Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun01g182200.2 Vigun01g182200.2_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun01g182200.2_Vu_IT97K-499-35_v1.1 Vigun01g182200.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun01g182200.2.v1.1.five_prime_UTR.1 Vigun01g182200.2.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun01g182200.2.v1.1.CDS.1 Vigun01g182200.2.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun01g182200.2.v1.1.CDS.2 Vigun01g182200.2.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun01g182200.2.v1.1.CDS.3 Vigun01g182200.2.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun01g182200.2.v1.1.CDS.4 Vigun01g182200.2.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun01g182200.2.v1.1.CDS.5 Vigun01g182200.2.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun01g182200.2.v1.1.CDS.6 Vigun01g182200.2.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun01g182200.2.v1.1.CDS.7 Vigun01g182200.2.v1.1.CDS.7_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun01g182200.2.v1.1.three_prime_UTR.1 Vigun01g182200.2.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match:
WDL4_ARATH (Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2)
HSP 1 Score: 109.768 bits (273), Expect = 2.466e-25
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1
Query: 640 NLQAKSKENQEAEIKLLRKSLTFKATPMPNFYKEPPPKVELKKIPTTRPKSPKLGRHK 813
NLQAKSKE+QE EIK LRKSLTFKA PMP+FYKEPPPKVELKKIPTTRPKSPKLGR K
Sbjct: 277 NLQAKSKESQEEEIKRLRKSLTFKAGPMPSFYKEPPPKVELKKIPTTRPKSPKLGRRK 334
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match:
WDL5_ARATH (Protein WVD2-like 5 OS=Arabidopsis thaliana OX=3702 GN=WDL5 PE=1 SV=1)
HSP 1 Score: 98.2117 bits (243), Expect = 2.867e-21
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 640 NLQAKSKENQEAEIKLLRKSLTFKATPMPNFYKEP-PPKVELKKIPTTRPKSPKLGRHK 813
++QAKSKE QEAE+++LRKSL FKATPMP+FY+EP PPK ELKKIP TRPKSPKLGR K
Sbjct: 238 SMQAKSKETQEAELRMLRKSLNFKATPMPSFYQEPQPPKTELKKIPPTRPKSPKLGRKK 296
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match:
WDL6_ARATH (Protein WVD2-like 6 OS=Arabidopsis thaliana OX=3702 GN=WDL6 PE=1 SV=1)
HSP 1 Score: 90.5077 bits (223), Expect = 9.477e-19
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 643 LQAKSKENQEAEIKLLRKSLTFKATPMPNFYKEPP-PKVELKKIPTTRPKSPKLGRHK 813
+QAKSKE QEAE+K+LRKSL FKATPMP FY+EP PK ELKKI TRPKSPKLGR K
Sbjct: 214 VQAKSKETQEAELKMLRKSLNFKATPMPTFYQEPQLPKTELKKIAITRPKSPKLGRKK 271
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match:
WVD2_ARATH (Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana OX=3702 GN=WVD2 PE=2 SV=1)
HSP 1 Score: 70.4774 bits (171), Expect = 6.436e-13
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 643 LQAKSKENQEAEIKLLRKSLTFKATPMPNF-YKEPPPKVELKKIPTTRPKSPKLG 804
L+ + KE QEA IK LRK+L FKA P+P+F Y+ PP K ELKK P TRPKSPKL
Sbjct: 119 LEQRQKEEQEAAIKQLRKNLKFKANPVPDFYYQRPPVKPELKKFPLTRPKSPKLN 173
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match:
WDL3_ARATH (Protein WVD2-like 3 OS=Arabidopsis thaliana OX=3702 GN=WDL3 PE=1 SV=1)
HSP 1 Score: 72.4034 bits (176), Expect = 9.177e-13
