Vigun08g033800.1

Transcript Overview


Name	Vigun08g033800.1
Unique Name	Vigun08g033800.1_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	1289

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu08	supercontig	Vu08:3141309..3143863 -	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vuvuL269	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vuvuR376	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuL090	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crvuL306	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pvvuL057	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvuL383	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvuL771	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cavuL337	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caivuL0479	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caivuL0595	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
cavuL423	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvuL0925	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccvuL1064	Cajanus cajan Asha genome v1.0	Cajanus cajan
anvuL0117	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0368	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0744	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0750	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvuL072	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL533	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL704	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
vuzwsR578	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuzwsR597	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuzwsR608	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
tifvuL093	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL086	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuL288	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL268	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuL450	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvuL562	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL421	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvuL522	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvuL390	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvuL448	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vssvuL560	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vssvuL725	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vuvuaR397	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vuvuaR399	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuL306	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvuL391	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvuL249	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvuL473	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvuL564	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvuL599	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvuL324		Cicer arietinum
carvuL387		Cicer arietinum
carvuL608		Cicer arietinum
ccavuL162	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavuL332	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavuL433	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vuvumR645	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvumR657	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvumR677	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvvaR690	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vuvvaR715	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vstvuL076	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vstvuL227	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vstvuL288	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvuL242	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvuL302	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvuL056	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvuL677	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vuvunR456	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vuvunR466	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Cr_05274.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
jg35453.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
XM_058869104.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Cc_v2.0_11502.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Va07G066810.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vfaba.Tiffany.R1.3g178280.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vum_03G01816.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
LR48_mrnaVigan07g261600	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigan.03G259300.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vfaba.Hedin2.R1.3g218560.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-XM_014648426.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigst.03G163100.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-XM_004498886.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
evm.model.Chr08.412	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Ca_09470.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Ca_09209	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
PvulFLAVERTChr01.1000228	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Psat06G0050800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Phvul.001G031500.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigun08g033800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun08g033800	Vigun08g033800_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g033800.1	Vigun08g033800.1_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide
Vigun08g033800.1_Vu_IT97K-499-35_v1.1	Vigun08g033800.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g033800.1.v1.1.CDS.4	Vigun08g033800.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g033800.1.v1.1.CDS.3	Vigun08g033800.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g033800.1.v1.1.CDS.2	Vigun08g033800.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g033800.1.v1.1.CDS.1	Vigun08g033800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g033800.1.v1.1.three_prime_UTR.1	Vigun08g033800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g033800.1.v1.1.five_prime_UTR.1	Vigun08g033800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Vigun08g033800.1 vs.

BLAST of Vigun08g033800.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 156..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..220

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu08:3141309..3143863-
coding sequence from alignment at Vu08:3141309..3143863-

mRNA sequence

>Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1; organism=Vigna unguiculata; type=mRNA; length=1289bp
ATTGTATTATTTTATTTTTGCAAAAATGGTAAAGAACAACAGTAACAGAG
GAATCAAATCTAGGTTGAGCGGGAAGTAGCTATTGAGTGAGGGTTTTGGT
GGGAATGGATTTTGGATGTTCAGAAGTGAGTGTGTGGAAGGAAGCACTCT
CTGCATACCAATCTCGAATTCAAACACTCTCTCTCGCCAAAAACAAACCC
AATCTGGTTTCTCTCGATGAATTCTACTGCAACCACCTACCTTCCCTCCT
TCGCCAACGAAACCCTAACCCCTTTCTCACCACTTCAGAGCTCTCCAGTC
TCATGCAATGGAAGCTCACGCGCGGCAAGTGGAGGCCGCGTCTGTTGGAT
TTCGTTTCGTCCCTAGACGACGCCGTTGTGAAATCCGCTTCTGAGAAGGC
ATTTCAGAGCCTTCCCGATGTTTCCAAAGCCGTCGATGAACTCACTGTAT
TGAAAGGCGTCGGTCCCGCCACCGCCTCTGCCGTTTTGGCGGCTTTCTCT
CCGCACTTAACCCCTTTCATGTCTGATGAGGCTATGGAGGCAGCTCTTGG
AAACTCAAAAGATTATTCTCTGAAGCAATATCTAAAGTTCGTAGATAAGT
TGCAGATGAAAGCGAAGGAACTAAGTTCAGAAGGGGACTCCTTTACCCCA
TCTGATGTAGAAAGGGCATTGTGGAGTTATGCTGTGGGGCAGTCATCATC
ACCCGATTCAAATCAGGAACCTAAGACCAAACCAAGCAGGAGCTCTAAAA
GGAAGAGAAAAAATTGACACTAGTAGCAGAGCAACAATGTATCTTCTTAT
TAGAGTATAATAGTTATTGCCTTGCTATATTGGGGTTTGTTCTTCTACAT
TAGACAGTACTGATCACTAATCATTATCAGGTATTTTCGTTTTAAATTAT
GGCCAAATTAAAGTTTCATGTTTTTTGTTGACATTCTCTTCTCGCAAATA
TCAGGTAGAGATGGCGTGCGTTTTGGTTAGTGTATGTAGATTGATATTAA
AACTTATAAGTGTATATCCAAATTTGCTTGAACTCAATTAATTTTAGAAT
TAAAGATCAATTCTCAACACGAAATGATATTTCATCATAATTTGATTGAT
TAAATGTTAATCCAAACACGCTCACCAGTTTATAGCCCCTGTTGTTAGTT
AATATGCTTGGTTCTCTCGTAATTTGACTTCATAAATTCCATAACATCTT
AAGAGCACCCTGCAATATTGTAGGTGGTACTTTTATTGAAATGTAGGATG
CACAATAAAGACAGTATTAAGTTTCAtgttaatgattta

protein sequence of Vigun08g033800.1_Vu_IT97K-499-35_v1.1

>Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=221bp
MDFGCSEVSVWKEALSAYQSRIQTLSLAKNKPNLVSLDEFYCNHLPSLLR
QRNPNPFLTTSELSSLMQWKLTRGKWRPRLLDFVSSLDDAVVKSASEKAF
QSLPDVSKAVDELTVLKGVGPATASAVLAAFSPHLTPFMSDEAMEAALGN
SKDYSLKQYLKFVDKLQMKAKELSSEGDSFTPSDVERALWSYAVGQSSSP
DSNQEPKTKPSRSSKRKRKN*

mRNA from alignment at Vu08:3141309..3143863-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1; organism=Vigna unguiculata; type=mRNA; length=2555bp; location=Sequence derived from: Vu08:3141309..3143863- (Vigna unguiculata
ATTGTATTATTTTATTTTTGCAAAAATGGTAAAGAACAACAGTAACAGAG
GAATCAAATCTAGGTTGAGCGGGAAGTAGCTATTGAGTGAGGGTTTTGGT
GGGAATGGATTTTGGATGTTCAGAAGTGAGTGTGTGGAAGGAAGCACTCT
CTGCATACCAATCTCGAATTCAAACACTCTCTCTCGCCAAAAACAAACCC
AATCTGGTTTCTCTCGATGAATTCTACTGCAACCACCTACCTTCCCTCCT
TCGCCAACGAAACCCTAACCCCTTTCTCACCACTTCAGAGCTCTCCAGTC
TCATGCAATGGAAGCTCACGCGCGGCAAGTGGAGGTCACTACACTCTCTC
TAACTTTCTCTCACTTTTTTCTGTATGATACCTTAGTGATTGTTTGGGTA
CGTTTTTGTTTTGGTTGAATTTTTTCAGGCCGCGTCTGTTGGATTTCGTT
TCGTCCCTAGACGACGCCGTTGTGAAATCCGCTTCTGAGAAGGCATTTCA
GAGCCTTCCCGATGTTTCCAAAGCCGTCGATGAACTCACTGTATTGAAAG
GCGTCGGTCCCGCCACCGCCTCTGCCGTTTTGGCGGCTTTCTCTCCGCAC
TTAACCCCTTTCATGTCTGATGAGGTCCATTACTCTGTTAACTTGTTCAC
TCAACAACAATTTTCGTTCAAATTATCAAAATATCAAATAAATAATTAAT
CTCTCACATCTACTGCTTCTGTAATTCTAATCCATTCTATAACTTACTCT
TATAATTATTTGATATTTTTATTTTACTTTTTTGACATTTTTTATAATTT
TAGGGACACTTAATTAGTGTTATTATTATTTGAGTAACTAATCCATGCAT
CAAATTAAGTTTATAGCAATAATAATAATATTATTATTATTATTATTATT
ATTATTATTTTAGCTAACCCTGTGTCAGATCGGAACATTAACAAAAAGGA
GAGTTCAAAAGTTAAGACTCCTATTAATAATTATTGACTGGGGAACTTAT
TTTGGGACACTCAAGTTTCGAATTTTTTTAGGAGTTGAGCTGAAGAGTAA
TTTATATACACTTTCTCCCTAAACTCATTGATATACTTCTTCAAGGGTAA
AACTAAGTTCCACTATAACAGACATTAATAATTTACTCCAACAATATTAT
ATGAGCGGGTGGACTTTAGTTCGGAACTAATAATACTAATTTATATTCTT
ACAATTATGATTGGTTAATGTGTAAAATTATATGGACAATATATAAAAAA
TAAGTTCTTATTTTTATTTGAGATTACTAATGGAGTGCATTGCAGGCTAT
GGAGGCAGCTCTTGGAAACTCAAAAGATTATTCTCTGAAGCAATATCTAA
AGTTCGTAGATAAGTTGCAGATGAAAGCGAAGGTATTATTCTGTGCCTTT
CAATGTGAGGATTCATGCTTTTTGTTTAACGTTTTAATGTAGGAAAATGG
GAATAGGTTGATTGTAAAGTATTTGTTGATTGTAAAAGAAGGGAATGTTA
TGCTGATGTAAATAATTTTATCGAATTGAAAAAGTACTCCTTGTTCCAAA
GGAGGCTGTGATTACCAACATATTGTCCTAGGTTTTAGTTGAAGTTGTGT
CGTGTTTCTTGAAAGTGTAAAAAATTATAAACAAGCGTTGTTGATGCAAC
CATGATTGTAGCCGTAATGCAGTTGTGGAGACTCCAAAAACTTCCATGCC
GCAACTGCAATTCAGACCATTTTTAGACACTTGATATTATCTCTCTTTTG
CGTTTGATTTTGGCATGAATTTGGTGCCGAGGGACAATCATGATTTTTTT
TAACGTGAAAATCTTGTCATAAGGTGTGGACTGGAACTATAGATGAACTT
ACATCCTAGGAATTTGGTTGTGGTAATTTGCAGGAACTAAGTTCAGAAGG
GGACTCCTTTACCCCATCTGATGTAGAAAGGGCATTGTGGAGTTATGCTG
TGGGGCAGTCATCATCACCCGATTCAAATCAGGAACCTAAGACCAAACCA
AGCAGGAGCTCTAAAAGGAAGAGAAAAAATTGACACTAGTAGCAGAGCAA
CAATGTATCTTCTTATTAGAGTATAATAGTTATTGCCTTGCTATATTGGG
GTTTGTTCTTCTACATTAGACAGTACTGATCACTAATCATTATCAGGTAT
TTTCGTTTTAAATTATGGCCAAATTAAAGTTTCATGTTTTTTGTTGACAT
TCTCTTCTCGCAAATATCAGGTAGAGATGGCGTGCGTTTTGGTTAGTGTA
TGTAGATTGATATTAAAACTTATAAGTGTATATCCAAATTTGCTTGAACT
CAATTAATTTTAGAATTAAAGATCAATTCTCAACACGAAATGATATTTCA
TCATAATTTGATTGATTAAATGTTAATCCAAACACGCTCACCAGTTTATA
GCCCCTGTTGTTAGTTAATATGCTTGGTTCTCTCGTAATTTGACTTCATA
AATTCCATAACATCTTAAGAGCACCCTGCAATATTGTAGGTGGTACTTTT
ATTGAAATGTAGGATGCACAATAAAGACAGTATTAAGTTTCATGTTAATG
ATTTA

Coding sequence (CDS) from alignment at Vu08:3141309..3143863-

>Vigun08g033800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g033800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g033800.1; organism=Vigna unguiculata; type=CDS; length=663bp; location=Sequence derived from: Vu08:3141309..3143863- (Vigna unguiculata
ATGGATTTTGGATGTTCAGAAGTGAGTGTGTGGAAGGAAGCACTCTCTGC
ATACCAATCTCGAATTCAAACACTCTCTCTCGCCAAAAACAAACCCAATC
TGGTTTCTCTCGATGAATTCTACTGCAACCACCTACCTTCCCTCCTTCGC
CAACGAAACCCTAACCCCTTTCTCACCACTTCAGAGCTCTCCAGTCTCAT
GCAATGGAAGCTCACGCGCGGCAAGTGGAGGCCGCGTCTGTTGGATTTCG
TTTCGTCCCTAGACGACGCCGTTGTGAAATCCGCTTCTGAGAAGGCATTT
CAGAGCCTTCCCGATGTTTCCAAAGCCGTCGATGAACTCACTGTATTGAA
AGGCGTCGGTCCCGCCACCGCCTCTGCCGTTTTGGCGGCTTTCTCTCCGC
ACTTAACCCCTTTCATGTCTGATGAGGCTATGGAGGCAGCTCTTGGAAAC
TCAAAAGATTATTCTCTGAAGCAATATCTAAAGTTCGTAGATAAGTTGCA
GATGAAAGCGAAGGAACTAAGTTCAGAAGGGGACTCCTTTACCCCATCTG
ATGTAGAAAGGGCATTGTGGAGTTATGCTGTGGGGCAGTCATCATCACCC
GATTCAAATCAGGAACCTAAGACCAAACCAAGCAGGAGCTCTAAAAGGAA
GAGAAAAAATTGA

Search form

Vigun08g033800.1