Vigun08g038300.1

Transcript Overview


Name	Vigun08g038300.1
Unique Name	Vigun08g038300.1_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	1099

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu08	supercontig	Vu08:3699952..3706249 -	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
pvvuL057	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
asvuL704	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
vrvvuL448	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vstvuL288	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvuL302	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvuL056	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vigan.03G253900.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
LR48_mrnaVigan07g257100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Phvul.001G036000.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
PvulFLAVERTChr01.1000264	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigst.03G159100.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-XM_014647182.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun08g038300	Vigun08g038300_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g038300.1	Vigun08g038300.1_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide
Vigun08g038300.1_Vu_IT97K-499-35_v1.1	Vigun08g038300.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g038300.1.v1.1.CDS.5	Vigun08g038300.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g038300.1.v1.1.CDS.4	Vigun08g038300.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g038300.1.v1.1.CDS.3	Vigun08g038300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g038300.1.v1.1.CDS.2	Vigun08g038300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g038300.1.v1.1.CDS.1	Vigun08g038300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g038300.1.v1.1.three_prime_UTR.1	Vigun08g038300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g038300.1.v1.1.five_prime_UTR.2	Vigun08g038300.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR
Vigun08g038300.1.v1.1.five_prime_UTR.1	Vigun08g038300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

Homology

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.535e-47
Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 1

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
            M+A  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI V+GELDE+LD++LD SKLRAHPLKPV+H
Sbjct:    1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1

Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1

Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1

Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1

Query:   13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_DICDI (Probable U6 snRNA-associated Sm-like protein LSm8 OS=Dictyostelium discoideum OX=44689 GN=lsm8 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.559e-20
Identity = 42/92 (45.65%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   19 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
            LES + + + V+T DGR+I+G L+G DQ  N++L++ HERVYS  EG++ + LG+++I+GD+++V+GE+D++LD  L+L ++ A P+KP++H
Sbjct:    4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSD-EGIEVIPLGVHLIKGDDVAVIGEVDDELDKKLNLKEIIAEPMKPIVH 94

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_SCHPO (U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm8 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.976e-19
Identity = 39/92 (42.39%), Postives = 67/92 (72.83%), Query Frame = 1

Query:   19 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
            L   ++Q + VITNDGR ++G LKGFD  TN+IL +S ER+ S  + ++ + LG+Y++RG+N+++VG ++E+LDS ++ +K+R   +  V+H
Sbjct:    3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1A_ARATH (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.801e-11
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 1

Query:   16 GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
             L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG+N+ ++G
Sbjct:   14 SLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRGENVVLIG 80

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.954e-11
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
            MS+G G E  VD+ + V+  DGR  +G+++ FDQ  NI+L ++ ER+Y   +      LGL+ IRGDN+ ++G
Sbjct:    1 MSSGLGDE--VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIY-VGDCYSDKNLGLFFIRGDNVVILG 70

[Close]

BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1B_ARATH (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.360e-10
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1

Query:    7 AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
            AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++G
Sbjct:    4 AGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIG 80

The following BLAST results are available for this feature:

BLAST of Vigun08g038300.1 vs. DB:Swiss

BLAST of Vigun08g038300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10

Position :

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x 1


Match Name	E-value	Identity	Description
LSM8_ARATH	2.535e-47	85.71	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=37...	[more]
LSM8_PONAB	1.530e-31	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo ...	[more]
LSM8_MOUSE	1.530e-31	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Mus mu...	[more]
LSM8_HUMAN	1.530e-31	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Homo s...	[more]
LSM8_BOVIN	1.530e-31	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Bos ta...	[more]
LSM8_DICDI	2.559e-20	45.65	Probable U6 snRNA-associated Sm-like protein LSm8 ...	[more]
LSM8_SCHPO	8.976e-19	42.39	U6 snRNA-associated Sm-like protein LSm8 OS=Schizo...	[more]
LSM1A_ARATH	4.801e-11	39.71	Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3...	[more]
LSM1_DICDI	4.954e-11	41.10	Probable U6 snRNA-associated Sm-like protein LSm1 ...	[more]
LSM1B_ARATH	6.360e-10	38.46	Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3...	[more]

