Vigun08g014400.1

Transcript Overview
NameVigun08g014400.1
Unique NameVigun08g014400.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1533
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:1236333..1238222 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL109Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL153Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL266Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR376Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR378Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL470Pisum sativum Cameor genome v1aPisum sativum
psvuL631Pisum sativum Cameor genome v1aPisum sativum
pvvuL057Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL437Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL547Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL380Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL925Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL783Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL337Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0478Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL407Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0588Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL643Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL691Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0835Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1302Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0115Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0318Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0364Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0484Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0743Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0919Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL070Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL129Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL198Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL690Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR581Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR594Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR608Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR625Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL299Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL278Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL450Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL421Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL563Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL521Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL121Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL155Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL390Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL448Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL554Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL393Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL560Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL727Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR384Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR397Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR399Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL306Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL376Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL598Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL246Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL473Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL565Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL599Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL324Cicer arietinum
carvuL397Cicer arietinum
carvuL607Cicer arietinum
carvuL659Cicer arietinum
ccavuL160Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL432Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL549Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR642Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR654Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR657Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR662Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR677Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR698Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR664Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR692Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR703Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR715Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL073Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL134Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL227Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL080Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL145Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL242Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL056Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL339Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL689Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR443Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR466Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR470Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.03G282600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va07G070080.3Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014649529.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr01.100Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.001G013300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.03G181000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_03G01994.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr08.584Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan07g285900Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g014400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g014400Vigun08g014400_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g014400.1_Vu_IT97K-499-35_v1.1Vigun08g014400.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide
Vigun08g014400.1Vigun08g014400.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g014400.1.v1.1.five_prime_UTR.1Vigun08g014400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g014400.1.v1.1.CDS.1Vigun08g014400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g014400.1.v1.1.CDS.2Vigun08g014400.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g014400.1.v1.1.CDS.3Vigun08g014400.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g014400.1.v1.1.three_prime_UTR.1Vigun08g014400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.555e-69
Identity = 112/260 (43.08%), Postives = 155/260 (59.62%), Query Frame = 1
Query:    7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNA-SGFHYHPTVISVGVCGGSSNSKYVCLDLNLKENRLRELACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777
            F+   E CI+ I+S T+P DAC  + VS+TF S  +SD +W  FL               SSKK LYF+LCN P + D  KKSV L+K +GK C M SA NL I WGD+  +W+W  +PESRFE VA LR VCWF+I G+ +T  LS  T Y+ ++VFK ++   GF       +VGV G   + + +C    ++  R R +  PK R DGW+EIE+GEFFN G  +  +++ +  +ET     KCG +++GIEIRP  +
Sbjct:   14 FDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPA-DYESLIPPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEAIRRGR-RNVVKPKQREDGWMEIELGEFFNDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRPAKI 271          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.705e-61
Identity = 107/262 (40.84%), Postives = 151/262 (57.63%), Query Frame = 1