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 646 QAKSKENQEAEIKLLRKSLTFKATPMPNFYKE-PPPKVELKKIPTTRPKSPKLGRHKEPKMNNNS 837
+A++KE EA ++ LRKSL FKA PMP FY E PPPKVELKK TR KSPKLGR + PK N +
Sbjct: 227 EARNKEATEAALRQLRKSLRFKANPMPKFYHEGPPPKVELKKPLPTRAKSPKLGR-RNPKEGNRA 290
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match:
WDL1_ARATH (Protein WVD2-like 1 OS=Arabidopsis thaliana OX=3702 GN=WDL1 PE=1 SV=1)
HSP 1 Score: 71.2478 bits (173), Expect = 1.317e-12
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 643 LQAKSKENQEAEIKLLRKSLTFKATPMPNFYKE-PPPKVELKKIPTTRPKSPKL 801
L+ + K+ QEA +K LRK+L FKA P+PNFY E PP K ELKK+P TRPKSPKL
Sbjct: 158 LEQRQKDEQEAALKQLRKNLKFKAKPVPNFYYEAPPAKPELKKLPLTRPKSPKL 211
BLAST of Vigun01g182200.2 vs. DB:Swiss
Match:
WDL2_ARATH (Protein WVD2-like 2 OS=Arabidopsis thaliana OX=3702 GN=WDL2 PE=2 SV=1)
HSP 1 Score: 66.6254 bits (161), Expect = 5.793e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 658 KENQEAEIKLLRKSLTFKATPMPNFYKE-PPPKVELKKIPTTRPKSPKLGRHK 813
KE QEA K LRK++ +KA P+P+FY+E PPPK LKK P TRPKSP L R K
Sbjct: 202 KEEQEAVTKQLRKNMAYKANPVPSFYQEGPPPKQPLKKFPLTRPKSPNLNRRK 254
The following BLAST results are available for this feature:
BLAST of Vigun01g182200.2 vs. DB:Swiss
Analysis Date: 2019-10-17 (
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot )
Total hits: 7
200 400 600 800 1000 1200 1400 1600 1800 Expect = 2.47e-25 / Id = 89.66 Expect = 2.87e-21 / Id = 77.97 Expect = 9.48e-19 / Id = 77.59 Expect = 6.44e-13 / Id = 63.64 Expect = 9.18e-13 / Id = 61.54 Expect = 1.32e-12 / Id = 64.81 Expect = 5.79e-11 / Id = 62.26 Sequence WDL4_ARATH WDL5_ARATH WDL6_ARATH WVD2_ARATH WDL3_ARATH WDL1_ARATH WDL2_ARATH
Match Name E-value Identity Description
WDL4_ARATH 2.466e-25 89.66 Protein WVD2-like 4 OS=Arabidopsis thaliana OX=370... [more] WDL5_ARATH 2.867e-21 77.97 Protein WVD2-like 5 OS=Arabidopsis thaliana OX=370... [more] WDL6_ARATH 9.477e-19 77.59 Protein WVD2-like 6 OS=Arabidopsis thaliana OX=370... [more] WVD2_ARATH 6.436e-13 63.64 Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana OX... [more] WDL3_ARATH 9.177e-13 61.54 Protein WVD2-like 3 OS=Arabidopsis thaliana OX=370... [more] WDL1_ARATH 1.317e-12 64.81 Protein WVD2-like 1 OS=Arabidopsis thaliana OX=370... [more] WDL2_ARATH 5.793e-11 62.26 Protein WVD2-like 2 OS=Arabidopsis thaliana OX=370... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2; organism=Vigna unguiculata; type=mRNA; length=1864bp back to top protein sequence of Vigun01g182200.2_Vu_IT97K-499-35_v1.1
>Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=379bp back to top mRNA from alignment at Vu01:36291503..36294385+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2; organism=Vigna unguiculata; type=mRNA; length=2883bp; location=Sequence derived from: Vu01:36291503..36294385+ (Vigna unguiculataTTCACTAATCTTTGTAATCACATGAACCAACCCAAATTTAATGTGTTTAA
ACTAAAATATTCAGAAGAAACAAGCATCATCGTATTGATTGCAAATCGGT
TGAACCATGGTCAGCATTTTGGGGACAGACAGCCACGTACATTTGTCTCT
GCCACAACAGAACCTCCAAACCATAAACATTATAAAGAAAGGTTCCTTGG
GGAAAGATAATAACTATGGAAGAAGTGATGTGAGGGAAATGATGGATTAT