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..74 e-value: 3.1E-17 score: 73.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 e-value: 8.2E-18 score: 63.9
None	No IPR available	GENE3D	2.30.30.100		coord: 6..97 e-value: 3.0E-26 score: 93.6
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..94 e-value: 1.917E-47 score: 144.591
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 5..81

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu08:3699952..3706249-
coding sequence from alignment at Vu08:3699952..3706249-

mRNA sequence

>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=mRNA; length=1099bp
AGTGGCGGCAAACTCCATTATTATCGTTGTCACTTTCATCCAAATTCCAA
AACCCAGACAAGGCTTAAAGGTATTAGGGTTTTCTTTCTCCATTATTATC
GTTGCCACTGCCAGACTTATTCCTTCATTCCTCTCACACTCTCTTCTCCT
CCTCCTCCACCACCCGCGTTTTGGGAAACCAGAAGAGAGCACCCTCGTTT
CTCCTCCACCCACGTCAAGAAACACGAAGGCAGAGTGCAGGCCATTCACG
GCGTCTCCTTTCTCCTCCACCGTGACATCCACCACGTCGCTGGCAGGGGC
AGCAGCGAGAGAACGCAGCGCCACCATCGGACTGCGATTGACGGACGATT
CCGACCGCCACGACCACCACGAACACAGGGGTGAGATTGTTATCTAGCTA
AAAAGCATGTCAGCTGGGCCTGGACTTGAGTCCCTTGTAGATCAGACAAT
TTCAGTCATTACAAATGATGGACGGAATATAGTGGGAGTCCTGAAGGGTT
TTGACCAGGCCACAAATATAATTCTTGATGAGTCCCATGAACGTGTTTAT
TCTACAAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAG
GGGTGACAACATAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTA
ATCTGGATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCAT
TGAGTGAAAAGAGTGGGTTTTGCGGCACTTTATACCAAGTACGCTGTGAA
ACTCTCTAAGAATATGCAGATAACAGAACTTTTCTAATATTCTGATTCTA
TTAAGCATGTAAGTTTTGTCAAACAAATGAATGCAACAAATTTGTGACTA
TCTGACGTGAAGAACTGTCCTCTATTTGGTTAAAATTGATACGGAAGTTA
TTTACAAGTGAAAAATGTGTATGATTATAGTTATTTTAAAAAACTTATAT
TTTACAAAAAGGAAAAACTCTTTCTTTTTTCTTTTTCTGTGTGAATTGAG
TGCAGCATGAAGAAGGCATGTGAAATTGATTATTGAGGGGGAAGAGGATT
CGAATGTTAACAAACACGTGGTGGCGGCATAAGAACATAATCTTAATTG

protein sequence of Vigun08g038300.1_Vu_IT97K-499-35_v1.1

>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=99bp
MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST
KEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH*