Query:    1 MEFEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNASGFHYHPTVISVGVCGGSS---NSKYVCLDLNLKENRLRELACPKVRSDGWLEIEMGEFFNSGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777
            M F DL E CIA ++S TSP DAC++S VS+   SAA+S+  W  FL +    +   +  S  S K L+   C  P +I+ G+ S  ++KR+GK C+M SAR LDI W D    W W S+P+SRFE VA L  VCWF+I GKIST  LS  T+Y+ +LVFK      F +    + V      +   N++ V L    +E+          R DGWLEIE+GE++  G  +E++ + ++ET    WK G +++GIEIRPK +
Sbjct:    1 MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPS-DYRMYIDNSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFRSTRTEVYNNRRVFLKSGTQES----------REDGWLEIELGEYY-VGFDDEEIEMSVLETREGGWKGGIIVQGIEIRPKEL 250          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana OX=3702 GN=PP2B8 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.504e-60
Identity = 112/270 (41.48%), Postives = 161/270 (59.63%), Query Frame = 1
Query:    4 EFEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLL-NFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMN-ASGFHYHPTVISVGVCGGS---SNSKYVCLDLNLKE-----NRLRELACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777
            E +DL E C++ I+S TSP DAC L+ VS+TF SA +SD VW  F+   + SLI  S      SKK LYF LC+   +ID GKKS+ ++K   K C M SA NL I WG+    W W   P++RFE VA L  VC F+I G+I++  +S +T Y+ ++V+K +N   GF      + VGV G     S  +Y+C D  + E     +R + L  P+ R DGW+EI++GEFFN G  L ++++ +  +E     WK G +++GIEIRP ++
Sbjct:   35 ELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPTNI 304          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.851e-57
Identity = 104/258 (40.31%), Postives = 148/258 (57.36%), Query Frame = 1
Query:    7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNA-SGFHYHPTVISVGVCGGSSNSKYVCL---DLNLKENRLRELACPKVRSDGWLEIEMGEFFNSGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768
            F+ L E CI+ I+S TSP DAC  + VS+TF SA  SD VW  FL         S     +SKK LYF LC++P +I+ GKKS  L+K +GK C M S++ L I WG    +W+W S+PESRF  +A L  VCWF+I GK S   LS  T Y+ ++VFK  +   G  + P  + +G+ G  S+ +++              R++  P  R DGW+E E+GEFFN   + +++   ++E  S  WK G +++GIE RP
Sbjct:   61 FDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPP-EYESLVSRSRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEE-RCDEIEFSVIEIKSPSWKSGLIIQGIEFRP 316          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.829e-57
Identity = 109/304 (35.86%), Postives = 161/304 (52.96%), Query Frame = 1
Query:    7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNAS--GFHYHPTVISVGVCGGSSNSKYVCLDLNLKEN-------------------RLRE----------------------LACPKVRSDGWLEIEMGEFF--NSGLKE---EQVNVKIMETTSHIWKCGFVLEGIEIRPKH 774
            F+ L E CI+K++S TSP DAC ++ VS++  SAA+SD VW  FL +           +  SKK ++ +L ++  +++ GKKS  ++K +GK CYM SA  L I WGD   +W+W ++PES+FE VA LR VCWF++ GKIS   LS  THY+V++VFK  N    GF   P    VG  G  +  K V  +    ++                   R+R                       +  PK R DGW E+E+G+F+  N G  +   +++ + IMET +  WK G +++GIEIRP+ 
Sbjct:   32 FDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPS-EYSSLVLQSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEGERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQGIEIRPER 334          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.051e-54
Identity = 101/260 (38.85%), Postives = 148/260 (56.92%), Query Frame = 1
Query:    7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSAR-NLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNA-SGFHYHPTVISVGVCGGSSNSK---YVCLDLNLKENRLRELACPKVRSDGWLEIEMGEFFN-SGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768
            F++L E CI+ I+S TSP DAC  + VS+TF SA  SD VW  FL +             SSKK LYF +C++P +++ G KS  L+K  GK C+M S + ++ I W     +W W S+PE+RFE V  L  VCWF++ G ++T  LS  T Y+ ++VFK  N        P   +VG+ G  S+ +   +V      ++   R++  P  R DGW+E E+G+FFN SG   + V+  I+E  +  WK G +++GIE RP
