Vigun08g014400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.555e-69 Identity = 112/260 (43.08%), Postives = 155/260 (59.62%), Query Frame = 1 Query: 7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNA-SGFHYHPTVISVGVCGGSSNSKYVCLDLNLKENRLRELACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777 F+ E CI+ I+S T+P DAC + VS+TF S +SD +W FL SSKK LYF+LCN P + D KKSV L+K +GK C M SA NL I WGD+ +W+W +PESRFE VA LR VCWF+I G+ +T LS T Y+ ++VFK ++ GF +VGV G + + +C ++ R R + PK R DGW+EIE+GEFFN G + +++ + +ET KCG +++GIEIRP + Sbjct: 14 FDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPA-DYESLIPPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEAIRRGR-RNVVKPKQREDGWMEIELGEFFNDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRPAKI 271
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 8.705e-61 Identity = 107/262 (40.84%), Postives = 151/262 (57.63%), Query Frame = 1 Query: 1 MEFEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNASGFHYHPTVISVGVCGGSS---NSKYVCLDLNLKENRLRELACPKVRSDGWLEIEMGEFFNSGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777 M F DL E CIA ++S TSP DAC++S VS+ SAA+S+ W FL + + + S S K L+ C P +I+ G+ S ++KR+GK C+M SAR LDI W D W W S+P+SRFE VA L VCWF+I GKIST LS T+Y+ +LVFK F + + V + N++ V L +E+ R DGWLEIE+GE++ G +E++ + ++ET WK G +++GIEIRPK + Sbjct: 1 MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPS-DYRMYIDNSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFRSTRTEVYNNRRVFLKSGTQES----------REDGWLEIELGEYY-VGFDDEEIEMSVLETREGGWKGGIIVQGIEIRPKEL 250
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana OX=3702 GN=PP2B8 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 8.504e-60 Identity = 112/270 (41.48%), Postives = 161/270 (59.63%), Query Frame = 1 Query: 4 EFEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLL-NFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMN-ASGFHYHPTVISVGVCGGS---SNSKYVCLDLNLKE-----NRLRELACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777 E +DL E C++ I+S TSP DAC L+ VS+TF SA +SD VW F+ + SLI S SKK LYF LC+ +ID GKKS+ ++K K C M SA NL I WG+ W W P++RFE VA L VC F+I G+I++ +S +T Y+ ++V+K +N GF + VGV G S +Y+C D + E +R + L P+ R DGW+EI++GEFFN G L ++++ + +E WK G +++GIEIRP ++ Sbjct: 35 ELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPTNI 304
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.851e-57 Identity = 104/258 (40.31%), Postives = 148/258 (57.36%), Query Frame = 1 Query: 7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNA-SGFHYHPTVISVGVCGGSSNSKYVCL---DLNLKENRLRELACPKVRSDGWLEIEMGEFFNSGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768 F+ L E CI+ I+S TSP DAC + VS+TF SA SD VW FL S +SKK LYF LC++P +I+ GKKS L+K +GK C M S++ L I WG +W+W S+PESRF +A L VCWF+I GK S LS T Y+ ++VFK + G + P + +G+ G S+ +++ R++ P R DGW+E E+GEFFN + +++ ++E S WK G +++GIE RP Sbjct: 61 FDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPP-EYESLVSRSRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEE-RCDEIEFSVIEIKSPSWKSGLIIQGIEFRP 316
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 6.829e-57 Identity = 109/304 (35.86%), Postives = 161/304 (52.96%), Query Frame = 1 Query: 7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNAS--GFHYHPTVISVGVCGGSSNSKYVCLDLNLKEN-------------------RLRE----------------------LACPKVRSDGWLEIEMGEFF--NSGLKE---EQVNVKIMETTSHIWKCGFVLEGIEIRPKH 774 F+ L E CI+K++S TSP DAC ++ VS++ SAA+SD VW FL + + SKK ++ +L ++ +++ GKKS ++K +GK CYM SA L I WGD +W+W ++PES+FE VA LR VCWF++ GKIS LS THY+V++VFK N GF P VG G + K V + ++ R+R + PK R DGW E+E+G+F+ N G + +++ + IMET + WK G +++GIEIRP+ Sbjct: 32 FDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPS-EYSSLVLQSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEGERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQGIEIRPER 334
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 1.051e-54 Identity = 101/260 (38.85%), Postives = 148/260 (56.92%), Query Frame = 1 Query: 7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSAR-NLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNA-SGFHYHPTVISVGVCGGSSNSK---YVCLDLNLKENRLRELACPKVRSDGWLEIEMGEFFN-SGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768 F++L E CI+ I+S TSP DAC + VS+TF SA SD VW FL + SSKK LYF +C++P +++ G KS L+K GK C+M S + ++ I W +W W S+PE+RFE V L VCWF++ G ++T LS T Y+ ++VFK N P +VG+ G S+ + +V ++ R++ P R DGW+E E+G+FFN SG + V+ I+E + WK G +++GIE RP Sbjct: 47 FDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPS-DYSSLVPPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGC--DVVDTSILEIKTPYWKRGLIIQGIEFRP 303
