rna-KK1_019936

Transcript Overview
Namerna-KK1_019936
Unique Namerna-KK1_019936_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length843
ProductProteasome subunit alpha type-1-A
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1883840..1886666 -Cajanus cajan Asha genome v1.0n/a
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1883840..1886666 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0011Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0023Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0028Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR022Pisum sativum Cameor genome v1aPisum sativum
ccpsR036Pisum sativum Cameor genome v1aPisum sativum
ccpvR0004Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0017Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0036Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0003Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0024Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0517Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0680Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0156Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0552Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0729Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0255Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0379Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0433Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0833Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0912Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0005Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0662Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0008Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0010Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0034Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0008Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0010Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0036Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0014Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0035Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0010Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0003Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0038Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0015Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canccL0154Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0553Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0735Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0001Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0330Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0697Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0160Cicer arietinum
carccL0594Cicer arietinum
carccL0785Cicer arietinum
ccccaR0000Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0050Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0008Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0042Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_00143.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_019936gene-KK1_019936_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019936rna-KK1_019936_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_019936_Cc_Asha_v1.0rna-KK1_019936_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1886316..1886666rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1886316..1886666Cajanus cajanCDS
rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1883840..1884331rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1883840..1884331Cajanus cajanCDS
rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1886316..1886666rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1886316..1886666Cajanus cajanCDS
rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1883840..1884331rna-KK1_019936_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1883840..1884331Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1886316..1886666rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1886316..1886666Cajanus cajanexon
rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1883840..1884331rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1883840..1884331Cajanus cajanexon
rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1886316..1886666rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1886316..1886666Cajanus cajanexon
rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1883840..1884331rna-KK1_019936_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1883840..1884331Cajanus cajanexon


Homology
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana OX=3702 GN=PAF1 PE=1 SV=3)

HSP 1 Score: 442.58 bits (1137), Expect = 2.095e-157
Identity = 205/238 (86.13%), Postives = 225/238 (94.54%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIV 714
            MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVLACVNKA SELSSHQ+KIFKVD+HIGVAIAGLTADGRVLSRYMRSE IN+++TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERR+E+F  SSREDLIKDA++A RE+LQGE L+SS+CT+A++GV EPFH LDQE +Q++IDTFE V
Sbjct:    1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFEKV 238          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana OX=3702 GN=PAF2 PE=1 SV=2)

HSP 1 Score: 440.269 bits (1131), Expect = 1.534e-156
Identity = 203/238 (85.29%), Postives = 226/238 (94.96%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIV 714
            MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVLACVNKA SELSSHQ+KIFKVD+HIGVAIAGLTADGRVLSRYMRSE IN+++TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER++E+F  SS+EDLIKDA++A RE+LQGE L+SS+CT++V+GV EPFH LDQE++Q++IDTFE V
Sbjct:    1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFEKV 238          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica OX=39947 GN=PAF1 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.867e-128
Identity = 178/240 (74.17%), Postives = 208/240 (86.67%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEKLRSSVCTIAVV-----GVGEPFHILDQETVQQLIDTF 705
            MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSA +GLRS+TH VLA  NKA SELSSHQ+K+F+V +H GVA+AGLTADGRVLSR++RSECIN+ + Y++PLPV RL ++LADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERR+E +   + E LIKDAL A +E+LQGEKL SS CT+A+V     G  EPF ++D + +Q++ID+ 
Sbjct:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSM 240          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum OX=44689 GN=psmA1 PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.945e-94
Identity = 131/238 (55.04%), Postives = 179/238 (75.21%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQG--EKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFE 708
            M+RNQYD+D+TT+SP+GR+ Q+EYAMEAVKQG AA+ L+SK   VL  + +++SEL S+QKKIF VD+H+G+AI+GLTAD R+L  YMR+EC NYNY YES + V RLV ++ADK QV TQR  +RPYGVGLLVAG D+ GAH+Y  CPSGN+++Y++ +IGSRSQ+AKTYLE+ +E+F   + E LI   L A RE++    + L S   +I +VG G+PF I+++   Q  ++  E
Sbjct:    1 MYRNQYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSELGSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLNLLE 238          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus OX=9913 GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 6.439e-93
Identity = 132/254 (51.97%), Postives = 175/254 (68.90%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VDNHIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    FM  +  +L+K  L A RE+L  E+ L +   +I +VG    F I D + V   ++  E   + +  P  TQPA E
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQP--TQPADE 252          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens OX=9606 GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.641e-93
Identity = 132/254 (51.97%), Postives = 175/254 (68.90%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VDNHIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    FM  +  +L+K  L A RE+L  E+ L +   +I +VG    F I D + V   ++  E   + +  PA  QPA E
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPA--QPADE 252          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus OX=10090 GN=Psma1 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.018e-92
Identity = 131/252 (51.98%), Postives = 174/252 (69.05%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPA 753
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VDNHIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    FM  + ++L+K  L A RE+L  E+ L +   +I +VG    F I D + V   +D       EE P  + QP+
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGL-----EERPQRKAQPS 247          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii OX=9601 GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.266e-92
Identity = 132/254 (51.97%), Postives = 175/254 (68.90%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VDNHIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    FM  +  +L+K  L A RE+L  E+ L +   +I +VG    F I D + V   ++  E   + +  PA  QPA E
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFLEGLEERPQRKAQPA--QPADE 252          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus OX=10116 GN=Psma1 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 1.541e-92
Identity = 131/252 (51.98%), Postives = 174/252 (69.05%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPA 753
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VDNHIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    FM  + ++L+K  L A RE+L  E+ L +   +I +VG    F I D + V   +D       EE P  + QP+
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGL-----EERPQRKAQPS 247          
BLAST of rna-KK1_019936 vs. DB:Swiss
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis OX=9541 GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 4.489e-92
Identity = 131/254 (51.57%), Postives = 175/254 (68.90%), Query Frame = 1
Query:    1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQGEK-LRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQPATE 759
            MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++H+KKI  VDNHIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    FM  +  +L+K  L A RE+L  E+ L +   +I +VG    F I D + V   ++  E   + +  PA  QPA E
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPA--QPADE 252          
The following BLAST results are available for this feature:
BLAST of rna-KK1_019936 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PSA1A_ARATH2.095e-15786.13Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA1B_ARATH1.534e-15685.29Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1_ORYSJ2.867e-12874.17Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA1_DICDI3.945e-9455.04Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA1_BOVIN6.439e-9351.97Proteasome subunit alpha type-1 OS=Bos taurus OX=9... [more]
PSA1_HUMAN9.641e-9351.97Proteasome subunit alpha type-1 OS=Homo sapiens OX... [more]
PSA1_MOUSE1.018e-9251.98Proteasome subunit alpha type-1 OS=Mus musculus OX... [more]
PSA1_PONAB1.266e-9251.97Proteasome subunit alpha type-1 OS=Pongo abelii OX... [more]
PSA1_RAT1.541e-9251.98Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1_MACFA4.489e-9251.57Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000426Proteasome alpha-subunit, N-terminal domainSMARTSM00948Proteasome_A_N_2coord: 6..28
e-value: 4.5E-10
score: 49.5
IPR000426Proteasome alpha-subunit, N-terminal domainPFAMPF10584Proteasome_A_Ncoord: 6..28
e-value: 3.3E-14
score: 52.2
IPR000426Proteasome alpha-subunit, N-terminal domainPROSITEPS00388PROTEASOME_ALPHA_1coord: 6..28
IPR001353Proteasome, subunit alpha/betaPFAMPF00227Proteasomecoord: 29..214
e-value: 8.5E-57
score: 191.7
IPR029055Nucleophile aminohydrolases, N-terminalGENE3D3.60.20.10coord: 1..242
e-value: 5.2E-89
score: 299.7
IPR029055Nucleophile aminohydrolases, N-terminalSUPERFAMILY56235N-terminal nucleophile aminohydrolases (Ntn hydrolases)coord: 4..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..280
IPR023332Proteasome alpha-type subunitPROSITEPS51475PROTEASOME_ALPHA_2coord: 21..232
score: 75.947
IPR035144Proteasome subunit alpha 1CDDcd03749proteasome_alpha_type_1coord: 6..215
e-value: 8.22844E-143
score: 397.817

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936; organism=Cajanus cajan; type=mRNA; length=843bp
ATGTTCCGAAACCAGTACGACACGGACGTCACCACATGGAGCCCGGCGGG
GCGGCTCTTCCAGGTGGAGTACGCCATGGAGGCGGTGAAGCAGGGCTCGG
CGGCGATAGGGCTCCGATCGAAGACTCACGTCGTTCTCGCATGCGTCAAC
AAGGCCAACTCCGAACTCTCCTCGCACCAGAAGAAGATCTTCAAGGTCGA
CAACCACATCGGCGTCGCCATCGCCGGCCTCACCGCCGACGGCCGCGTCC
TCTCCCGCTACATGCGATCCGAGTGCATTAACTACAACTACACCTACGAG
TCTCCTCTCCCCGTCGGCAGGCTCGTCGTTCAGCTCGCCGACAAGGCGCA
GGTTTGCACACAGCGATCATGGAAACGTCCTTATGGGGTTGGTCTTCTGG
TTGCTGGATTAGATGAATCTGGGGCTCACCTCTATTACAACTGTCCCAGT
GGAAACTATTTTGAATATCAGGCTTTTGCTATTGGATCTCGCTCACAAGC
TGCAAAGACATACTTGGAACGTAGGTATGAGAATTTCATGGGCTCTTCAC
GAGAAGATCTGATCAAAGATGCACTTATCGCAACTAGGGAGTCCTTGCAA
GGTGAAAAGCTCAGGAGTTCTGTATGCACTATTGCTGTGGTTGGAGTTGG
TGAGCCCTTCCACATTTTGGACCAGGAAACTGTTCAACAATTGATTGATA
CTTTTGAGATTGTGAAGGAGGAGGAAGTCCCTCCAGCTGAAACTCAACCA
GCCACCGAGCAGGATGCTGCTGCAGAACAGGGTTCTGGCGCAGATCAAGG
TGGTGCTGCTGGAGAACAAGGTGGTTCTCCTATGGAAATTTGA
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protein sequence of rna-KK1_019936_Cc_Asha_v1.0

>rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=280bp
MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVN
KANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYE
SPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPS
GNYFEYQAFAIGSRSQAAKTYLERRYENFMGSSREDLIKDALIATRESLQ
GEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVKEEEVPPAETQP
ATEQDAAAEQGSGADQGGAAGEQGGSPMEI
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mRNA from alignment at Chr_1-CM003603.1:1883840..1886666-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936; organism=Cajanus cajan; type=mRNA; length=2827bp; location=Sequence derived from: Chr_1-CM003603.1:1883840..1886666- (Cajanus cajan
ATGTTCCGAAACCAGTACGACACGGACGTCACCACATGGAGCCCGGCGGG GCGGCTCTTCCAGGTGGAGTACGCCATGGAGGCGGTGAAGCAGGGCTCGG CGGCGATAGGGCTCCGATCGAAGACTCACGTCGTTCTCGCATGCGTCAAC AAGGCCAACTCCGAACTCTCCTCGCACCAGAAGAAGATCTTCAAGGTCGA CAACCACATCGGCGTCGCCATCGCCGGCCTCACCGCCGACGGCCGCGTCC TCTCCCGCTACATGCGATCCGAGTGCATTAACTACAACTACACCTACGAG TCTCCTCTCCCCGTCGGCAGGCTCGTCGTTCAGCTCGCCGACAAGGCGCA GGTACATCACCGCACCTAGGGTTTCCGCTTTCCAATTTCTCCATGTCATC GCGTTTATAGTTATTTCAATTGAAACCGGGACTGCGCTTTTAATTTGGAT TCTAGGTTGTGCGATTGAATTGTGGCCTTGTTTTCTGTCCGTGATTTCAA TGGATGCCACGAGAGCATTTCTGCGATTTAAAACCTTGGTTGTGGTAGGG TTTTGTTGTTGTTACAGATCCTTGATATTGGGAACAATTGCGGACAAATG CAGTTGATATGGCCACAATTGCGGTTGTGGAAACCGGGAAGGCCTGATGT TGAGGCCGTGATTGTGGTTTTTGATGTGTTGCTGATCGATTTCGGTTCTT TGTAATTGGTTGAGTGTGGATTTTCGTTCTCTGATGTGGGGTGAACTTCT GTTTTATTTGAGGATGTTCTTGTATTAGGGAAGAGGTTGGGTGTGATTTA GTGAGCATTGTTGCGGGTTATAAATAGGATGCTGTGGTGGTGTTATAGCA GAGTAGCAGAGCAAAGTGGTGTTAGGCTGCTATGGATTCAGAGTTTCAAA TAGCAGTGGTTTCCAATAGCGGCCAATGCAGCCAGAATATTCTGGCTTTT CTCATGCTAGAGCAGTGCTGCCAAGATATAAGCTCCAAAACCCCATATTT TTTAGCAAGTGTCTTTAGTGTAAAATCGTGATTTCTTCCCTATTCTCGAA TGCATTTTTTGTTTCAAAAACATAATAGGATTTGAAACCCTTCTTCCTTG ACCATTCCATAAAAAAGTTATGGCTGTTTTATACCTCTGTTCCTTCATAC TTATGAGGAGTATTTTTTTCATGTTCAATTTTTTCTTCTTATTTTAGATT TCCCAATTCTCATTCTACTTAGTTGTATCCGACTTGTTGTGCTCTTTTTC TATTGATCTCACCATAGTCTCTCATTTTAGGTTCATTATTAATGTACTCC TTATTTCTCCTTGATTGATGTTGATAGTGTGCAAGTATGAATTGTTATTT ATCAGAATTTTCATTAATTTTTTTGTTGAGAATTTATATGTGTAGCATAA