Vigun01g182200.2
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match: WDL4_ARATH (Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.466e-25 Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1
Query: 640 NLQAKSKENQEAEIKLLRKSLTFKATPMPNFYKEPPPKVELKKIPTTRPKSPKLGRHK 813
NLQAKSKE+QE EIK LRKSLTFKA PMP+FYKEPPPKVELKKIPTTRPKSPKLGR K
Sbjct: 277 NLQAKSKESQEEEIKRLRKSLTFKAGPMPSFYKEPPPKVELKKIPTTRPKSPKLGRRK 334
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match: WDL5_ARATH (Protein WVD2-like 5 OS=Arabidopsis thaliana OX=3702 GN=WDL5 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.867e-21 Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 640 NLQAKSKENQEAEIKLLRKSLTFKATPMPNFYKEP-PPKVELKKIPTTRPKSPKLGRHK 813
++QAKSKE QEAE+++LRKSL FKATPMP+FY+EP PPK ELKKIP TRPKSPKLGR K
Sbjct: 238 SMQAKSKETQEAELRMLRKSLNFKATPMPSFYQEPQPPKTELKKIPPTRPKSPKLGRKK 296
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match: WDL6_ARATH (Protein WVD2-like 6 OS=Arabidopsis thaliana OX=3702 GN=WDL6 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.477e-19 Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 643 LQAKSKENQEAEIKLLRKSLTFKATPMPNFYKEPP-PKVELKKIPTTRPKSPKLGRHK 813
+QAKSKE QEAE+K+LRKSL FKATPMP FY+EP PK ELKKI TRPKSPKLGR K
Sbjct: 214 VQAKSKETQEAELKMLRKSLNFKATPMPTFYQEPQLPKTELKKIAITRPKSPKLGRKK 271
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match: WVD2_ARATH (Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana OX=3702 GN=WVD2 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.436e-13 Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 643 LQAKSKENQEAEIKLLRKSLTFKATPMPNF-YKEPPPKVELKKIPTTRPKSPKLG 804
L+ + KE QEA IK LRK+L FKA P+P+F Y+ PP K ELKK P TRPKSPKL
Sbjct: 119 LEQRQKEEQEAAIKQLRKNLKFKANPVPDFYYQRPPVKPELKKFPLTRPKSPKLN 173
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match: WDL3_ARATH (Protein WVD2-like 3 OS=Arabidopsis thaliana OX=3702 GN=WDL3 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 9.177e-13 Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 646 QAKSKENQEAEIKLLRKSLTFKATPMPNFYKE-PPPKVELKKIPTTRPKSPKLGRHKEPKMNNNS 837
+A++KE EA ++ LRKSL FKA PMP FY E PPPKVELKK TR KSPKLGR + PK N +
Sbjct: 227 EARNKEATEAALRQLRKSLRFKANPMPKFYHEGPPPKVELKKPLPTRAKSPKLGR-RNPKEGNRA 290
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match: WDL1_ARATH (Protein WVD2-like 1 OS=Arabidopsis thaliana OX=3702 GN=WDL1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.317e-12 Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 643 LQAKSKENQEAEIKLLRKSLTFKATPMPNFYKE-PPPKVELKKIPTTRPKSPKL 801
L+ + K+ QEA +K LRK+L FKA P+PNFY E PP K ELKK+P TRPKSPKL
Sbjct: 158 LEQRQKDEQEAALKQLRKNLKFKAKPVPNFYYEAPPAKPELKKLPLTRPKSPKL 211
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match: WDL2_ARATH (Protein WVD2-like 2 OS=Arabidopsis thaliana OX=3702 GN=WDL2 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 5.793e-11 Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 658 KENQEAEIKLLRKSLTFKATPMPNFYKE-PPPKVELKKIPTTRPKSPKLGRHK 813
KE QEA K LRK++ +KA P+P+FY+E PPPK LKK P TRPKSP L R K
Sbjct: 202 KEEQEAVTKQLRKNMAYKANPVPSFYQEGPPPKQPLKKFPLTRPKSPNLNRRK 254 The following BLAST results are available for this feature:
BLAST of Vigun01g182200.2 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 7
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2; organism=Vigna unguiculata; type=mRNA; length=1864bpback to top protein sequence of Vigun01g182200.2_Vu_IT97K-499-35_v1.1 >Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=379bpback to top mRNA from alignment at Vu01:36291503..36294385+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2; organism=Vigna unguiculata; type=mRNA; length=2883bp; location=Sequence derived from: Vu01:36291503..36294385+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:36291503..36294385+ >Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2; organism=Vigna unguiculata; type=CDS; length=1137bp; location=Sequence derived from: Vu01:36291503..36294385+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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