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Transcript Overview
| Name | Vigun08g033800.1 |
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| Unique Name | Vigun08g033800.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1289 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g033800.1 | Vigun08g033800.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g033800.1_Vu_IT97K-499-35_v1.1 | Vigun08g033800.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g033800.1.v1.1.CDS.4 | Vigun08g033800.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g033800.1.v1.1.CDS.3 | Vigun08g033800.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g033800.1.v1.1.CDS.2 | Vigun08g033800.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g033800.1.v1.1.CDS.1 | Vigun08g033800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun08g033800.1.v1.1.three_prime_UTR.1 | Vigun08g033800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g033800.1.v1.1.five_prime_UTR.1 | Vigun08g033800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | COILS | Coil | Coil | coord: 156..176 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 192..207 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 192..220 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1; organism=Vigna unguiculata; type=mRNA; length=1289bp
ATTGTATTATTTTATTTTTGCAAAAATGGTAAAGAACAACAGTAACAGAG
GAATCAAATCTAGGTTGAGCGGGAAGTAGCTATTGAGTGAGGGTTTTGGT
GGGAATGGATTTTGGATGTTCAGAAGTGAGTGTGTGGAAGGAAGCACTCT
CTGCATACCAATCTCGAATTCAAACACTCTCTCTCGCCAAAAACAAACCC
AATCTGGTTTCTCTCGATGAATTCTACTGCAACCACCTACCTTCCCTCCT
TCGCCAACGAAACCCTAACCCCTTTCTCACCACTTCAGAGCTCTCCAGTC
TCATGCAATGGAAGCTCACGCGCGGCAAGTGGAGGCCGCGTCTGTTGGAT
TTCGTTTCGTCCCTAGACGACGCCGTTGTGAAATCCGCTTCTGAGAAGGC
ATTTCAGAGCCTTCCCGATGTTTCCAAAGCCGTCGATGAACTCACTGTAT
TGAAAGGCGTCGGTCCCGCCACCGCCTCTGCCGTTTTGGCGGCTTTCTCT
CCGCACTTAACCCCTTTCATGTCTGATGAGGCTATGGAGGCAGCTCTTGG
AAACTCAAAAGATTATTCTCTGAAGCAATATCTAAAGTTCGTAGATAAGT
TGCAGATGAAAGCGAAGGAACTAAGTTCAGAAGGGGACTCCTTTACCCCA
TCTGATGTAGAAAGGGCATTGTGGAGTTATGCTGTGGGGCAGTCATCATC
ACCCGATTCAAATCAGGAACCTAAGACCAAACCAAGCAGGAGCTCTAAAA
GGAAGAGAAAAAATTGACACTAGTAGCAGAGCAACAATGTATCTTCTTAT
TAGAGTATAATAGTTATTGCCTTGCTATATTGGGGTTTGTTCTTCTACAT
TAGACAGTACTGATCACTAATCATTATCAGGTATTTTCGTTTTAAATTAT
GGCCAAATTAAAGTTTCATGTTTTTTGTTGACATTCTCTTCTCGCAAATA
TCAGGTAGAGATGGCGTGCGTTTTGGTTAGTGTATGTAGATTGATATTAA
AACTTATAAGTGTATATCCAAATTTGCTTGAACTCAATTAATTTTAGAAT
TAAAGATCAATTCTCAACACGAAATGATATTTCATCATAATTTGATTGAT
TAAATGTTAATCCAAACACGCTCACCAGTTTATAGCCCCTGTTGTTAGTT
AATATGCTTGGTTCTCTCGTAATTTGACTTCATAAATTCCATAACATCTT
AAGAGCACCCTGCAATATTGTAGGTGGTACTTTTATTGAAATGTAGGATG
CACAATAAAGACAGTATTAAGTTTCAtgttaatgattta back to topprotein sequence of Vigun08g033800.1_Vu_IT97K-499-35_v1.1 >Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=221bp
MDFGCSEVSVWKEALSAYQSRIQTLSLAKNKPNLVSLDEFYCNHLPSLLR
QRNPNPFLTTSELSSLMQWKLTRGKWRPRLLDFVSSLDDAVVKSASEKAF
QSLPDVSKAVDELTVLKGVGPATASAVLAAFSPHLTPFMSDEAMEAALGN
SKDYSLKQYLKFVDKLQMKAKELSSEGDSFTPSDVERALWSYAVGQSSSP
DSNQEPKTKPSRSSKRKRKN* back to topmRNA from alignment at Vu08:3141309..3143863- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1; organism=Vigna unguiculata; type=mRNA; length=2555bp; location=Sequence derived from: Vu08:3141309..3143863- (Vigna unguiculata
ATTGTATTATTTTATTTTTGCAAAAATGGTAAAGAACAACAGTAACAGAG
GAATCAAATCTAGGTTGAGCGGGAAGTAGCTATTGAGTGAGGGTTTTGGT
GGGAATGGATTTTGGATGTTCAGAAGTGAGTGTGTGGAAGGAAGCACTCT
CTGCATACCAATCTCGAATTCAAACACTCTCTCTCGCCAAAAACAAACCC
AATCTGGTTTCTCTCGATGAATTCTACTGCAACCACCTACCTTCCCTCCT
TCGCCAACGAAACCCTAACCCCTTTCTCACCACTTCAGAGCTCTCCAGTC
TCATGCAATGGAAGCTCACGCGCGGCAAGTGGAGGTCACTACACTCTCTC
TAACTTTCTCTCACTTTTTTCTGTATGATACCTTAGTGATTGTTTGGGTA
CGTTTTTGTTTTGGTTGAATTTTTTCAGGCCGCGTCTGTTGGATTTCGTT
TCGTCCCTAGACGACGCCGTTGTGAAATCCGCTTCTGAGAAGGCATTTCA
GAGCCTTCCCGATGTTTCCAAAGCCGTCGATGAACTCACTGTATTGAAAG
GCGTCGGTCCCGCCACCGCCTCTGCCGTTTTGGCGGCTTTCTCTCCGCAC
TTAACCCCTTTCATGTCTGATGAGGTCCATTACTCTGTTAACTTGTTCAC
TCAACAACAATTTTCGTTCAAATTATCAAAATATCAAATAAATAATTAAT
CTCTCACATCTACTGCTTCTGTAATTCTAATCCATTCTATAACTTACTCT
TATAATTATTTGATATTTTTATTTTACTTTTTTGACATTTTTTATAATTT
TAGGGACACTTAATTAGTGTTATTATTATTTGAGTAACTAATCCATGCAT
CAAATTAAGTTTATAGCAATAATAATAATATTATTATTATTATTATTATT
ATTATTATTTTAGCTAACCCTGTGTCAGATCGGAACATTAACAAAAAGGA
GAGTTCAAAAGTTAAGACTCCTATTAATAATTATTGACTGGGGAACTTAT
TTTGGGACACTCAAGTTTCGAATTTTTTTAGGAGTTGAGCTGAAGAGTAA
TTTATATACACTTTCTCCCTAAACTCATTGATATACTTCTTCAAGGGTAA
AACTAAGTTCCACTATAACAGACATTAATAATTTACTCCAACAATATTAT
ATGAGCGGGTGGACTTTAGTTCGGAACTAATAATACTAATTTATATTCTT
ACAATTATGATTGGTTAATGTGTAAAATTATATGGACAATATATAAAAAA
TAAGTTCTTATTTTTATTTGAGATTACTAATGGAGTGCATTGCAGGCTAT