ATTATTTAGTTTACATTATAATATTTAACCTGCTTCCCACAATCTTGCTA TAGCATTTTAATAATTGGCTGCAAAGCCTGCAATATTGATACGTGTATAT ATAATTTTAAATAAATATGCTTCCTCTATTGTGGTTGTGTATATATAATT TTAAATAAATATGCTTCCTCTATTGTGGTTGTGTATATATAATTTTAAAT AAATATGCTTCCTCTATTATGGTTGTGTGATGAAAGGCCTTGCCATTTTG GGTCCAGTTTCTGTTTGAAATTTGAATAGCTCATGGCTTTGCCAGGTTTC TGTTTACTGTGAGGAAATCCTGAAGGATGGTAGTATTTTTGGTGACGTCT TTCCAAGTTATGTATTTGTGTCATAGTTAATACGTCATGCAAATCTATGC TGAGATGGCTGTTTCACAAAGTGAAGTGGAATGCGGATTATTGTTATGTT GAAGTTGATGTAACTTGTAAAGGTCCTAGTTGAGTTAGGTTCATGTTATC GAACAGTTTGTGTTCATTCAAGAGATAAATGTATTTTGACCTGGATTCTT CTTACTGGGGTTTACAGATATTTAAGTAGATATAGAAAGTCCGATGAACA ACATATTCTGGAGTAGTAACCATCCTTTCCCTCGTTTATTTTATTGGTTT TAGGTTCTTTCAGGTGGTTAGTAGTTACATTATTGGAAACTGATGTTTAG TTCACGATGAGGAAGATATTAGATTAGCTAATCTATATTGTTTTATGATA TACAAGTTATACTTGTGTTTTAGTTGTAGAAAATTGAATGAATAGGGTAT GGGAGGCAAAGCTTGTGCTTGTAACTGCAGAATTATGTGGCAAAAGAGGG TAGAAAGAAAAATTTATCTGCAAAATTTATTAAAACTGAAAAATGTCTTT CTCATCAGTATTTGTGATGCAATTTTGAGTTGCAGGTTTGCACACAGCGA TCATGGAAACGTCCTTATGGGGTTGGTCTTCTGGTTGCTGGATTAGATGA ATCTGGGGCTCACCTCTATTACAACTGTCCCAGTGGAAACTATTTTGAAT ATCAGGCTTTTGCTATTGGATCTCGCTCACAAGCTGCAAAGACATACTTG GAACGTAGGTATGAGAATTTCATGGGCTCTTCACGAGAAGATCTGATCAA AGATGCACTTATCGCAACTAGGGAGTCCTTGCAAGGTGAAAAGCTCAGGA GTTCTGTATGCACTATTGCTGTGGTTGGAGTTGGTGAGCCCTTCCACATT TTGGACCAGGAAACTGTTCAACAATTGATTGATACTTTTGAGATTGTGAA GGAGGAGGAAGTCCCTCCAGCTGAAACTCAACCAGCCACCGAGCAGGATG CTGCTGCAGAACAGGGTTCTGGCGCAGATCAAGGTGGTGCTGCTGGAGAA CAAGGTGGTTCTCCTATGGAAATTTGA
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Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1883840..1886666-

>rna-KK1_019936_Cc_Asha_v1.0 ID=rna-KK1_019936_Cc_Asha_v1.0; Name=rna-KK1_019936; organism=Cajanus cajan; type=CDS; length=1686bp; location=Sequence derived from: Chr_1-CM003603.1:1883840..1886666- (Cajanus cajan
ATGTTCCGAAACCAGTACGACACGGACGTCACCACATGGAGCCCGGCGGG
GCGGCTCTTCCAGGTGGAGTACGCCATGGAGGCGGTGAAGCAGGGCTCGG
CGGCGATAGGGCTCCGATCGAAGACTCACGTCGTTCTCGCATGCGTCAAC
AAGGCCAACTCCGAACTCTCCTCGCACCAGAAGAAGATCTTCAAGGTCGA
CAACCACATCGGCGTCGCCATCGCCGGCCTCACCGCCGACGGCCGCGTCC
TCTCCCGCTACATGCGATCCGAGTGCATTAACTACAACTACACCTACGAG
TCTCCTCTCCCCGTCGGCAGGCTCGTCGTTCAGCTCGCCGACAAGGCGCA
GATGTTCCGAAACCAGTACGACACGGACGTCACCACATGGAGCCCGGCGG
GGCGGCTCTTCCAGGTGGAGTACGCCATGGAGGCGGTGAAGCAGGGCTCG
GCGGCGATAGGGCTCCGATCGAAGACTCACGTCGTTCTCGCATGCGTCAA
CAAGGCCAACTCCGAACTCTCCTCGCACCAGAAGAAGATCTTCAAGGTCG
ACAACCACATCGGCGTCGCCATCGCCGGCCTCACCGCCGACGGCCGCGTC
CTCTCCCGCTACATGCGATCCGAGTGCATTAACTACAACTACACCTACGA
GTCTCCTCTCCCCGTCGGCAGGCTCGTCGTTCAGCTCGCCGACAAGGCGC
AGGTTTGCACACAGCGATCATGGAAACGTCCTTATGGGGTTGGTCTTCTG
GTTGCTGGATTAGATGAATCTGGGGCTCACCTCTATTACAACTGTCCCAG
TGGAAACTATTTTGAATATCAGGCTTTTGCTATTGGATCTCGCTCACAAG
CTGCAAAGACATACTTGGAACGTAGGTATGAGAATTTCATGGGCTCTTCA
CGAGAAGATCTGATCAAAGATGCACTTATCGCAACTAGGGAGTCCTTGCA
AGGTGAAAAGCTCAGGAGTTCTGTATGCACTATTGCTGTGGTTGGAGTTG
GTGAGCCCTTCCACATTTTGGACCAGGAAACTGTTCAACAATTGATTGAT
ACTTTTGAGATTGTGAAGGAGGAGGAAGTCCCTCCAGCTGAAACTCAACC
AGCCACCGAGCAGGATGCTGCTGCAGAACAGGGTTCTGGCGCAGATCAAG
GTGGTGCTGCTGGAGAACAAGGTGGTTCTCCTATGGAAATTTGAGTTTGC
ACACAGCGATCATGGAAACGTCCTTATGGGGTTGGTCTTCTGGTTGCTGG
ATTAGATGAATCTGGGGCTCACCTCTATTACAACTGTCCCAGTGGAAACT
ATTTTGAATATCAGGCTTTTGCTATTGGATCTCGCTCACAAGCTGCAAAG
ACATACTTGGAACGTAGGTATGAGAATTTCATGGGCTCTTCACGAGAAGA
TCTGATCAAAGATGCACTTATCGCAACTAGGGAGTCCTTGCAAGGTGAAA
AGCTCAGGAGTTCTGTATGCACTATTGCTGTGGTTGGAGTTGGTGAGCCC
TTCCACATTTTGGACCAGGAAACTGTTCAACAATTGATTGATACTTTTGA
GATTGTGAAGGAGGAGGAAGTCCCTCCAGCTGAAACTCAACCAGCCACCG
AGCAGGATGCTGCTGCAGAACAGGGTTCTGGCGCAGATCAAGGTGGTGCT
GCTGGAGAACAAGGTGGTTCTCCTATGGAAATTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000426Proteasome_asu_N
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
IPR023332Proteasome_alpha-type
IPR035144Proteasome_alpha1
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in protein catabolic process