Vigun08g023800.1

Transcript Overview
NameVigun08g023800.1
Unique NameVigun08g023800.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length531
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:2037570..2038100 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR376Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL485Pisum sativum Cameor genome v1aPisum sativum
psvuL624Pisum sativum Cameor genome v1aPisum sativum
psvuL643Pisum sativum Cameor genome v1aPisum sativum
pvvuL057Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL771Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL337Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL423Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL1129Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1303Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0920Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL073Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL198Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL704Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR597Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR608Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuL390Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL448Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL379Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL560Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR397Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR399Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
avjvuL473Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL599Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL324Cicer arietinum
carvuL387Cicer arietinum
ccavuL432Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL549Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR657Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR677Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvuL227Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL242Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR466Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g023800Vigun08g023800_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g023800.1Vigun08g023800.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g023800.1_Vu_IT97K-499-35_v1.1Vigun08g023800.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g023800.1.v1.1.five_prime_UTR.1Vigun08g023800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g023800.1.v1.1.CDS.1Vigun08g023800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g023800.1.v1.1.three_prime_UTR.1Vigun08g023800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g023800.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 64..92
e-value: 1.9
score: 15.6
coord: 28..56
e-value: 0.022
score: 23.9
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 31..51
e-value: 0.0061
score: 16.0
coord: 68..86
e-value: 1.2E-5
score: 24.5
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 24..59
score: 11.863
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 64..95
score: 10.887
IPR002048EF-hand domainCDDcd00051EFhcoord: 28..84
e-value: 1.37059E-8
score: 45.2313
NoneNo IPR availableGENE3D1.10.238.10coord: 6..94
e-value: 3.3E-12
score: 48.7
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 73..85
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 24..89

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1; organism=Vigna unguiculata; type=mRNA; length=531bp
ATTCTTCCCTCCTCACTCTTTTGAGAAAGATCAAAAGAAAACTTAGTGAA
ACCAAAATATGATAATTCACTCCAACTCATCATTAAAGATAATATGTGTG
CCGAGAAGAAAGAACTTTCCCGAGAGTGTCACGATACACAAAGTAATGAA
TGCATTGAAAGAAGCAGACATGAACAAAGATGGTCATTTCAACAGAGAAG
AACTCAAACATGCTCTCAAAGATTTAGGTTCCTTCTTCCCTGGCTGGAGA
GCCCAATGTGCTTTTAAAAAAATTGATGCCAACAACGACGGTCAAATCAG
TGGTGAGGAAATCGACTCTCTCCTCGAATATCTTCATTCTCATGGTTTTG
GAAAATAAGTCATCCATTATCTTATATATGATACCAAACTATGTATTATA
TAACATAGTTTATGTTGGTGTTTTCAAATAAGATCTACATAAGGTTGGAG
ACAGACACATGATTTATGAGCAACTTTGTTTTTTCGGTACATAAATCAAA
GTTTCCTTCCTTGTGAATTATGCTAATGAAT
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protein sequence of Vigun08g023800.1_Vu_IT97K-499-35_v1.1

>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=100bp
MIIHSNSSLKIICVPRRKNFPESVTIHKVMNALKEADMNKDGHFNREELK
HALKDLGSFFPGWRAQCAFKKIDANNDGQISGEEIDSLLEYLHSHGFGK*
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mRNA from alignment at Vu08:2037570..2038100-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1; organism=Vigna unguiculata; type=mRNA; length=531bp; location=Sequence derived from: Vu08:2037570..2038100- (Vigna unguiculata
ATTCTTCCCTCCTCACTCTTTTGAGAAAGATCAAAAGAAAACTTAGTGAA
ACCAAAATATGATAATTCACTCCAACTCATCATTAAAGATAATATGTGTG
CCGAGAAGAAAGAACTTTCCCGAGAGTGTCACGATACACAAAGTAATGAA
TGCATTGAAAGAAGCAGACATGAACAAAGATGGTCATTTCAACAGAGAAG
AACTCAAACATGCTCTCAAAGATTTAGGTTCCTTCTTCCCTGGCTGGAGA
GCCCAATGTGCTTTTAAAAAAATTGATGCCAACAACGACGGTCAAATCAG
TGGTGAGGAAATCGACTCTCTCCTCGAATATCTTCATTCTCATGGTTTTG
GAAAATAAGTCATCCATTATCTTATATATGATACCAAACTATGTATTATA
TAACATAGTTTATGTTGGTGTTTTCAAATAAGATCTACATAAGGTTGGAG
ACAGACACATGATTTATGAGCAACTTTGTTTTTTCGGTACATAAATCAAA
GTTTCCTTCCTTGTGAATTATGCTAATGAAT
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Coding sequence (CDS) from alignment at Vu08:2037570..2038100-

>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1; organism=Vigna unguiculata; type=CDS; length=300bp; location=Sequence derived from: Vu08:2037570..2038100- (Vigna unguiculata
ATGATAATTCACTCCAACTCATCATTAAAGATAATATGTGTGCCGAGAAG
AAAGAACTTTCCCGAGAGTGTCACGATACACAAAGTAATGAATGCATTGA
AAGAAGCAGACATGAACAAAGATGGTCATTTCAACAGAGAAGAACTCAAA
CATGCTCTCAAAGATTTAGGTTCCTTCTTCCCTGGCTGGAGAGCCCAATG
TGCTTTTAAAAAAATTGATGCCAACAACGACGGTCAAATCAGTGGTGAGG
AAATCGACTCTCTCCTCGAATATCTTCATTCTCATGGTTTTGGAAAATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding