rna-KK1_019900

Transcript Overview


Name	rna-KK1_019900
Unique Name	rna-KK1_019900_Cc_Asha_v1.0
Type	mRNA
Organism	Cajanus cajan (pigeon pea)
Sequence length	483
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_1-CM003603.1	supercontig	Chr_1-CM003603.1:1622751..1625100 -	Cajanus cajan Asha genome v1.0	n/a
Chr_1-CM003603.1	supercontig	Chr_1-CM003603.1:1622751..1625100 -	Cajanus cajan Asha genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cajanus cajan Asha genome v1.0	2019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccrR0011	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cccrR0043	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ccpsR022	Pisum sativum Cameor genome v1a	Pisum sativum
ccpsR024	Pisum sativum Cameor genome v1a	Pisum sativum
ccpsR033	Pisum sativum Cameor genome v1a	Pisum sativum
ccccR001	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccpvR0004	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccpvR0019	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccvuR0003	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
ccvuR0016	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caiccL0518	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caiccL0673	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caccL0156	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caccL0552	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caccL0721	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccL0256	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0379	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0433	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0833	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccL0912	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asccL0009	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asccL0662	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
cctifR0008	Vicia faba cv. Tiffany genome v1.0	Vicia faba
cctifR0010	Vicia faba cv. Tiffany genome v1.0	Vicia faba
cctifR0036	Vicia faba cv. Tiffany genome v1.0	Vicia faba
ccvfhR0010	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvfhR0039	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
ccvrvR0014	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
ccvrvR0038	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
ccvssR0010	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ccvuaR0003	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ccvssR0042	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ccvuaR0020	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canccL0553	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canccL0728	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjccL0331	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjccL0697	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carccL0594		Cicer arietinum
carccL0777		Cicer arietinum
ccccaR0000	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccccaR0054	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccvumR0009	Vigna umbellata FF25 genome v1.0	Vigna umbellata
ccvumR0042	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Orthologs


Gene/Transcript	Assembly	Species
Vum_01G01536.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vum_04G03208.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Ca_11325	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-TanjilR_33001	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-XM_014636662.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Phvul.002G175900.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vigun03g170100.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_027334648.1	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
jg53575.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vfaba.Tiffany.R1.2g092360.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-XM_014652687.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun01g245300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Phvul.001G259700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Ca_13727.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vfaba.Hedin2.R1.2g112400.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Psat5g094560.1	Pisum sativum Cameor genome v1a	Pisum sativum
LR48_mrnaVigan03g314100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Va01G038540.2	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Cr_13035.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
evm.model.Chr01.2308	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan01g094200	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-KK1_025175	Cajanus cajan Asha genome v1.0	Cajanus cajan
Cc_v2.0_00106.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KK1_019900	gene-KK1_019900_Cc_Asha_v1.0	Cajanus cajan	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_019900	rna-KK1_019900_Cc_Asha_v1.0-protein	Cajanus cajan	polypeptide
rna-KK1_019900_Cc_Asha_v1.0	rna-KK1_019900_Cc_Asha_v1.0	Cajanus cajan	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818	Cajanus cajan	CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822	rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822	Cajanus cajan	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818	Cajanus cajan	exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822	rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822	Cajanus cajan	exon

Homology

[Close]

BLAST of rna-KK1_019900 vs. DB:Swiss
Match: YUID_BACSU (Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) OX=224308 GN=yuiD PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.278e-24
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 1

Query:   34 MMRNYPLISAIVAFAIAQFIKFFTAWYKEKRWDPKQLIGSGGMPSSHSATVTALAAAIGFHEGFGGPLFATALVLALIVMYDATGVRLQAGRQAELLNQIVF----------ELPAEHXXXXXXXXXXXXGHTPPQVIAGGILG-LVTAAIGYL 462
            ++ N+PL+S++ A   AQ IK    +   ++ D   +  +GGMPSSHSA VTAL+  +    G    LFA + + A+I M+DATGVR  AG QA ++N++V           + P      + + L+ELLGH P +V  GG+ G L+T  + Y 
Sbjct:    3 LLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVLAYF 156

The following BLAST results are available for this feature:

BLAST of rna-KK1_019900 vs. DB:Swiss

BLAST of rna-KK1_019900 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
YUID_BACSU	7.278e-24	37.01	Uncharacterized membrane protein YuiD OS=Bacillus ...	[more]

