Transcript Overview
Name rna-KK1_019900
Unique Name rna-KK1_019900_Cc_Asha_v1.0
Type mRNA
Organism Cajanus cajan (pigeon pea)
Sequence length 483
Product hypothetical protein
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-KK1_019900 rna-KK1_019900_Cc_Asha_v1.0-protein Cajanus cajan polypeptide
rna-KK1_019900_Cc_Asha_v1.0 rna-KK1_019900_Cc_Asha_v1.0 Cajanus cajan polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 Cajanus cajan CDS
rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 rna-KK1_019900_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 Cajanus cajan CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624991..1625100 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624652..1624808 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1624049..1624099 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1623726..1623818 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1622751..1622822 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624991..1625100 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624652..1624808 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1624049..1624099 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1623726..1623818 Cajanus cajan exon
rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 rna-KK1_019900_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1622751..1622822 Cajanus cajan exon
Homology
BLAST of rna-KK1_019900 vs. DB:Swiss
Match:
YUID_BACSU (Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) OX=224308 GN=yuiD PE=4 SV=1)
HSP 1 Score: 94.3597 bits (233), Expect = 7.278e-24
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 34 MMRNYPLISAIVAFAIAQFIKFFTAWYKEKRWDPKQLIGSGGMPSSHSATVTALAAAIGFHEGFGGPLFATALVLALIVMYDATGVRLQAGRQAELLNQIVF----------ELPAEHXXXXXXXXXXXXGHTPPQVIAGGILG-LVTAAIGYL 462
++ N+PL+S++ A AQ IK + ++ D + +GGMPSSHSA VTAL+ + G LFA + + A+I M+DATGVR AG QA ++N++V + P + + L+ELLGH P +V GG+ G L+T + Y
Sbjct: 3 LLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVLAYF 156
The following BLAST results are available for this feature:
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
50 100 150 200 250 300 350 400 450 Expect = 1.7E-49 / Score = 167.2 Expect = 0.00592974 / Score = 32.8175 Sequence PF02681 cd01610
IPR Term IPR Description Source Source Term Source Description Alignment
IPR003832 Protein of unknown function DUF212 PFAM PF02681 DUF212 coord: 14..147 e-value: 1.7E-49 score: 167.2
None No IPR available CDD cd01610 PAP2_like coord: 18..153 e-value: 0.00592974 score: 32.8175
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=mRNA; length=483bp ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT TCACCGCCTGGTATAAGGAAAAAAGATGGGATCCGAAGCAACTTATTGGA TCTGGTGGAATGCCTTCGTCCCATTCAGCTACTGTCACTGCTCTTGCCGC TGCAATTGGGTTCCATGAAGGCTTTGGAGGGCCTCTTTTTGCTACAGCTT TGGTTCTGGCTCTTATTGTGATGTATGATGCTACTGGTGTAAGGTTGCAA GCGGGACGCCAAGCAGAGCTTTTGAACCAAATTGTGTTCGAACTTCCTGC TGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGAACTTCTTGGGCATA CCCCTCCTCAGGTCATTGCCGGGGGGATACTTGGACTTGTAACAGCAGCT ATTGGCTATCTAATAACCATGACTAGTAGTTGA back to top protein sequence of rna-KK1_019900_Cc_Asha_v1.0
>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=160bp MSEVAATTSSSMMRNYPLISAIVAFAIAQFIKFFTAWYKEKRWDPKQLIG SGGMPSSHSATVTALAAAIGFHEGFGGPLFATALVLALIVMYDATGVRLQ AGRQAELLNQIVFELPAEHPLPESRPLRELLGHTPPQVIAGGILGLVTAA IGYLITMTSS back to top mRNA from alignment at Chr_1-CM003603.1:1622751..1625100-
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=mRNA; length=2350bp; location=Sequence derived from: Chr_1-CM003603.1:1622751..1625100- (Cajanus cajanATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC
TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT
TCACCGCCTG GTTTGTTCCTTTTTCCTTTCTATTGTCTAGTGCTGGGTTT
