Vigun08g023800.1

Transcript Overview


Name	Vigun08g023800.1
Unique Name	Vigun08g023800.1_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	531

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu08	supercontig	Vu08:2037570..2038100 -	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vuvuR376	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuL485	Pisum sativum Cameor genome v1a	Pisum sativum
psvuL624	Pisum sativum Cameor genome v1a	Pisum sativum
psvuL643	Pisum sativum Cameor genome v1a	Pisum sativum
pvvuL057	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvuL771	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cavuL337	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavuL423	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvuL1129	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccvuL1303	Cajanus cajan Asha genome v1.0	Cajanus cajan
anvuL0920	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvuL073	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL198	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL704	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
vuzwsR597	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuzwsR608	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuL390	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvuL448	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vssvuL379	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vssvuL560	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vuvuaR397	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vuvuaR399	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
avjvuL473	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvuL599	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvuL324		Cicer arietinum
carvuL387		Cicer arietinum
ccavuL432	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavuL549	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vuvumR657	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvumR677	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vstvuL227	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vstvuL288	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvuL242	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvuL302	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vuvunR456	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vuvunR466	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun08g023800	Vigun08g023800_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g023800.1	Vigun08g023800.1_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide
Vigun08g023800.1_Vu_IT97K-499-35_v1.1	Vigun08g023800.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g023800.1.v1.1.five_prime_UTR.1	Vigun08g023800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g023800.1.v1.1.CDS.1	Vigun08g023800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g023800.1.v1.1.three_prime_UTR.1	Vigun08g023800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Vigun08g023800.1 vs.

BLAST of Vigun08g023800.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 64..92 e-value: 1.9 score: 15.6 coord: 28..56 e-value: 0.022 score: 23.9
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 31..51 e-value: 0.0061 score: 16.0 coord: 68..86 e-value: 1.2E-5 score: 24.5
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 24..59 score: 11.863
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 64..95 score: 10.887
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 28..84 e-value: 1.37059E-8 score: 45.2313
None	No IPR available	GENE3D	1.10.238.10		coord: 6..94 e-value: 3.3E-12 score: 48.7
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 73..85
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 24..89

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu08:2037570..2038100-
coding sequence from alignment at Vu08:2037570..2038100-

mRNA sequence

>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1; organism=Vigna unguiculata; type=mRNA; length=531bp
ATTCTTCCCTCCTCACTCTTTTGAGAAAGATCAAAAGAAAACTTAGTGAA
ACCAAAATATGATAATTCACTCCAACTCATCATTAAAGATAATATGTGTG
CCGAGAAGAAAGAACTTTCCCGAGAGTGTCACGATACACAAAGTAATGAA
TGCATTGAAAGAAGCAGACATGAACAAAGATGGTCATTTCAACAGAGAAG
AACTCAAACATGCTCTCAAAGATTTAGGTTCCTTCTTCCCTGGCTGGAGA
GCCCAATGTGCTTTTAAAAAAATTGATGCCAACAACGACGGTCAAATCAG
TGGTGAGGAAATCGACTCTCTCCTCGAATATCTTCATTCTCATGGTTTTG
GAAAATAAGTCATCCATTATCTTATATATGATACCAAACTATGTATTATA
TAACATAGTTTATGTTGGTGTTTTCAAATAAGATCTACATAAGGTTGGAG
ACAGACACATGATTTATGAGCAACTTTGTTTTTTCGGTACATAAATCAAA
GTTTCCTTCCTTGTGAATTATGCTAATGAAT

protein sequence of Vigun08g023800.1_Vu_IT97K-499-35_v1.1

>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=100bp
MIIHSNSSLKIICVPRRKNFPESVTIHKVMNALKEADMNKDGHFNREELK
HALKDLGSFFPGWRAQCAFKKIDANNDGQISGEEIDSLLEYLHSHGFGK*

mRNA from alignment at Vu08:2037570..2038100-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1; organism=Vigna unguiculata; type=mRNA; length=531bp; location=Sequence derived from: Vu08:2037570..2038100- (Vigna unguiculata
ATTCTTCCCTCCTCACTCTTTTGAGAAAGATCAAAAGAAAACTTAGTGAA
ACCAAAATATGATAATTCACTCCAACTCATCATTAAAGATAATATGTGTG
CCGAGAAGAAAGAACTTTCCCGAGAGTGTCACGATACACAAAGTAATGAA
TGCATTGAAAGAAGCAGACATGAACAAAGATGGTCATTTCAACAGAGAAG
AACTCAAACATGCTCTCAAAGATTTAGGTTCCTTCTTCCCTGGCTGGAGA
GCCCAATGTGCTTTTAAAAAAATTGATGCCAACAACGACGGTCAAATCAG
TGGTGAGGAAATCGACTCTCTCCTCGAATATCTTCATTCTCATGGTTTTG
GAAAATAAGTCATCCATTATCTTATATATGATACCAAACTATGTATTATA
TAACATAGTTTATGTTGGTGTTTTCAAATAAGATCTACATAAGGTTGGAG
ACAGACACATGATTTATGAGCAACTTTGTTTTTTCGGTACATAAATCAAA
GTTTCCTTCCTTGTGAATTATGCTAATGAAT

Coding sequence (CDS) from alignment at Vu08:2037570..2038100-

>Vigun08g023800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g023800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g023800.1; organism=Vigna unguiculata; type=CDS; length=300bp; location=Sequence derived from: Vu08:2037570..2038100- (Vigna unguiculata
ATGATAATTCACTCCAACTCATCATTAAAGATAATATGTGTGCCGAGAAG
AAAGAACTTTCCCGAGAGTGTCACGATACACAAAGTAATGAATGCATTGA
AAGAAGCAGACATGAACAAAGATGGTCATTTCAACAGAGAAGAACTCAAA
CATGCTCTCAAAGATTTAGGTTCCTTCTTCCCTGGCTGGAGAGCCCAATG
TGCTTTTAAAAAAATTGATGCCAACAACGACGGTCAAATCAGTGGTGAGG
AAATCGACTCTCTCCTCGAATATCTTCATTCTCATGGTTTTGGAAAATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Search form

Vigun08g023800.1