InterPro

Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003832	Protein of unknown function DUF212	PFAM	PF02681	DUF212	coord: 14..147 e-value: 1.7E-49 score: 167.2
None	No IPR available	CDD	cd01610	PAP2_like	coord: 18..153 e-value: 0.00592974 score: 32.8175

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_1-CM003603.1:1622751..1625100-
coding sequence from alignment at Chr_1-CM003603.1:1622751..1625100-

mRNA sequence

>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=mRNA; length=483bp
ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC
TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT
TCACCGCCTGGTATAAGGAAAAAAGATGGGATCCGAAGCAACTTATTGGA
TCTGGTGGAATGCCTTCGTCCCATTCAGCTACTGTCACTGCTCTTGCCGC
TGCAATTGGGTTCCATGAAGGCTTTGGAGGGCCTCTTTTTGCTACAGCTT
TGGTTCTGGCTCTTATTGTGATGTATGATGCTACTGGTGTAAGGTTGCAA
GCGGGACGCCAAGCAGAGCTTTTGAACCAAATTGTGTTCGAACTTCCTGC
TGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGAACTTCTTGGGCATA
CCCCTCCTCAGGTCATTGCCGGGGGGATACTTGGACTTGTAACAGCAGCT
ATTGGCTATCTAATAACCATGACTAGTAGTTGA

protein sequence of rna-KK1_019900_Cc_Asha_v1.0

>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=160bp
MSEVAATTSSSMMRNYPLISAIVAFAIAQFIKFFTAWYKEKRWDPKQLIG
SGGMPSSHSATVTALAAAIGFHEGFGGPLFATALVLALIVMYDATGVRLQ
AGRQAELLNQIVFELPAEHPLPESRPLRELLGHTPPQVIAGGILGLVTAA
IGYLITMTSS

