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Transcript Overview
Name | rna-KK1_019900 |
Unique Name | rna-KK1_019900_Cc_Asha_v1.0 |
Type | mRNA |
Organism | Cajanus cajan (pigeon pea) |
Sequence length | 483 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-KK1_019900 | rna-KK1_019900_Cc_Asha_v1.0-protein | Cajanus cajan | polypeptide |
rna-KK1_019900_Cc_Asha_v1.0 | rna-KK1_019900_Cc_Asha_v1.0 | Cajanus cajan | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 | Cajanus cajan | CDS |
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 | rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 | Cajanus cajan | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 | Cajanus cajan | exon |
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 | rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 | Cajanus cajan | exon |
Homology
BLAST of rna-KK1_019900 vs. DB:Swiss
Match: YUID_BACSU (Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) OX=224308 GN=yuiD PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.278e-24 Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 34 MMRNYPLISAIVAFAIAQFIKFFTAWYKEKRWDPKQLIGSGGMPSSHSATVTALAAAIGFHEGFGGPLFATALVLALIVMYDATGVRLQAGRQAELLNQIVF----------ELPAEHXXXXXXXXXXXXGHTPPQVIAGGILG-LVTAAIGYL 462
++ N+PL+S++ A AQ IK + ++ D + +GGMPSSHSA VTAL+ + G LFA + + A+I M+DATGVR AG QA ++N++V + P + + L+ELLGH P +V GG+ G L+T + Y
Sbjct: 3 LLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVLAYF 156
The following BLAST results are available for this feature:
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR003832 | Protein of unknown function DUF212 | PFAM | PF02681 | DUF212 | coord: 14..147 e-value: 1.7E-49 score: 167.2 |
None | No IPR available | CDD | cd01610 | PAP2_like | coord: 18..153 e-value: 0.00592974 score: 32.8175 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=mRNA; length=483bp ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT TCACCGCCTGGTATAAGGAAAAAAGATGGGATCCGAAGCAACTTATTGGA TCTGGTGGAATGCCTTCGTCCCATTCAGCTACTGTCACTGCTCTTGCCGC TGCAATTGGGTTCCATGAAGGCTTTGGAGGGCCTCTTTTTGCTACAGCTT TGGTTCTGGCTCTTATTGTGATGTATGATGCTACTGGTGTAAGGTTGCAA GCGGGACGCCAAGCAGAGCTTTTGAACCAAATTGTGTTCGAACTTCCTGC TGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGAACTTCTTGGGCATA CCCCTCCTCAGGTCATTGCCGGGGGGATACTTGGACTTGTAACAGCAGCT ATTGGCTATCTAATAACCATGACTAGTAGTTGA back to topprotein sequence of rna-KK1_019900_Cc_Asha_v1.0 >rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=160bp MSEVAATTSSSMMRNYPLISAIVAFAIAQFIKFFTAWYKEKRWDPKQLIG SGGMPSSHSATVTALAAAIGFHEGFGGPLFATALVLALIVMYDATGVRLQ AGRQAELLNQIVFELPAEHPLPESRPLRELLGHTPPQVIAGGILGLVTAA IGYLITMTSS back to topmRNA from alignment at Chr_1-CM003603.1:1622751..1625100- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=mRNA; length=2350bp; location=Sequence derived from: Chr_1-CM003603.1:1622751..1625100- (Cajanus cajan ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC
TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT
TCACCGCCTGGTTTGTTCCTTTTTCCTTTCTATTGTCTAGTGCTGGGTTT
GGATCACAATTGAATGCAATAGTTTAGAAAAAAAAAAGTTTTTTTTTTTC
TTCTATTTTTGAGGTTTTTGGTTTGGCTAATTATATGTCAATTTTAACTA
TGGTTAATTGAGGGTTGGTTAATTAATGTTGTTATTGTGAAGGTATAAGG
AAAAAAGATGGGATCCGAAGCAACTTATTGGATCTGGTGGAATGCCTTCG
TCCCATTCAGCTACTGTCACTGCTCTTGCCGCTGCAATTGGGTTCCATGA
AGGCTTTGGAGGGCCTCTTTTTGCTACAGCTTTGGTTCTGGCTCTTATTG
TATGTCTTTGTTCTTCAAATCAATCATTTTGTGGAGATTTCATGAAGGGC
TTGGTGTTTTTTCTTTGTTACAAAGTGTGGTATTATGTTGGAGATTCAAT
TCAACCTATTCTATTTTTCATGTCTACACTTGTGGGAATGGACATGTGTG
TGTATTGTGTAGTTTGCAATTGCATGGCTTATGTTTGGATTGATAGAAAA
GGAATGACTGGAATGAATTGAAATGTTACTTGGTTCAATAGTTCAAAAAA
TAGGATGAAATGGAATGGAACTAATGGGGGATACATTCCAAGCCACGTAA
TTCAATACTCCTCCTTTTCTTCCCTTCCAGTTTGGAGGGTACTAGCTAGA
TCTTTTATTTTTGTTTTACCTTAAAATATCCAAACAAAAGAATGGTAGCT
TTATTTCATTTCATTCTACTTATGCCTTGATATCCAAATATGGTCGCTGT
TATGAAAGGATTTGATGTCCTAAAAACTAGGTTAGACAATGAGAAAATTT
TTCATAGGTTATATGGTTGGACAAGTTTCTGATATGGGATATTGCCTGCA
GGTGATGTATGATGCTACTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAG
AGGTTTGTTGCCTTGTGTTGTTAGTTTATTTTTCACCTAGGACACTTTGT
CTTTGCTTTACTTGTGCACCATATTCTGTCCTATGCAATTCTTTCATGCC
AAACATGAGATTTGAAAGGCCACAGAAGCTTTTTCTGTTTGCCTACGGTT
ACAGAGAAAGATGTCTTTTATTTTTTCGTTTTGGTTGATTTCAATTTCTT
TTAACTGAAATTAAATGACTGGATTTTTGCAGCTTTTGAACCAAATTGTG
TTCGAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGA
ACTTCTTGGGCATACCCCTCCTCAGGTTCACCATTTTGTATTTGATTGCC
TCTTATGATTATTTGATGGGTCTATGTCAAAGGAATTTAGCATGTCATTA
GCTTGTAAACTTCATAGAATGACATTATTTTCTTGAAACCTGTAAACATA
GGGATTTTGATGTATGATAACTGTTTATGCTTAAAATATAATTAAAGAGC
ACTATGTTGTTTACTCAATGTGTGACTGCTACTGATTGAGAAAACTAGGT
AATGATTGTATTGTTATTTGTCAGGAATGGATTCTCAATTGAGATTTTCA
CTTAGATTTTCTACATTGAAAGTCCCCACTATCAAAATTCCATACCTTTT
TTTATTATTTAAATTCTATCTTTGTTGTTTTTAAGAAAAAAAATGTTGCA
TGAGGGGATCCAAACCCTTATTTGTCTTTAATGAACATTAAAGTCTATGT
TTTATCATGTTATATTATGCTTTCTTTGAGATGTTATGGGCTGAGATTTT
CCTTGGGATATATATACATATCAGGATTCTATCATACTCATAATATCTTA
CATGGTAGTACTAAGTGAACGATGCGCCTGTCCATACAGCATACATAGAT
AATAATGTGCCAAAACGATGGTTTCAAATCATTAACAAGGTTATAGCATT
TTCATTGACACATATTTTGGAAAGGCTCTGCTTCACTTATGGTTTGAATT
ATTTCCAGTTCTTCAAGTCTATTTGTATCTCATTTATGGTCATAGCATTC
TCCTTGGGTTATATATTTTGTATATTCCTTGGGAAAAAAGGAAGGTCAAA
TAGGTATTCCAGTATTATAGATAAAATGGTTTCATGATATGAGTGTGTGA
ATTTTGATCTTCGTTGTATTGGCCACTTCTTTTACAAATGGTGGTTTTCT
TTTTTAATATTCTCATTACTTACTGCAGGTCATTGCCGGGGGGATACTTG
GACTTGTAACAGCAGCTATTGGCTATCTAATAACCATGACTAGTAGTTGA
back to topCoding sequence (CDS) from alignment at Chr_1-CM003603.1:1622751..1625100- >rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=CDS; length=966bp; location=Sequence derived from: Chr_1-CM003603.1:1622751..1625100- (Cajanus cajan ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT TCACCGCCTGATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGC GCAATTACCCTCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTC ATCAAGTTTTTCACCGCCTGGTATAAGGAAAAAAGATGGGATCCGAAGCA ACTTATTGGATCTGGTGGAATGCCTTCGTCCCATTCAGCTACTGTCACTG CTCTTGCCGCTGCAATTGGGTTCCATGAAGGCTTTGGAGGGCCTCTTTTT GCTACAGCTTTGGTTCTGGCTCTTATTGTATAAGGAAAAAAGATGGGATC CGAAGCAACTTATTGGATCTGGTGGAATGCCTTCGTCCCATTCAGCTACT GTCACTGCTCTTGCCGCTGCAATTGGGTTCCATGAAGGCTTTGGAGGGCC TCTTTTTGCTACAGCTTTGGTTCTGGCTCTTATTGTGATGTATGATGCTA CTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAGAGGTGATGTATGATGCT ACTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAGAGCTTTTGAACCAAAT TGTGTTCGAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCC GGGAACTTCTTGGGCATACCCCTCCTCAGCTTTTGAACCAAATTGTGTTC GAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGAACT TCTTGGGCATACCCCTCCTCAGGTCATTGCCGGGGGGATACTTGGACTTG TAACAGCAGCTATTGGCTATCTAATAACCATGACTAGTAGTTGAGTCATT GCCGGGGGGATACTTGGACTTGTAACAGCAGCTATTGGCTATCTAATAAC CATGACTAGTAGTTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR003832 | DUF212 |
|