GGAGGCAGCTCTTGGAAACTCAAAAGATTATTCTCTGAAGCAATATCTAA
AGTTCGTAGATAAGTTGCAGATGAAAGCGAAGGTATTATTCTGTGCCTTT
CAATGTGAGGATTCATGCTTTTTGTTTAACGTTTTAATGTAGGAAAATGG
GAATAGGTTGATTGTAAAGTATTTGTTGATTGTAAAAGAAGGGAATGTTA
TGCTGATGTAAATAATTTTATCGAATTGAAAAAGTACTCCTTGTTCCAAA
GGAGGCTGTGATTACCAACATATTGTCCTAGGTTTTAGTTGAAGTTGTGT
CGTGTTTCTTGAAAGTGTAAAAAATTATAAACAAGCGTTGTTGATGCAAC
CATGATTGTAGCCGTAATGCAGTTGTGGAGACTCCAAAAACTTCCATGCC
GCAACTGCAATTCAGACCATTTTTAGACACTTGATATTATCTCTCTTTTG
CGTTTGATTTTGGCATGAATTTGGTGCCGAGGGACAATCATGATTTTTTT
TAACGTGAAAATCTTGTCATAAGGTGTGGACTGGAACTATAGATGAACTT
ACATCCTAGGAATTTGGTTGTGGTAATTTGCAGGAACTAAGTTCAGAAGG
GGACTCCTTTACCCCATCTGATGTAGAAAGGGCATTGTGGAGTTATGCTG
TGGGGCAGTCATCATCACCCGATTCAAATCAGGAACCTAAGACCAAACCA
AGCAGGAGCTCTAAAAGGAAGAGAAAAAATTGACACTAGTAGCAGAGCAA
CAATGTATCTTCTTATTAGAGTATAATAGTTATTGCCTTGCTATATTGGG
GTTTGTTCTTCTACATTAGACAGTACTGATCACTAATCATTATCAGGTAT
TTTCGTTTTAAATTATGGCCAAATTAAAGTTTCATGTTTTTTGTTGACAT
TCTCTTCTCGCAAATATCAGGTAGAGATGGCGTGCGTTTTGGTTAGTGTA
TGTAGATTGATATTAAAACTTATAAGTGTATATCCAAATTTGCTTGAACT
CAATTAATTTTAGAATTAAAGATCAATTCTCAACACGAAATGATATTTCA
TCATAATTTGATTGATTAAATGTTAATCCAAACACGCTCACCAGTTTATA
GCCCCTGTTGTTAGTTAATATGCTTGGTTCTCTCGTAATTTGACTTCATA
AATTCCATAACATCTTAAGAGCACCCTGCAATATTGTAGGTGGTACTTTT
ATTGAAATGTAGGATGCACAATAAAGACAGTATTAAGTTTCATGTTAATG
ATTTA back to topCoding sequence (CDS) from alignment at Vu08:3141309..3143863- >Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1; organism=Vigna unguiculata; type=CDS; length=663bp; location=Sequence derived from: Vu08:3141309..3143863- (Vigna unguiculata
ATGGATTTTGGATGTTCAGAAGTGAGTGTGTGGAAGGAAGCACTCTCTGC
ATACCAATCTCGAATTCAAACACTCTCTCTCGCCAAAAACAAACCCAATC
TGGTTTCTCTCGATGAATTCTACTGCAACCACCTACCTTCCCTCCTTCGC
CAACGAAACCCTAACCCCTTTCTCACCACTTCAGAGCTCTCCAGTCTCAT
GCAATGGAAGCTCACGCGCGGCAAGTGGAGGCCGCGTCTGTTGGATTTCG
TTTCGTCCCTAGACGACGCCGTTGTGAAATCCGCTTCTGAGAAGGCATTT
CAGAGCCTTCCCGATGTTTCCAAAGCCGTCGATGAACTCACTGTATTGAA
AGGCGTCGGTCCCGCCACCGCCTCTGCCGTTTTGGCGGCTTTCTCTCCGC
ACTTAACCCCTTTCATGTCTGATGAGGCTATGGAGGCAGCTCTTGGAAAC
TCAAAAGATTATTCTCTGAAGCAATATCTAAAGTTCGTAGATAAGTTGCA
GATGAAAGCGAAGGAACTAAGTTCAGAAGGGGACTCCTTTACCCCATCTG
ATGTAGAAAGGGCATTGTGGAGTTATGCTGTGGGGCAGTCATCATCACCC
GATTCAAATCAGGAACCTAAGACCAAACCAAGCAGGAGCTCTAAAAGGAA
GAGAAAAAATTGA back to top
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