Sbjct:   47 FDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPS-DYSSLVPPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGC--DVVDTSILEIKTPYWKRGLIIQGIEFRP 303          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana OX=3702 GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.000e-52
Identity = 105/263 (39.92%), Postives = 149/263 (56.65%), Query Frame = 1
Query:    7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDI-EWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMM-NASGFHYHPTVISVGVCGGSSNSKYVCLDLNLK-ENRLRE-LACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPKHV 777
             + L EGCI+ I+S TSP DAC  + VS+ F SA +SD VW  FL         +     SSKK LYF+LCN P +I+ GK S+ L+K +GK C M SA  +++    D    + W   PESRFE VA LR    F+ + +++T  LS  T Y+V++VFK   N  GF        VG+ G  S   ++C D + K + R R+ +A P++R DGW+E E+GEF+N G  +  ++V +  +E      K G V+ GIEIRP  +
Sbjct:   24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPT-DYESLITPSRVFSSKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGIVGEESFRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGEFYNEGGLMSSDEVEISTVEGKYAQQKRGLVILGIEIRPAKI 285          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.409e-50
Identity = 94/254 (37.01%), Postives = 142/254 (55.91%), Query Frame = 1
Query:   13 DLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNASGFHYHPTVISVGVCGGSSNSKYVCLDLN--LKENRLRELACPKVRSDGWLEIEMGEFFNSGLKEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768
            +L E CIAKILS T+P+D C+LS VS  F SAA SD VW+ FL         ++     ++K L+F+L ++P +I+    S  L++++G  CYM +AR L+I WG +  +W W SLP +RF  VA L  V W +I+GKI+   LS +T YA + VFK  ++      P   S+ +    S    V   +   ++++   E   P +R DGW E+E+G+FF       ++ + + ET     K G ++ GIEIRP
Sbjct:    3 NLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFL-PADFPAGFAAPAGLPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSLVLADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKETKGPYEKKGLIVYGIEIRP 255          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana OX=3702 GN=PP2B6 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.690e-49
Identity = 101/261 (38.70%), Postives = 147/261 (56.32%), Query Frame = 1
Query:    7 FEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVFKMMNAS-GFHYHPTVISVGVCGGSSNSKYVCLDLN---LKENRLRELACPKVRSDGWLEIEMGEFFNSG--LKEEQVNVKIMETTSHIWKCGFVLEGIEIRPK 771
            F+DL E CI+ I+S TSP D C  + VS++F  A + D +W  FL +             SSKK LYF LC  P +++ GKKS  L+  +GK C + +A+ L I  G++  +W+W  L ES FE V  L     F + G +ST  LS  THY+V++V+K+ +   G    P  + VG  G     +++C D +    KE   ++L   K R DGW+E E+G+FFN G  +  ++V V I++ TS   KCG ++EGIE RPK
Sbjct:   45 FDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPS-EYESLIPPWRVFSSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGFKGQEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEVSIVDVTSPNLKCGVMIEGIEFRPK 304          
BLAST of Vigun08g014400.1 vs. DB:Swiss
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana OX=3702 GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.337e-44
Identity = 103/261 (39.46%), Postives = 141/261 (54.02%), Query Frame = 1
Query:   13 DLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNFTXXXXXXXXXXXXXKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFSARNLDIEWGDDGHHWEWTSLPESR-FEVVAVLRAVCWFDISGKISTVSLSSETHYAVFLVF-KMMNASGFHY---HPTVISVGVCGGSSNSKYVCLDLNLKENRL--RELACPKVRSDGWLEIEMGEFFNSGL--KEEQVNVKIMETTSHIWKCGFVLEGIEIRP 768
            DL E CI+ I+S TSP DAC  +LVS+TF SA +SD VW  F+         S     SSKK L+F LC+   +I+  KK + ++K TGK C M SA  L++      H W+W + P S   E V  L    WF+I  + +T  LS  T Y+V++VF K     GF Y      V  VG     S  +YVC    ++   L  + L  P+ R DGW+EIE+GEFFN G     +++ + + ETT    K G +++GIEIRP
