACTTGTATTGATGTTCCTCAACTTGTTGC
AGATTTCTTTTCAGCGCATATTGAAGAAACAAGGAGGAAAAGGAGCTATT
TGGGAGTATCCCTTTGCTGCTGCTGGGGTTAATATCACATTTATGATCAT
GCAAATGCTGGACCTTGATGCTAGTATGTCATGAAAAGCATTTTGCACCA
AAAGATAGTTGTTGATTTATTTTAGTCACACATTCTCCCATTTGGTTAAA
CACGAGTCTTGTGGCCTAAGTTTCCTACGAAATTCAAATTAAATAATACT
CTAATCTTGATGTGTGAATTATGTTCTGGATGTGATTGCTTTGTACCGTT
AACCTTAACATCTCTTGTGTTAATCCCTCTTGCAAGTAATTATGTCTTTT
GTTTATCATAAAATAAATTATACTCTGTTCTTAAAGGGGATGGAATTTGT
CATCTGAATTGCAACAAATTTTCTAATGCTGAGTTGTTTATTCATTTGCA
GCCAAACCCATGACTTTTGTAAGAGCAGTTTTTTTACAGATGCTTTCAGG
TTAGATTCAGCAATTGATTTTGACCTTTTTGTTATATTTTGCCTTGGGAA
GGTTTGCTTGTATTAATCCTTATTTTAAGCCTATGCCTTCATTCTTGATA
TATCTCCGTTCCTAATTTGTACACGAGAATGTTTTGAGATATTATCTTTT
GGAGTAATTATACACTTACATCATTTTTTTTATGTTTATCTCTATTCATT
ATTAATAACTATAATAACTGATGTGATAGAGAGAGATAAACAAAAAAAAA
AAATTAATGTTGTAGAAGTATCATTTCCTTATCTTTTATAACATTTACCT
AAGTATTCCAAAGTGTTATCTAGCCCTTATTCTATTATTCTCATACATTT
GCAGAAAATGAGTGGGCATTCGACTTGCTTTATTGCGTGGCATTCGTGGT
TATGGACAAACAGTGGCGGGAGAGGAATGCTACATATATGGAATTTAATG
TAAGAATATTTTATGTGCTTTTTAAGCATGGTTTATACATAAAATGCCGT
TTGTCAGTATGATACGTTGATACATGGGCCAAACAATGGATGCATATGTA
AATTTTTGAGTACTTTATTAAAGGATAGAACTTAGATATCTATAATTTTA
TTTTCCAGTCAAAATTAGAGTTTTACTTCAGTATTACGCGTGATTAAATA
ATTTTTTTTTTATTACAGGATGTCTTGAAACGCACGCGACTTCAGCTAGA
GAAAGAGTTGTTGATGGGTGATGTTCTACGGATTGAAGACATGCCTTCTT
TCAGTCTTCTTTTTTGA

Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1499507..1502623-

>rna-KK1_019879_Cc_Asha_v1.0 ID=rna-KK1_019879_Cc_Asha_v1.0; Name=rna-KK1_019879; organism=Cajanus cajan; type=CDS; length=1488bp; location=Sequence derived from: Chr_1-CM003603.1:1499507..1502623- (Cajanus cajan
ATGGGGAAATCTCCTGATTGGTTGTATACAGATCATGCAACATGTGGCTC
CTCCGCGTGGATTGGTAAAGGATTCACTTGTGTTTGCTTCAAGCGAAAGG
GAAACTATCAACGAATCTGCTATAGCTTAACCCCTTTACAGATGGGGAAA
TCTCCTGATTGGTTGTATACAGATCATGCAACATGTGGCTCCTCCGCGTG
GATTGGTAAAGGATTCACTTGTGTTTGCTTCAAGCGAAAGGGAAACTATC
AACGAATCTGCTATAGCTTAACCCCTTTACAGGAGGAAAGACTGAGAAGA
CTAAAGCGCCGAATGAAAGTTTTCTTTGATGCTTCTAGGCTTGATCACCA
GGAGGAAAGACTGAGAAGACTAAAGCGCCGAATGAAAGTTTTCTTTGATG
CTTCTAGGCTTGATCACCAGGATGCATTGAGAGCTCTGTGGTCTGCTTCG
TTCCCTGGTCAGGAGCTCCAAAGCTTGATTTCTGACCAATGGAAAGAAAT
GGGATGGCAGGGTAGAGATCCATCTACTGATTTCAGGATGCATTGAGAGC
TCTGTGGTCTGCTTCGTTCCCTGGTCAGGAGCTCCAAAGCTTGATTTCTG
ACCAATGGAAAGAAATGGGATGGCAGGGTAGAGATCCATCTACTGATTTC
AGAGGAGCTGGTTTCATTTCTTTGGAGAACTTACTATTCTTTGCAAAGAC
ATTCTCAAGGAGCTGGTTTCATTTCTTTGGAGAACTTACTATTCTTTGCA
AAGACATTCTCAATTTCTTTTCAGCGCATATTGAAGAAACAAGGAGGAAA
AGGAGCTATTTGGGAGTATCCCTTTGCTGCTGCTGGGGTTAATATCACAT
TTATGATCATGCAAATGCTGGACCTTGATGCTAATTTCTTTTCAGCGCAT
ATTGAAGAAACAAGGAGGAAAAGGAGCTATTTGGGAGTATCCCTTTGCTG
CTGCTGGGGTTAATATCACATTTATGATCATGCAAATGCTGGACCTTGAT
GCTACCAAACCCATGACTTTTGTAAGAGCAGTTTTTTTACAGATGCTTTC
AGCCAAACCCATGACTTTTGTAAGAGCAGTTTTTTTACAGATGCTTTCAG
AAAATGAGTGGGCATTCGACTTGCTTTATTGCGTGGCATTCGTGGTTATG
GACAAACAGTGGCGGGAGAGGAATGCTACATATATGGAATTTAATAAAAT
GAGTGGGCATTCGACTTGCTTTATTGCGTGGCATTCGTGGTTATGGACAA
ACAGTGGCGGGAGAGGAATGCTACATATATGGAATTTAATGATGTCTTGA
AACGCACGCGACTTCAGCTAGAGAAAGAGTTGTTGATGGGTGATGTTCTA
CGGATTGAAGACATGCCTTCTTTCAGTCTTCTTTTTTGAGATGTCTTGAA
ACGCACGCGACTTCAGCTAGAGAAAGAGTTGTTGATGGGTGATGTTCTAC
GGATTGAAGACATGCCTTCTTTCAGTCTTCTTTTTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006816	ELMO_dom

Search form