rna-KK1_019936
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana OX=3702 GN=PAF1 PE=1 SV=3) HSP 1 Score: 442.58 bits (1137), Expect = 2.095e-157 Identity = 205/238 (86.13%), Postives = 225/238 (94.54%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIV 714 MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVLACVNKA SELSSHQ+KIFKVD+HIGVAIAGLTADGRVLSRYMRSE IN+++TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERR+E+F SSREDLIKDA++A RE+LQGE L+SS+CT+A++GV EPFH LDQE +Q++IDTFE V Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFEKV 238
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana OX=3702 GN=PAF2 PE=1 SV=2) HSP 1 Score: 440.269 bits (1131), Expect = 1.534e-156 Identity = 203/238 (85.29%), Postives = 226/238 (94.96%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIV 714 MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVLACVNKA SELSSHQ+KIFKVD+HIGVAIAGLTADGRVLSRYMRSE IN+++TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER++E+F SS+EDLIKDA++A RE+LQGE L+SS+CT++V+GV EPFH LDQE++Q++IDTFE V Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFEKV 238
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica OX=39947 GN=PAF1 PE=2 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 2.867e-128 Identity = 178/240 (74.17%), Postives = 208/240 (86.67%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEKLRSSVCTIAVV-----GVGEPFHILDQETVQQLIDTF 705 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSA +GLRS+TH VLA NKA SELSSHQ+K+F+V +H GVA+AGLTADGRVLSR++RSECIN+ + Y++PLPV RL ++LADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERR+E + + E LIKDAL A +E+LQGEKL SS CT+A+V G EPF ++D + +Q++ID+ Sbjct: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSM 240
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum OX=44689 GN=psmA1 PE=3 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 3.945e-94 Identity = 131/238 (55.04%), Postives = 179/238 (75.21%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQG--EKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFE 708 M+RNQYD+D+TT+SP+GR+ Q+EYAMEAVKQG AA+ L+SK VL + +++SEL S+QKKIF VD+H+G+AI+GLTAD R+L YMR+EC NYNY YES + V RLV ++ADK QV TQR +RPYGVGLLVAG D+ GAH+Y CPSGN+++Y++ +IGSRSQ+AKTYLE+ +E+F + E LI L A RE++ + L S +I +VG G+PF I+++ Q ++ E Sbjct: 1 MYRNQYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSELGSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLNLLE 238
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus OX=9913 GN=PSMA1 PE=1 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 6.439e-93 Identity = 132/254 (51.97%), Postives = 175/254 (68.90%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VDNHIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER FM + +L+K L A RE+L E+ L + +I +VG F I D + V ++ E + + P TQPA E Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQP--TQPADE 252
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens OX=9606 GN=PSMA1 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 9.641e-93 Identity = 132/254 (51.97%), Postives = 175/254 (68.90%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VDNHIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER FM + +L+K L A RE+L E+ L + +I +VG F I D + V ++ E + + PA QPA E Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPA--QPADE 252
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus OX=10090 GN=Psma1 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 1.018e-92 Identity = 131/252 (51.98%), Postives = 174/252 (69.05%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPA 753 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VDNHIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER FM + ++L+K L A RE+L E+ L + +I +VG F I D + V +D EE P + QP+ Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGL-----EERPQRKAQPS 247
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii OX=9601 GN=PSMA1 PE=2 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 1.266e-92 Identity = 132/254 (51.97%), Postives = 175/254 (68.90%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VDNHIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER FM + +L+K L A RE+L E+ L + +I +VG F I D + V ++ E + + PA QPA E Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFLEGLEERPQRKAQPA--QPADE 252
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus OX=10116 GN=Psma1 PE=1 SV=2) HSP 1 Score: 277.715 bits (709), Expect = 1.541e-92 Identity = 131/252 (51.98%), Postives = 174/252 (69.05%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPA 753 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VDNHIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER FM + ++L+K L A RE+L E+ L + +I +VG F I D + V +D EE P + QP+ Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGL-----EERPQRKAQPS 247
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis OX=9541 GN=PSMA1 PE=2 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 4.489e-92 Identity = 131/254 (51.57%), Postives = 175/254 (68.90%), Query Frame = 1 Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++H+KKI VDNHIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER FM + +L+K L A RE+L E+ L + +I +VG F I D + V ++ E + + PA QPA E Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPA--QPADE 252 The following BLAST results are available for this feature:
BLAST of rna-KK1_019936 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936; organism=Cajanus cajan; type=mRNA; length=843bpback to top protein sequence of rna-KK1_019936_Cc_Asha_v1.0 >rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=280bpback to top mRNA from alignment at Chr_1-CM003603.1:1883840..1886666- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936; organism=Cajanus cajan; type=mRNA; length=2827bp; location=Sequence derived from: Chr_1-CM003603.1:1883840..1886666- (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1883840..1886666- >rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936; organism=Cajanus cajan; type=CDS; length=1686bp; location=Sequence derived from: Chr_1-CM003603.1:1883840..1886666- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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