Sbjct:   42 DLPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPP-EYESLLSRSQHFSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITNPVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVRMVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPERREDGWMEIEIGEFFNEGAFRNNDEIEMSVSETTQRNTKRGLIIQGIEIRP 298          
The following BLAST results are available for this feature:
BLAST of Vigun08g014400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
P2B10_ARATH1.555e-6943.08F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3... [more]
P2B12_ARATH8.705e-6140.84Putative F-box protein PP2-B12 OS=Arabidopsis thal... [more]
PP2B8_ARATH8.504e-6041.48Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
FB95_ARATH1.851e-5740.31F-box protein At2g02240 OS=Arabidopsis thaliana OX... [more]
PP2B1_ARATH6.829e-5735.86F-box protein PP2-B1 OS=Arabidopsis thaliana OX=37... [more]
PP2B2_ARATH1.051e-5438.85Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
SKIP3_ARATH6.000e-5239.92F-box protein SKIP3 OS=Arabidopsis thaliana OX=370... [more]
P2B11_ARATH6.409e-5037.01F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3... [more]
PP2B6_ARATH9.690e-4938.70Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]
PP2B7_ARATH1.337e-4439.46F-box protein PP2-B7 OS=Arabidopsis thaliana OX=37... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025886Phloem protein 2-likePFAMPF14299PP2coord: 94..256
e-value: 1.5E-49
score: 167.8
IPR001810F-box domainPFAMPF00646F-boxcoord: 8..46
e-value: 2.3E-4
score: 21.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..138
e-value: 7.2E-6
score: 27.1
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 5..103

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1; organism=Vigna unguiculata; type=mRNA; length=1533bp
ATTTATCTATAAATTCAACTAAATAAATACTCAACAACTTCATTAACATA
ATTGTCTAAGCTGTACAACATCCAATTTGTGCAAGCAATTGAATAGTTGA
CCAAGTTAACTACACGATCAAAGAAGCAAAAGGCAACTTATATAAGCAAC
AAAGCTTCATCTTCATCGTCATCATTCTTATACTGGAAGGAAAAAGAAGA
AGCTTTATGAATGGAGTTTGAAGATTTGGCAGAAGGATGCATTGCAAAGA
TACTGTCACAAACATCTCCTGTGGATGCATGCAAGCTCTCTTTAGTTTCC
AGAACCTTCTGTTCTGCAGCTGAATCTGATTTTGTGTGGTCTTCTTTTCt
cctcaatttcacctctctcattcctccttcttcccttccatcctCTAGTT
CTAAAAAGGCTCTCTATTTCAATCTCTGCAACCACCCCACCATCATTGAT
CAGGGCAAAAAGAGTGTTCAGTTGGACAAAAGGACAGGGAAGAACTGTTA
CATGTTTTCTGCTAGAAATCTGGACATTGAATGGGGTGATGATGGTCACC
ATTGGGAGTGGACAAGCCTGCCAGAGTCCAGGTTCGAAGTGGTTGCTGTG
CTTCGTGCTGTGTGCTGGTTTGACATCAGTGGGAAGATAAGCACAGTTTC
TCTGTCATCAGAGACTCATTATGCAGTGTTTCTTGTGTTCAAGATGATGA
ATGCAAGTGGGTTTCACTACCATCCCACAGTGATTTCAGTTGGTGTTTGT
GGAGGAAGTAGCAACAGCAAATACGTTTGTTTGGATCTGAATTTGAAAGA
AAATAGGTTGAGAGAACTAGCTTGTCCTAAAGTGAGAAGTGATGGGTGGT
TGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGTCTGAAAGAAGAGCAA
GTGAATGTGAAAATTATGGAGACAACAAGCCATATTTGGAAGTGTGGTTT
TGTTCTTGAAGGAATAGAAATTAGGCCTAAACATGTCTGATATGTGAAGG
CTGAAAACATAAAAAGAATGCAGAATTCTCAGTTTATTTTGATATCTTTT
TCTTTTCTTTTTTTCCATAAGCATTTTTTACAAATATATAAACATTTTAT
TTATATTTATTGTTATTAGTTTAATATAATGTTAGAAGCAGCACAATGGG
TTTGGTGTGTTGCAATGAGTTAATTATTTCTCATTTTAATGATTGGGCCG
GTGATCGGGCCTCATCGCAGCACAATCAGATGCATTGAATCAAGGCAGTT
ACTTTCTGCACCCCTCCAACTTCTAACTGCACCTGACAAGATTTGGAATT
TCAATTTTGTCCCTTCAATTGGAAGAGAATTATCCGATAAGGGGTGGTGT
AGCTCATAAAAGTGTTTCAAAATGGTGAAGTTTAGATTAATATGCTTCCA
GATTGGTATTTGTGGAAGTGCTGGAAGAACATTCTAGAAAAGAAAAGAAA
ATCTAAGAGGTGCAAACTTTGTTCCAAATTCGTGTTTTAAAAAGGACTAC
TTCGTAGAATCCAAGAAAATCATTCTAAATGTT
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protein sequence of Vigun08g014400.1_Vu_IT97K-499-35_v1.1

>Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=260bp
MEFEDLAEGCIAKILSQTSPVDACKLSLVSRTFCSAAESDFVWSSFLLNF
TSLIPPSSLPSSSSKKALYFNLCNHPTIIDQGKKSVQLDKRTGKNCYMFS
ARNLDIEWGDDGHHWEWTSLPESRFEVVAVLRAVCWFDISGKISTVSLSS