mRNA from alignment at Chr_1-CM003603.1:1622751..1625100-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=mRNA; length=2350bp; location=Sequence derived from: Chr_1-CM003603.1:1622751..1625100- (Cajanus cajan
ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC
TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT
TCACCGCCTGGTTTGTTCCTTTTTCCTTTCTATTGTCTAGTGCTGGGTTT
GGATCACAATTGAATGCAATAGTTTAGAAAAAAAAAAGTTTTTTTTTTTC
TTCTATTTTTGAGGTTTTTGGTTTGGCTAATTATATGTCAATTTTAACTA
TGGTTAATTGAGGGTTGGTTAATTAATGTTGTTATTGTGAAGGTATAAGG
AAAAAAGATGGGATCCGAAGCAACTTATTGGATCTGGTGGAATGCCTTCG
TCCCATTCAGCTACTGTCACTGCTCTTGCCGCTGCAATTGGGTTCCATGA
AGGCTTTGGAGGGCCTCTTTTTGCTACAGCTTTGGTTCTGGCTCTTATTG
TATGTCTTTGTTCTTCAAATCAATCATTTTGTGGAGATTTCATGAAGGGC
TTGGTGTTTTTTCTTTGTTACAAAGTGTGGTATTATGTTGGAGATTCAAT
TCAACCTATTCTATTTTTCATGTCTACACTTGTGGGAATGGACATGTGTG
TGTATTGTGTAGTTTGCAATTGCATGGCTTATGTTTGGATTGATAGAAAA
GGAATGACTGGAATGAATTGAAATGTTACTTGGTTCAATAGTTCAAAAAA
TAGGATGAAATGGAATGGAACTAATGGGGGATACATTCCAAGCCACGTAA
TTCAATACTCCTCCTTTTCTTCCCTTCCAGTTTGGAGGGTACTAGCTAGA
TCTTTTATTTTTGTTTTACCTTAAAATATCCAAACAAAAGAATGGTAGCT
TTATTTCATTTCATTCTACTTATGCCTTGATATCCAAATATGGTCGCTGT
TATGAAAGGATTTGATGTCCTAAAAACTAGGTTAGACAATGAGAAAATTT
TTCATAGGTTATATGGTTGGACAAGTTTCTGATATGGGATATTGCCTGCA
GGTGATGTATGATGCTACTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAG
AGGTTTGTTGCCTTGTGTTGTTAGTTTATTTTTCACCTAGGACACTTTGT
CTTTGCTTTACTTGTGCACCATATTCTGTCCTATGCAATTCTTTCATGCC
AAACATGAGATTTGAAAGGCCACAGAAGCTTTTTCTGTTTGCCTACGGTT
ACAGAGAAAGATGTCTTTTATTTTTTCGTTTTGGTTGATTTCAATTTCTT
TTAACTGAAATTAAATGACTGGATTTTTGCAGCTTTTGAACCAAATTGTG
TTCGAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGA
ACTTCTTGGGCATACCCCTCCTCAGGTTCACCATTTTGTATTTGATTGCC
TCTTATGATTATTTGATGGGTCTATGTCAAAGGAATTTAGCATGTCATTA
GCTTGTAAACTTCATAGAATGACATTATTTTCTTGAAACCTGTAAACATA
GGGATTTTGATGTATGATAACTGTTTATGCTTAAAATATAATTAAAGAGC
ACTATGTTGTTTACTCAATGTGTGACTGCTACTGATTGAGAAAACTAGGT
AATGATTGTATTGTTATTTGTCAGGAATGGATTCTCAATTGAGATTTTCA
CTTAGATTTTCTACATTGAAAGTCCCCACTATCAAAATTCCATACCTTTT
TTTATTATTTAAATTCTATCTTTGTTGTTTTTAAGAAAAAAAATGTTGCA
TGAGGGGATCCAAACCCTTATTTGTCTTTAATGAACATTAAAGTCTATGT
TTTATCATGTTATATTATGCTTTCTTTGAGATGTTATGGGCTGAGATTTT
CCTTGGGATATATATACATATCAGGATTCTATCATACTCATAATATCTTA
CATGGTAGTACTAAGTGAACGATGCGCCTGTCCATACAGCATACATAGAT
AATAATGTGCCAAAACGATGGTTTCAAATCATTAACAAGGTTATAGCATT
TTCATTGACACATATTTTGGAAAGGCTCTGCTTCACTTATGGTTTGAATT
ATTTCCAGTTCTTCAAGTCTATTTGTATCTCATTTATGGTCATAGCATTC
TCCTTGGGTTATATATTTTGTATATTCCTTGGGAAAAAAGGAAGGTCAAA
TAGGTATTCCAGTATTATAGATAAAATGGTTTCATGATATGAGTGTGTGA
ATTTTGATCTTCGTTGTATTGGCCACTTCTTTTACAAATGGTGGTTTTCT
TTTTTAATATTCTCATTACTTACTGCAGGTCATTGCCGGGGGGATACTTG
GACTTGTAACAGCAGCTATTGGCTATCTAATAACCATGACTAGTAGTTGA

Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1622751..1625100-

>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=CDS; length=966bp; location=Sequence derived from: Chr_1-CM003603.1:1622751..1625100- (Cajanus cajan
ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC
TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT
TCACCGCCTGATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGC
GCAATTACCCTCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTC
ATCAAGTTTTTCACCGCCTGGTATAAGGAAAAAAGATGGGATCCGAAGCA
ACTTATTGGATCTGGTGGAATGCCTTCGTCCCATTCAGCTACTGTCACTG
CTCTTGCCGCTGCAATTGGGTTCCATGAAGGCTTTGGAGGGCCTCTTTTT
GCTACAGCTTTGGTTCTGGCTCTTATTGTATAAGGAAAAAAGATGGGATC
CGAAGCAACTTATTGGATCTGGTGGAATGCCTTCGTCCCATTCAGCTACT
GTCACTGCTCTTGCCGCTGCAATTGGGTTCCATGAAGGCTTTGGAGGGCC
TCTTTTTGCTACAGCTTTGGTTCTGGCTCTTATTGTGATGTATGATGCTA
CTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAGAGGTGATGTATGATGCT
ACTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAGAGCTTTTGAACCAAAT
TGTGTTCGAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCC
GGGAACTTCTTGGGCATACCCCTCCTCAGCTTTTGAACCAAATTGTGTTC
GAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGAACT
TCTTGGGCATACCCCTCCTCAGGTCATTGCCGGGGGGATACTTGGACTTG
TAACAGCAGCTATTGGCTATCTAATAACCATGACTAGTAGTTGAGTCATT
GCCGGGGGGATACTTGGACTTGTAACAGCAGCTATTGGCTATCTAATAAC
CATGACTAGTAGTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003832	DUF212

Search form