GGATCACAATTGAATGCAATAGTTTAGAAAAAAAAAAGTTTTTTTTTTTC
TTCTATTTTTGAGGTTTTTGGTTTGGCTAATTATATGTCAATTTTAACTA
TGGTTAATTGAGGGTTGGTTAATTAATGTTGTTATTGTGAAGGTATAAGG
AAAAAAGATGGGATCCGAAGCAACTTATTGGATCTGGTGGAATGCCTTCG
TCCCATTCAGCTACTGTCACTGCTCTTGCCGCTGCAATTGGGTTCCATGA
AGGCTTTGGAGGGCCTCTTTTTGCTACAGCTTTGGTTCTGGCTCTTATT G
TATGTCTTTGTTCTTCAAATCAATCATTTTGTGGAGATTTCATGAAGGGC
TTGGTGTTTTTTCTTTGTTACAAAGTGTGGTATTATGTTGGAGATTCAAT
TCAACCTATTCTATTTTTCATGTCTACACTTGTGGGAATGGACATGTGTG
TGTATTGTGTAGTTTGCAATTGCATGGCTTATGTTTGGATTGATAGAAAA
GGAATGACTGGAATGAATTGAAATGTTACTTGGTTCAATAGTTCAAAAAA
TAGGATGAAATGGAATGGAACTAATGGGGGATACATTCCAAGCCACGTAA
TTCAATACTCCTCCTTTTCTTCCCTTCCAGTTTGGAGGGTACTAGCTAGA
TCTTTTATTTTTGTTTTACCTTAAAATATCCAAACAAAAGAATGGTAGCT
TTATTTCATTTCATTCTACTTATGCCTTGATATCCAAATATGGTCGCTGT
TATGAAAGGATTTGATGTCCTAAAAACTAGGTTAGACAATGAGAAAATTT
TTCATAGGTTATATGGTTGGACAAGTTTCTGATATGGGATATTGCCTGCA
GGTGATGTATGATGCTACTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAG
AG GTTTGTTGCCTTGTGTTGTTAGTTTATTTTTCACCTAGGACACTTTGT
CTTTGCTTTACTTGTGCACCATATTCTGTCCTATGCAATTCTTTCATGCC
AAACATGAGATTTGAAAGGCCACAGAAGCTTTTTCTGTTTGCCTACGGTT
ACAGAGAAAGATGTCTTTTATTTTTTCGTTTTGGTTGATTTCAATTTCTT
TTAACTGAAATTAAATGACTGGATTTTTGCAGCTTTTGAACCAAATTGTG
TTCGAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGA
ACTTCTTGGGCATACCCCTCCTCAG GTTCACCATTTTGTATTTGATTGCC
TCTTATGATTATTTGATGGGTCTATGTCAAAGGAATTTAGCATGTCATTA
GCTTGTAAACTTCATAGAATGACATTATTTTCTTGAAACCTGTAAACATA
GGGATTTTGATGTATGATAACTGTTTATGCTTAAAATATAATTAAAGAGC
ACTATGTTGTTTACTCAATGTGTGACTGCTACTGATTGAGAAAACTAGGT
AATGATTGTATTGTTATTTGTCAGGAATGGATTCTCAATTGAGATTTTCA
CTTAGATTTTCTACATTGAAAGTCCCCACTATCAAAATTCCATACCTTTT
TTTATTATTTAAATTCTATCTTTGTTGTTTTTAAGAAAAAAAATGTTGCA
TGAGGGGATCCAAACCCTTATTTGTCTTTAATGAACATTAAAGTCTATGT
TTTATCATGTTATATTATGCTTTCTTTGAGATGTTATGGGCTGAGATTTT
CCTTGGGATATATATACATATCAGGATTCTATCATACTCATAATATCTTA
CATGGTAGTACTAAGTGAACGATGCGCCTGTCCATACAGCATACATAGAT
AATAATGTGCCAAAACGATGGTTTCAAATCATTAACAAGGTTATAGCATT
TTCATTGACACATATTTTGGAAAGGCTCTGCTTCACTTATGGTTTGAATT
ATTTCCAGTTCTTCAAGTCTATTTGTATCTCATTTATGGTCATAGCATTC
TCCTTGGGTTATATATTTTGTATATTCCTTGGGAAAAAAGGAAGGTCAAA
TAGGTATTCCAGTATTATAGATAAAATGGTTTCATGATATGAGTGTGTGA
ATTTTGATCTTCGTTGTATTGGCCACTTCTTTTACAAATGGTGGTTTTCT
TTTTTAATATTCTCATTACTTACTGCAGGTCATTGCCGGGGGGATACTTG
GACTTGTAACAGCAGCTATTGGCTATCTAATAACCATGACTAGTAGTTGA
back to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1622751..1625100-
>rna-KK1_019900_Cc_Asha_v1.0 ID=rna-KK1_019900_Cc_Asha_v1.0; Name=rna-KK1_019900; organism=Cajanus cajan; type=CDS; length=966bp; location=Sequence derived from: Chr_1-CM003603.1:1622751..1625100- (Cajanus cajan ATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGCGCAATTACCC TCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTCATCAAGTTTT TCACCGCCTGATGAGTGAGGTGGCAGCTACGACGTCGTCTTCAATGATGC GCAATTACCCTCTCATTTCCGCCATTGTTGCTTTCGCCATCGCACAATTC ATCAAGTTTTTCACCGCCTGGTATAAGGAAAAAAGATGGGATCCGAAGCA ACTTATTGGATCTGGTGGAATGCCTTCGTCCCATTCAGCTACTGTCACTG CTCTTGCCGCTGCAATTGGGTTCCATGAAGGCTTTGGAGGGCCTCTTTTT GCTACAGCTTTGGTTCTGGCTCTTATTGTATAAGGAAAAAAGATGGGATC CGAAGCAACTTATTGGATCTGGTGGAATGCCTTCGTCCCATTCAGCTACT GTCACTGCTCTTGCCGCTGCAATTGGGTTCCATGAAGGCTTTGGAGGGCC TCTTTTTGCTACAGCTTTGGTTCTGGCTCTTATTGTGATGTATGATGCTA CTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAGAGGTGATGTATGATGCT ACTGGTGTAAGGTTGCAAGCGGGACGCCAAGCAGAGCTTTTGAACCAAAT TGTGTTCGAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCC GGGAACTTCTTGGGCATACCCCTCCTCAGCTTTTGAACCAAATTGTGTTC GAACTTCCTGCTGAACATCCTCTGCCTGAAAGCAGACCTCTCCGGGAACT TCTTGGGCATACCCCTCCTCAGGTCATTGCCGGGGGGATACTTGGACTTG TAACAGCAGCTATTGGCTATCTAATAACCATGACTAGTAGTTGAGTCATT GCCGGGGGGATACTTGGACTTGTAACAGCAGCTATTGGCTATCTAATAAC CATGACTAGTAGTTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR003832 DUF212