ETHYAVFLVFKMMNASGFHYHPTVISVGVCGGSSNSKYVCLDLNLKENRL
RELACPKVRSDGWLEIEMGEFFNSGLKEEQVNVKIMETTSHIWKCGFVLE
GIEIRPKHV*
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mRNA from alignment at Vu08:1236333..1238222+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1; organism=Vigna unguiculata; type=mRNA; length=1890bp; location=Sequence derived from: Vu08:1236333..1238222+ (Vigna unguiculata
ATTTATCTATAAATTCAACTAAATAAATACTCAACAACTTCATTAACATA ATTGTCTAAGCTGTACAACATCCAATTTGTGCAAGCAATTGAATAGTTGA CCAAGTTAACTACACGATCAAAGAAGCAAAAGGCAACTTATATAAGCAAC AAAGCTTCATCTTCATCGTCATCATTCTTATACTGGAAGGAAAAAGAAGA AGCTTTATGAATGGAGTTTGAAGATTTGGCAGAAGGATGCATTGCAAAGA TACTGTCACAAACATCTCCTGTGGATGCATGCAAGCTCTCTTTAGTTTCC AGAACCTTCTGTTCTGCAGCTGAATCTGATTTTGTGTGGTCTTCTTTTCT CCTCAATTTCACCTCTCTCATTCCTCCTTCTTCCCTTCCATCCTCTAGTT CTAAAAAGGCTCTCTATTTCAATCTCTGCAACCACCCCACCATCATTGAT CAGGGCAAAAAGGTGAGTAATTAACACTTTGAGTAATACTTGTTCATGAT TTTGATCAAACATAATTTGGTGATCTGGGGTCATGTAAAAATTTCCCACG AACCCATATGGTTTTGGTGGTTTTAACAAAGTTTAACAAAACCAAGCATT TGTGGTTTCTAACTGAATGAAATGTGTTGTCTCTGAAATCAATGCAGAGT GTTCAGTTGGACAAAAGGACAGGGAAGAACTGTTACATGTTTTCTGCTAG AAATCTGGACATTGAATGGGGTGATGATGGTCACCATTGGGAGTGGACAA GCCTGCCAGAGTCCAGGTAAATTGATTGATTAAGGTTTCAAGAAACATTT TGTCTGAAATTGAAACCTTAATTTTAAGGTTTGTTTGTTGAAATGAAACT ACCTCAGAGCTATGTTTGGTTGTGGTATGAAAAAAAAAACACAACTTTGA TTAGAATTTCGGACATTGAGCAATTGTTGTGTCGGCAGGTTCGAAGTGGT TGCTGTGCTTCGTGCTGTGTGCTGGTTTGACATCAGTGGGAAGATAAGCA CAGTTTCTCTGTCATCAGAGACTCATTATGCAGTGTTTCTTGTGTTCAAG ATGATGAATGCAAGTGGGTTTCACTACCATCCCACAGTGATTTCAGTTGG TGTTTGTGGAGGAAGTAGCAACAGCAAATACGTTTGTTTGGATCTGAATT TGAAAGAAAATAGGTTGAGAGAACTAGCTTGTCCTAAAGTGAGAAGTGAT GGGTGGTTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGTCTGAAAGA AGAGCAAGTGAATGTGAAAATTATGGAGACAACAAGCCATATTTGGAAGT GTGGTTTTGTTCTTGAAGGAATAGAAATTAGGCCTAAACATGTCTGATAT GTGAAGGCTGAAAACATAAAAAGAATGCAGAATTCTCAGTTTATTTTGAT ATCTTTTTCTTTTCTTTTTTTCCATAAGCATTTTTTACAAATATATAAAC ATTTTATTTATATTTATTGTTATTAGTTTAATATAATGTTAGAAGCAGCA CAATGGGTTTGGTGTGTTGCAATGAGTTAATTATTTCTCATTTTAATGAT TGGGCCGGTGATCGGGCCTCATCGCAGCACAATCAGATGCATTGAATCAA GGCAGTTACTTTCTGCACCCCTCCAACTTCTAACTGCACCTGACAAGATT TGGAATTTCAATTTTGTCCCTTCAATTGGAAGAGAATTATCCGATAAGGG GTGGTGTAGCTCATAAAAGTGTTTCAAAATGGTGAAGTTTAGATTAATAT GCTTCCAGATTGGTATTTGTGGAAGTGCTGGAAGAACATTCTAGAAAAGA AAAGAAAATCTAAGAGGTGCAAACTTTGTTCCAAATTCGTGTTTTAAAAA GGACTACTTCGTAGAATCCAAGAAAATCATTCTAAATGTT
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Coding sequence (CDS) from alignment at Vu08:1236333..1238222+

>Vigun08g014400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g014400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g014400.1; organism=Vigna unguiculata; type=CDS; length=780bp; location=Sequence derived from: Vu08:1236333..1238222+ (Vigna unguiculata
ATGGAGTTTGAAGATTTGGCAGAAGGATGCATTGCAAAGATACTGTCACA
AACATCTCCTGTGGATGCATGCAAGCTCTCTTTAGTTTCCAGAACCTTCT
GTTCTGCAGCTGAATCTGATTTTGTGTGGTCTTCTTTTCTCCTCAATTTC
ACCTCTCTCATTCCTCCTTCTTCCCTTCCATCCTCTAGTTCTAAAAAGGC
TCTCTATTTCAATCTCTGCAACCACCCCACCATCATTGATCAGGGCAAAA
AGAGTGTTCAGTTGGACAAAAGGACAGGGAAGAACTGTTACATGTTTTCT
GCTAGAAATCTGGACATTGAATGGGGTGATGATGGTCACCATTGGGAGTG
GACAAGCCTGCCAGAGTCCAGGTTCGAAGTGGTTGCTGTGCTTCGTGCTG
TGTGCTGGTTTGACATCAGTGGGAAGATAAGCACAGTTTCTCTGTCATCA
GAGACTCATTATGCAGTGTTTCTTGTGTTCAAGATGATGAATGCAAGTGG
GTTTCACTACCATCCCACAGTGATTTCAGTTGGTGTTTGTGGAGGAAGTA
GCAACAGCAAATACGTTTGTTTGGATCTGAATTTGAAAGAAAATAGGTTG
AGAGAACTAGCTTGTCCTAAAGTGAGAAGTGATGGGTGGTTGGAGATTGA
GATGGGAGAGTTCTTCAATTCAGGTCTGAAAGAAGAGCAAGTGAATGTGA
AAATTATGGAGACAACAAGCCATATTTGGAAGTGTGGTTTTGTTCTTGAA
GGAATAGAAATTAGGCCTAAACATGTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR025886PP2-like
IPR001810F-box_dom
IPR032675LRR_dom_sf
IPR036047F-box-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding