Vigun08g038300.1

Transcript Overview
NameVigun08g038300.1
Unique NameVigun08g038300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1099
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:3699952..3706249 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g038300Vigun08g038300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g038300.1Vigun08g038300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g038300.1_Vu_IT97K-499-35_v1.1Vigun08g038300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g038300.1.v1.1.CDS.5Vigun08g038300.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g038300.1.v1.1.CDS.4Vigun08g038300.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g038300.1.v1.1.CDS.3Vigun08g038300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g038300.1.v1.1.CDS.2Vigun08g038300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g038300.1.v1.1.CDS.1Vigun08g038300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g038300.1.v1.1.three_prime_UTR.1Vigun08g038300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g038300.1.v1.1.five_prime_UTR.2Vigun08g038300.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun08g038300.1.v1.1.five_prime_UTR.1Vigun08g038300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.535e-47
Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 1
Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
            M+A  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI V+GELDE+LD++LD SKLRAHPLKPV+H
Sbjct:    1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_DICDI (Probable U6 snRNA-associated Sm-like protein LSm8 OS=Dictyostelium discoideum OX=44689 GN=lsm8 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.559e-20
Identity = 42/92 (45.65%), Postives = 73/92 (79.35%), Query Frame = 1
Query:   19 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
            LES + + + V+T DGR+I+G L+G DQ  N++L++ HERVYS  EG++ + LG+++I+GD+++V+GE+D++LD  L+L ++ A P+KP++H
Sbjct:    4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSD-EGIEVIPLGVHLIKGDDVAVIGEVDDELDKKLNLKEIIAEPMKPIVH 94          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_SCHPO (U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm8 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.976e-19
Identity = 39/92 (42.39%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   19 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
            L   ++Q + VITNDGR ++G LKGFD  TN+IL +S ER+ S  + ++ + LG+Y++RG+N+++VG ++E+LDS ++ +K+R   +  V+H
Sbjct:    3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1A_ARATH (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.801e-11
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   16 GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
             L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG+N+ ++G
Sbjct:   14 SLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRGENVVLIG 80          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.954e-11
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
            MS+G G E  VD+ + V+  DGR  +G+++ FDQ  NI+L ++ ER+Y   +      LGL+ IRGDN+ ++G
Sbjct:    1 MSSGLGDE--VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIY-VGDCYSDKNLGLFFIRGDNVVILG 70          
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1B_ARATH (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.360e-10
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    7 AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
            AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++G
Sbjct:    4 AGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIG 80          
The following BLAST results are available for this feature:
BLAST of Vigun08g038300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
LSM8_ARATH2.535e-4785.71Sm-like protein LSM8 OS=Arabidopsis thaliana OX=37... [more]
LSM8_PONAB1.530e-3161.70U6 snRNA-associated Sm-like protein LSm8 OS=Pongo ... [more]
LSM8_MOUSE1.530e-3161.70U6 snRNA-associated Sm-like protein LSm8 OS=Mus mu... [more]
LSM8_HUMAN1.530e-3161.70U6 snRNA-associated Sm-like protein LSm8 OS=Homo s... [more]
LSM8_BOVIN1.530e-3161.70U6 snRNA-associated Sm-like protein LSm8 OS=Bos ta... [more]
LSM8_DICDI2.559e-2045.65Probable U6 snRNA-associated Sm-like protein LSm8 ... [more]
LSM8_SCHPO8.976e-1942.39U6 snRNA-associated Sm-like protein LSm8 OS=Schizo... [more]
LSM1A_ARATH4.801e-1139.71Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3... [more]
LSM1_DICDI4.954e-1141.10Probable U6 snRNA-associated Sm-like protein LSm1 ... [more]
LSM1B_ARATH6.360e-1038.46Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..74
e-value: 3.1E-17
score: 73.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..73
e-value: 8.2E-18
score: 63.9
NoneNo IPR availableGENE3D2.30.30.100coord: 6..97
e-value: 3.0E-26
score: 93.6
IPR034103Sm-like protein Lsm8CDDcd01727LSm8coord: 5..94
e-value: 1.917E-47
score: 144.591
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..81

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=mRNA; length=1099bp
AGTGGCGGCAAACTCCATTATTATCGTTGTCACTTTCATCCAAATTCCAA
AACCCAGACAAGGCTTAAAGGTATTAGGGTTTTCTTTCTCCATTATTATC
GTTGCCACTGCCAGACTTATTCCTTCATTCCTCTCACACTCTCTTCTCCT
CCTCCTCCACCACCCGCGTTTTGGGAAACCAGAAGAGAGCACCCTCGTTT
CTCCTCCACCCACGTCAAGAAACACGAAGGCAGAGTGCAGGCCATTCACG
GCGTCTCCTTTCTCCTCCACCGTGACATCCACCACGTCGCTGGCAGGGGC
AGCAGCGAGAGAACGCAGCGCCACCATCGGACTGCGATTGACGGACGATT
CCGACCGCCACGACCACCACGAACACAGGGGTGAGATTGTTATCTAGCTA
AAAAGCATGTCAGCTGGGCCTGGACTTGAGTCCCTTGTAGATCAGACAAT
TTCAGTCATTACAAATGATGGACGGAATATAGTGGGAGTCCTGAAGGGTT
TTGACCAGGCCACAAATATAATTCTTGATGAGTCCCATGAACGTGTTTAT
TCTACAAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAG
GGGTGACAACATAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTA
ATCTGGATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCAT
TGAGTGAAAAGAGTGGGTTTTGCGGCACTTTATACCAAGTACGCTGTGAA
ACTCTCTAAGAATATGCAGATAACAGAACTTTTCTAATATTCTGATTCTA
TTAAGCATGTAAGTTTTGTCAAACAAATGAATGCAACAAATTTGTGACTA
TCTGACGTGAAGAACTGTCCTCTATTTGGTTAAAATTGATACGGAAGTTA
TTTACAAGTGAAAAATGTGTATGATTATAGTTATTTTAAAAAACTTATAT
TTTACAAAAAGGAAAAACTCTTTCTTTTTTCTTTTTCTGTGTGAATTGAG
TGCAGCATGAAGAAGGCATGTGAAATTGATTATTGAGGGGGAAGAGGATT
CGAATGTTAACAAACACGTGGTGGCGGCATAAGAACATAATCTTAATTG
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protein sequence of Vigun08g038300.1_Vu_IT97K-499-35_v1.1

>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=99bp
MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST
KEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH*
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mRNA from alignment at Vu08:3699952..3706249-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=mRNA; length=6298bp; location=Sequence derived from: Vu08:3699952..3706249- (Vigna unguiculata
AGTGGCGGCAAACTCCATTATTATCGTTGTCACTTTCATCCAAATTCCAA AACCCAGACAAGGCTTAAAGGTATTAGGGTTTTCTTTCTCCATTATTATC GTTGCCACTGCCAGACTTATTCCTTCATTCCTCTCACACTCTCTTCTCCT CCTCCTCCACCACCCGCGTTTTGGGAAACCAGAAGAGAGCACCCTCGTTT CTCCTCCACCCACGTCAAGAAACACGAAGGCAGAGTGCAGGCCATTCACG GCGTCTCCTTTCTCCTCCACCGTGACATCCACCACGTCGCTGGCAGGGGC AGCAGCGAGAGAACGCAGCGCCACCATCGGACTGCGATTGACGGACGATT CCGACCGCCACGACCACCACGAACACAGGTTTGTTTGTAATTTGCGTTCT GGTTCCCTTTTCTTTCGATTTGTAACCTAAATTTATGATTTTCGTAACCC TAAAATTGGTTTCCTGTAATTGGAAGTTATGGTGTATGTGTGGTTGTTGT TGCTGCGATTTGCCCTTGTTTGGATTGGACCCATTCTGTGAATCATAATT GTTGTGCTGTTGTTGGTTAAATTTTCCCCCAATTTCAATTTCGTAGTTGT TGCCGTTTTGGTCTGGTGGTGATGTTCATTTCTTTTTTCCTTGTTTTTCT AGTGTTACTATTTTTTATCTGACTGTGTGATAGGCTGATAGCTGTGGTTG TTTTCTTTGTTTGTCTGTTTATCTGTAATCATGTTGGAGATATGTGGAGA ACATGTATTTCATCGTTGCACTGTGATCAAATAAATACTGCCACTGTTTC ATATTATTCTATCATCTTTGAGACAAAATTATGTTCTTCATTAATGATTG AATTATATGATAGAAAGTACCAAGTTGCAAAGTTGTATGTGCCGTGTTTG CAAAGCTGGGATTGAGTTGTTTGGCATTAACTTAAATTGAAATTTGCTTA TACACTGCAGTATATTTGATGTAGAACTATAATGCCACCTCCTTTTTAAC TGTCAAGAGTACTCTAATTTGTTTGAGGCATCTCTACCGGGGTTTGATGA TGGGGAGATTTCAGAAGATGCTCCTGTTGATTTGGATGGTTTAGATGCTT CTGCAGCACATGTTGCCAAACAAATTATACGACCTCTCATCCATAATTAA TGCTTCTGTTTTTTTTATGTACTTGCTTGCACTTTGGTTATGCTCCATGC CTAAAGTACTCTAATTCAGACTTGTTATTGATGTTGCAGCAGTGTCTTGA TGACTTGCAGTGTCATCTATAAGGATGTTTGATTTAGGAGCCAGTTGGTG CCACCACTTTATGCACCATAACATTTACCTTTTAGGGTTTTTTCAATGAG ATAAACTTAGACCCAATAATTACAAGGTATATGGAACAGCTAATGTGTAT ATCAACAAAAAGGAGATATCCTGTGATCATTGTCCATGGAGGATGTGTTT ATAGGGTAGGGGAGAAGTAGCAAAGGGAAGAATGGAAATTGGCTAGGCAT TTGCACTGGGGACAGAGTTGGCATCTTGCAACTATAGTTGCTGTCTTCTT GCCTGCTTGCCATTTTCTGTCTTCCTGGTTTCTTTTTCTAAGCTGGAATT ATATTGCTGCTGTAAAAAAGTTCTCTTAGAATATCATCTATTTATTTTCA TATACTACCAGTTTCCATTAGGTTTTGTTAGGTCATATCATTTAAGATTT TTTTGTTTATTTTTAAGAATCAAAAAAAAGATGTTTGAGGACCGTGAATC CTAGTAATGTGTCACAAAGGAATCGAGGTGTGCTTAACGTGAGATATATG ATTTTATCTTCCTGCTCAATGCTTTTCCTTTTGTAACAACCAAGGTGCTC AGAAAAAAAAAAGCCACTTGTATCAGAACGGTTGATGATCTAGTCCTCCA GTTGTGCCTTACTAAATTGGATTTTCTATATCTATGGGAATTTTTAATAC ATATATTTGGTATGACACTTGTGAAACATGCATAAAGCCTGCCCCAATTG AAACTTGGTAGCTCGGGTTGTATCTTCTCTAGAATCTCACTCCCACAGGC TTGGTGGGAGATTTAGCAAATGAGAGTAGTTTTATGTAATTCGGAATGGA AATACGAGAATGGGCCCAGCGATCTCTTTGCTAACATGTTCACATCAACA ATTCAAGCCTTATCATATTTATAGTACACACAAATACATAAAACTATGGT AAGATACACTTTACTGTCATTGATAAAATAGTAAGGAACTCCAAGAGATG CTTTCTTTCAATAGGAATCAATCTTTAATTTATTATACTCCATTATAAAA AAAATTACAGATTTTAACAAGTTCATGCTAGTATTACTATTATTTTAGCT GGGAACAACTTAAGAATTTGTTTTTTTGACTAATGCGGGTGGCGGGGCTT GCTTGGTTGCTCACGTTCAGTGCATGTAGCTTCTCCTCGTTGTTCCATCT TCTTGGTTCCATAATTTCATGTCCAATTGGCTGTGCTATGGTATCTTGAA TCAAACAAATCCAACATATTAGAAGTAAACAACAGTTTTATGTTTGATGC CTCTGCAATTCTCGCTCAGTCTGGGAAAACTAAACCAATTAGACACTTTA TCAACTCTTGCTCTATTGTTGCATAGAAATCATTCAAATAAACCATCATC TTCTCCATTCAGTTGAATCCCTGACCTGCCCTTTTAGGCCTTTATTTGAT GGCCATTGTGGTTGTGGTTCTGACTTTTCTGCCAATATCGGTTGACTTTG ACATCTAGTACAAAAGCCTCAACTTTTTTAACTGTTGTTTTAAGGTGATT CACAATCCCTCTGGAATGACTGAAATGTAGAACTGGAGGGAAAAATGTGG TTGTTTTGCCCTTAGGATGGTAGTTGTCCACTGCTGTTTATCACAATTTA TGCTTGGAATTGGGAACTTATTCATGCAAATATGTTTTATTGACCAAATA CATTTTTCTTGGTGCTAAATCATTGTCAACTTGATTTTGATCTGAGATTG ATAAACACAGTAGGATATGTTGCATAATATATAATGTATGATTAAATTTT TTTCCATAATTATGCATAGTAAAATTGTTAGTAATCTTTCATGAACATTT TCCGTCGTTATTTTTTTATGCAACCTGGATGTCATAACCACTAGTAATTT GGTGTTAACATGTAAATTCTGCTGTTGAAGTTAACACTTGATTTTGGTTC GGGAGTTGTGGCATCATATTTCTCCACTACCCTGATTTTAGCTGGTTCTG AATTTTCATTTGCATTGCTTTAGTTGATGTTTTGGCATTGAAACTTGTAC AGGGGTGAGATTGTTATCTAGCTAAAAAGCATGTCAGCTGGGCCTGGACT TGAGTCCCTTGTAGATCGTAAGCCATCTATAAATATTTATGTTTTGCTAT GATGTTTTATATTCTATACATAGCTATGTTATTTACTGTGCTTATCAATG ACAATTATTTTAGTTAATTAAGCATTGGTAATTGCTATCCCTTACTGAAT CTTTGGGTTGTTGACAGAGACAATTTCAGTCATTACAAATGATGGACGGA ATATAGTGGTAAGCTTTTGTATATGAACAAAATTCAGCTTTTTTGTCAGT TTGTTGTGTTTTAATAAGTGTCATTGCTCAAACTTCTAATTTCTCTGTTT TTTTGTTCAGGGAGTCCTGAAGGGTTTTGACCAGGCCACAAATATAATTC TTGATGAGTCCCATGAACGTGTTTATTCTACAAAGGTATGCTGAAACTAT GCAGTTGTAGAAACATTCCTTCAAAGATTAATGAGCCATAACTTTAGTGA ACTTTGATATGTAGCTTCAAAAGTTAGTTCCTTAAAATTGGACATTCTCA CTAGTGAGGGTAAAGTAAGCCTATTTTTGCCATTCAATGTTTTAAGACTT AGATTGACCCTTTCCGTTATTATGAAACACATAAACCTTATCCCTCTTGC CCACTTGTTCTCTCTATTAGATGACAAGGGAGGCTATGCAGTATTAGATT CTGCATTAGGCAAAGGGAGGCTATGCAGTACTAGATCCATGTCCACCACG CCAAATGTTAGATATACTTGAGAGTGAGGCATTTTTCCATGACTAAGAAA GACCTTGCAAAACTGGTTTGGTAATTCCAACATTGGCAACAACCACAATA TTTTTATCTTACTAGGAGAGGTCTGTTACATGAATTACACTACACCATTG CCTTTGGTGAAAAACCAAATTCTGAAGGATACTATTCATCATGAGACTCC TTTGAGTAATTTCCTTCTATGTCTCCCTTTACTCATTTTCACAAAACTGA ATCATATGATATGCTCTCTTCATCCGTCTCTAATAGCCTTTGAAAATGTC TGTTGGTATGGCATCTATGATTTACCAAATATTTTTCCTCTGTTCCTTGT AATTGCACTATATATAATCACTTTTACACTTAATGAAAATCCCTTTGGTT CTATAATTCTCACTCCCAAAATTTAACTACTTTTTCATGATTCAACTTGT TAATTTTCGTCCATTTTTGGTTGAAGAAAATTTACTTTCTTTGCATTTAA TCAATGTTCCCCCTGATATTTTTGTCTGTTTCATAGATATTTGTCTCTTA TATGTTGTTTGTGAGCACTGGAATTTTCCCCTTCAATTTGAGGACAAGAA CTTCCTAAAATAAAGATAAAATGCTGGAATACTTCTCCGCCTTTTTTGCA TTCATTTCAGTGTTTTTATAGGAAGAGAATTCCTATCCATCTATTGGCCT TCTGCAGCAAGGAAGGGAATGACAGAATTAGTAATAATGGAATGAAAATG GAAGCTTGTTAAGAAATCTTAAATAACAAACTCAGAAAATAAATTTAATA TTCTAGGAATTTAGTCTCTGAAATGCACATGTTTGGAGACATTTCTCTTG AGCCTGATGACTATTGACCCAATGAAGCTTTGGACCTTCCTTAGCATTTC CTGAATTCCTGAATTCTTCTCCATGTTGGGCTCCCCATCATATTATTGCT ACTTCTATCTTGAAAATTATCTCTCAATATAGGCCTCTGCCCCGACAATG ATTGTTGCATTTTTTTCTTCTATTTTTTGTTGTGCTCTTCTCTATTTTAT GTATATGCTGCATCTATCTTTTTCTCCATATCTGGATCCTTGAGTACAAG TGATTTTGTGTGTAAGGGAAGTAGAATGCAAGGTGAAGAAAAATGAAATG GAAGAGGGATTGTTAGCTTAATGATGAGACTAAAAAAACTAAAGCCTTCT GTTTTTGGGGGTTCACAAAGTCTAATAATGCGTGCTTGTCTCCGGAAGCC CCATTGTGTCTTTCCTAATATACATGCATACATACATAACTATGTATATG TCTATAGATTAAAAAAAAAAGAGTAACATTACAATTTGAAATGTTATTCT CAGGCATTAAAACTTGGGACAGTAAAGTTCTGGTTACTTCCTACAAAGTG AGATTGTTCACTTTAGAAAAGTCGATCCCTAGCTTTGAGATATTGATTGC TCTACCAGGAATTGTCAATTGTTTGTTAATTCTGCTATAATCTCTCCCGA CCCTAAATTTTTGTATCAGCTGCATATTTTTTCTTGAATGTCACGCTTTA AGTCTTTCCTATTTTTATGTCTTCCTGATGGTTCATGTTTCTAACTACAG GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAA CATGTATGACCCTTACTCCATTTTTCAAGTTGTTCATCACTTAGATTTCA TGTTGTGGCACTATTTACATGCCTTAAATTATGTATGATGGTTTCCCTTT GGTCATTGCAGAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTAA TCTGGATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCATT GAGTGAAAAGAGTGGGTTTTGCGGCACTTTATACCAAGTACGCTGTGAAA CTCTCTAAGAATATGCAGATAACAGAACTTTTCTAATATTCTGATTCTAT TAAGCATGTAAGTTTTGTCAAACAAATGAATGCAACAAATTTGTGACTAT CTGACGTGAAGAACTGTCCTCTATTTGGTTAAAATTGATACGGAAGTTAT TTACAAGTGAAAAATGTGTATGATTATAGTTATTTTAAAAAACTTATATT TTACAAAAAGGAAAAACTCTTTCTTTTTTCTTTTTCTGTGTGAATTGAGT GCAGCATGAAGAAGGCATGTGAAATTGATTATTGAGGGGGAAGAGGATTC GAATGTTAACAAACACGTGGTGGCGGCATAAGAACATAATCTTAATTG
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Coding sequence (CDS) from alignment at Vu08:3699952..3706249-

>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=CDS; length=297bp; location=Sequence derived from: Vu08:3699952..3706249- (Vigna unguiculata
ATGTCAGCTGGGCCTGGACTTGAGTCCCTTGTAGATCAGACAATTTCAGT
CATTACAAATGATGGACGGAATATAGTGGGAGTCCTGAAGGGTTTTGACC
AGGCCACAAATATAATTCTTGATGAGTCCCATGAACGTGTTTATTCTACA
AAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGA
CAACATAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTAATCTGG
ATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001163Sm_dom_euk/arc
IPR034103Lsm8
IPR010920LSM_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005688U6 snRNP
GO:0046540U4/U6 x U5 tri-snRNP complex