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana OX=3702 GN=SKIP3 PE=1 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 6.000e-52 Identity = 105/263 (39.92%), Postives = 149/263 (56.65%), Query Frame = 1 Query: 7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDI-EWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMM-NASGFHYHPTVISVGVCGGSSNSKYVCLDLNLK-ENRLRE-LACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777 + L EGCI+ I+S TSP DAC + VS+ F SA +SD VW FL + SSKK LYF+LCN P +I+ GK S+ L+K +GK C M SA +++ D + W PESRFE VA LR F+ + +++T LS T Y+V++VFK N GF VG+ G S ++C D + K + R R+ +A P++R DGW+E E+GEF+N G + ++V + +E K G V+ GIEIRP + Sbjct: 24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPT-DYESLITPSRVFSSKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGIVGEESFRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGEFYNEGGLMSSDEVEISTVEGKYAQQKRGLVILGIEIRPAKI 285
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 6.409e-50 Identity = 94/254 (37.01%), Postives = 142/254 (55.91%), Query Frame = 1 Query: 13 DLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNASGFHYHPTVISVGVCGGSSNSKYVCLDLN--LKENRLRELACPKVRSDGWLEIEMGEFFNSGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768 +L E CIAKILS T+P+D C+LS VS F SAA SD VW+ FL ++ ++K L+F+L ++P +I+ S L++++G CYM +AR L+I WG + +W W SLP +RF VA L V W +I+GKI+ LS +T YA + VFK ++ P S+ + S V + ++++ E P +R DGW E+E+G+FF ++ + + ET K G ++ GIEIRP Sbjct: 3 NLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFL-PADFPAGFAAPAGLPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSLVLADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKETKGPYEKKGLIVYGIEIRP 255
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana OX=3702 GN=PP2B6 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 9.690e-49 Identity = 101/261 (38.70%), Postives = 147/261 (56.32%), Query Frame = 1 Query: 7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNAS-GFHYHPTVISVGVCGGSSNSKYVCLDLN---LKENRLRELACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPK 771 F+DL E CI+ I+S TSP D C + VS++F A + D +W FL + SSKK LYF LC P +++ GKKS L+ +GK C + +A+ L I G++ +W+W L ES FE V L F + G +ST LS THY+V++V+K+ + G P + VG G +++C D + KE ++L K R DGW+E E+G+FFN G + ++V V I++ TS KCG ++EGIE RPK Sbjct: 45 FDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPS-EYESLIPPWRVFSSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGFKGQEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEVSIVDVTSPNLKCGVMIEGIEFRPK 304
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana OX=3702 GN=PP2B7 PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 1.337e-44 Identity = 103/261 (39.46%), Postives = 141/261 (54.02%), Query Frame = 1 Query: 13 DLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESR-FEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVF-KMMNASGFHY---HPTVISVGVCGGSSNSKYVCLDLNLKENRL--RELACPKVRSDGWLEIEMGEFFNSGL--KEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768 DL E CI+ I+S TSP DAC +LVS+TF SA +SD VW F+ S SSKK L+F LC+ +I+ KK + ++K TGK C M SA L++ H W+W + P S E V L WF+I + +T LS T Y+V++VF K GF Y V VG S +YVC ++ L + L P+ R DGW+EIE+GEFFN G +++ + + ETT K G +++GIEIRP Sbjct: 42 DLPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPP-EYESLLSRSQHFSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITNPVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVRMVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPERREDGWMEIEIGEFFNEGAFRNNDEIEMSVSETTQRNTKRGLIIQGIEIRP 298 The following BLAST results are available for this feature:
BLAST of Vigun08g014400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1; organism=Vigna unguiculata; type=mRNA; length=1533bpback to top protein sequence of Vigun08g014400.1_Vu_IT97K-499-35_v1.1 >Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=260bpback to top mRNA from alignment at Vu08:1236333..1238222+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1; organism=Vigna unguiculata; type=mRNA; length=1890bp; location=Sequence derived from: Vu08:1236333..1238222+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:1236333..1238222+ >Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1; organism=Vigna unguiculata; type=CDS; length=780bp; location=Sequence derived from: Vu08:1236333..1238222+ (Vigna unguiculataback to top |