TAGAATTGAGGTGATTAAGAAAGAAGAAAAGAGGAGTGACAGTTAAACGA
GAGAAGAAAAAGAAGTTTGCTTGCAGTGACAGTTACTGAGTTAGGGAGTG
GTACAAAAGTCATTGTGTTGTGGCAGTTCCTGTTAATCTGTCTATCCCCT
TCCTGAAAGCTCTTCCCACAAATTTATCAAACACTTTAAAACCACCATTC
TCCTGTCTTCTCTTTTCTGCACTACCAATCAACTCTTCTGTTTTCTCCTC
ACTTCGTTTTCGTAATTGTTAACACCACA ATGGAATCTGAAAACGGGCTT
GCTGTGGAGGAAGAGAAGCGTGTTATCGGGATAACAACCAAGGTGGAGAG
TATCAAGAAAGAAGATGAAAAGGACTGTAATGGTGCAGAAATTCAGACCA
TGAATGAAGAGGCTAAAGACCCCATTTCTGCTGCAGTTGAAGCCTCCAAA
ACTTCAAAAGGTGCCACTAAG GTATCATACAGAACGTATCTGAATTATTA
TTTGTTTGAACTAAACTACCAGTGGTGTTTTTAGTTAGAACTCGTAATGC
ACGCTTACTAATTAAGTTAACGTGATTAGGAAAATGGTGGCAGAGCAAGT
GTTGGTTCCAAGAGCAACAAATATGGCAGAGATAATTTGAAGGGTCTAAG
TTCAATGGCTCAGAAACAAAGGCCATCCCTTTCCCAAAGCGTTTCTTTCC
CACCCAGATCATCTGGGGAAGATGCTATGCAGAAAAGCATTGATGGGTAT
ATTGTGAAGACAAAAGTTAAAGACGTTCAAGGTTATGCCCCCATTCGTCA
TTTAAACAAGTCCACAAACTCTGGAGTGAAACACTCTGCG GTAGAGATTT
TCAATTCCTCATTCAATTTCTTTGCACAACTTCATTGCCTCTCATCATTG
GTTTCCATGTTCATGACTTTAGTTATGTCTAACAGTTTGGAAGGACTACT
ATAGTTACTCTAGCCACCAAGAGCCAAATTTCTGAGGCATCGTT GTAAGT
AGCCACCAACCTCACAAGATTTACTAAATCCTTCTATACATTTTTGTTTC
AGTCTTCTATAGTGTTGCTATCAATAATTTTCAGTTTGAGATAACTCAAT
CCTTGTGCATGTATTGGAAAATTTATGTTCAGAAGATTGCTGAATGGAAT
CATGAAACTGTCACGTTATGGTTTTTACATTATTGCAGACTTGTTGATCA
TGTGTTAAACACAGCAAAATCTGCAAAACCAAATAAAGATGATGATTGCC
ATTCCGCAACTTCGTATGATTTATAGCCTTTAACTCTGAGGACATTTTCA
TCCTTTCTCTTCTATTTCTTATAGGATTTGAGATCTTTCAATTCTAAACC
GGCTTCCTTTTCTCTTCTACTTTAACTAAAATGTTGTGAAAACTTTTTAT
TCATGTGTTGTCAGAAGTGCTACTCCTCGTCTGAGAAGCAGTGGAATTGG
ATTTTCCTTGCGATTGGAAGAAAGAGCTGAAAAACGAAAGGAG GTAGTTT
TGCTTAAACCTTGGACCCTGTCGATGTTATATTACCAATGCCGGAAACAG
ATGTTAATCCTAAGTTATGCCTTTTTACTCAGTTTTTCTCAAAGTTGGAG
GAAAAAACTCTAGCCAAGGAAGCAGAGAAAACTAACCTACAAGCAAAATC
AAAG GTATATCTCACAACAATAACTTAACATGCACATTGTGGTTTAGATT
TTCACTAAAAGCTTATCTGCTGCTTTAAGCTTATTGTCTCCTCTGCATGT
TTTGCTCTGAATTTTCCCCAGGAAAACCAGGAGGCAGAGATCAAGCTATT
GAGGAAGAGCCTGACATTCAAAGCCACTCCAATGCCAAATTTCTACAAGG
AACCACCTCCTAAAGTTGAGCTTAAGAAG GTAACTAGTCTAAAACTTGAC
TTCCAATTGGGATTATGAACAATGTTTGCCTACATTCATAATCAATGATC
TATCTTTAATCCTTAATCTTTCTTCGGTAATAGATTCTTTAAAGGGGCTT
CATCTTTTGGCATTCTTTGTTTGTTTCTTTACGCATATATTCTGATGTAT
TTGATGAACCAATTAGATACCAACAACACGCCCAAAATCCCCAAAGCTTG
GAAGGCACAAAGAACCTAAAATGAACAACAATTCAGGAGAAGATAAGTGT
TGCTCAAGCCCGCGTGGGAAACAACAGCAGAATGATTCAAACAAGGGTAA
GGGTCAAAAGGATGTGATTTCAAAGAAACAAGTCAGAAAAACCTACTCCA
AGGTGAAGTCTGAGGAAAATGTAAGCGCAGAAAACAAAGAATTCCAAGTT
CCAAATGACAACAATTCTGAATGCAAAAATGACATGGCGTTACAATCTGA
ACCAGGTCATGCATCAAATACTGCACTGCTTCTGAATTCTACTACGACAG
AGCTTGTGTCGTATGAGGTTATTGTTGGAGTGTAG ATTTATGTAAGATTA
TGTAAGATTAGAGTTGTATGTTGTTAATTATTTCCTTATCATTGTGAATA
CAGAGGTTGGTTCATGTTCATCATAAGCCGAGTATTATTCGAAATAAGAG
TTGATCTTTTTTATGTTCAGCAAGTCATTATTGTATTTAACAGATCAAAT
TGTCTCTTATTCTTCAATTCTTCAGTTAAAATT back to top Coding sequence (CDS) from alignment at Vu01:36291503..36294385+
>Vigun01g182200.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g182200.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g182200.2; organism=Vigna unguiculata; type=CDS; length=1137bp; location=Sequence derived from: Vu01:36291503..36294385+ (Vigna unguiculata back to top