mRNA from alignment at Vu08:3699952..3706249-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=mRNA; length=6298bp; location=Sequence derived from: Vu08:3699952..3706249- (Vigna unguiculata
AGTGGCGGCAAACTCCATTATTATCGTTGTCACTTTCATCCAAATTCCAA
AACCCAGACAAGGCTTAAAGGTATTAGGGTTTTCTTTCTCCATTATTATC
GTTGCCACTGCCAGACTTATTCCTTCATTCCTCTCACACTCTCTTCTCCT
CCTCCTCCACCACCCGCGTTTTGGGAAACCAGAAGAGAGCACCCTCGTTT
CTCCTCCACCCACGTCAAGAAACACGAAGGCAGAGTGCAGGCCATTCACG
GCGTCTCCTTTCTCCTCCACCGTGACATCCACCACGTCGCTGGCAGGGGC
AGCAGCGAGAGAACGCAGCGCCACCATCGGACTGCGATTGACGGACGATT
CCGACCGCCACGACCACCACGAACACAGGTTTGTTTGTAATTTGCGTTCT
GGTTCCCTTTTCTTTCGATTTGTAACCTAAATTTATGATTTTCGTAACCC
TAAAATTGGTTTCCTGTAATTGGAAGTTATGGTGTATGTGTGGTTGTTGT
TGCTGCGATTTGCCCTTGTTTGGATTGGACCCATTCTGTGAATCATAATT
GTTGTGCTGTTGTTGGTTAAATTTTCCCCCAATTTCAATTTCGTAGTTGT
TGCCGTTTTGGTCTGGTGGTGATGTTCATTTCTTTTTTCCTTGTTTTTCT
AGTGTTACTATTTTTTATCTGACTGTGTGATAGGCTGATAGCTGTGGTTG
TTTTCTTTGTTTGTCTGTTTATCTGTAATCATGTTGGAGATATGTGGAGA
ACATGTATTTCATCGTTGCACTGTGATCAAATAAATACTGCCACTGTTTC
ATATTATTCTATCATCTTTGAGACAAAATTATGTTCTTCATTAATGATTG
AATTATATGATAGAAAGTACCAAGTTGCAAAGTTGTATGTGCCGTGTTTG
CAAAGCTGGGATTGAGTTGTTTGGCATTAACTTAAATTGAAATTTGCTTA
TACACTGCAGTATATTTGATGTAGAACTATAATGCCACCTCCTTTTTAAC
TGTCAAGAGTACTCTAATTTGTTTGAGGCATCTCTACCGGGGTTTGATGA
TGGGGAGATTTCAGAAGATGCTCCTGTTGATTTGGATGGTTTAGATGCTT
CTGCAGCACATGTTGCCAAACAAATTATACGACCTCTCATCCATAATTAA
TGCTTCTGTTTTTTTTATGTACTTGCTTGCACTTTGGTTATGCTCCATGC
CTAAAGTACTCTAATTCAGACTTGTTATTGATGTTGCAGCAGTGTCTTGA
TGACTTGCAGTGTCATCTATAAGGATGTTTGATTTAGGAGCCAGTTGGTG
CCACCACTTTATGCACCATAACATTTACCTTTTAGGGTTTTTTCAATGAG
ATAAACTTAGACCCAATAATTACAAGGTATATGGAACAGCTAATGTGTAT
ATCAACAAAAAGGAGATATCCTGTGATCATTGTCCATGGAGGATGTGTTT
ATAGGGTAGGGGAGAAGTAGCAAAGGGAAGAATGGAAATTGGCTAGGCAT
TTGCACTGGGGACAGAGTTGGCATCTTGCAACTATAGTTGCTGTCTTCTT
GCCTGCTTGCCATTTTCTGTCTTCCTGGTTTCTTTTTCTAAGCTGGAATT
ATATTGCTGCTGTAAAAAAGTTCTCTTAGAATATCATCTATTTATTTTCA
TATACTACCAGTTTCCATTAGGTTTTGTTAGGTCATATCATTTAAGATTT
TTTTGTTTATTTTTAAGAATCAAAAAAAAGATGTTTGAGGACCGTGAATC
CTAGTAATGTGTCACAAAGGAATCGAGGTGTGCTTAACGTGAGATATATG
ATTTTATCTTCCTGCTCAATGCTTTTCCTTTTGTAACAACCAAGGTGCTC
AGAAAAAAAAAAGCCACTTGTATCAGAACGGTTGATGATCTAGTCCTCCA
GTTGTGCCTTACTAAATTGGATTTTCTATATCTATGGGAATTTTTAATAC
ATATATTTGGTATGACACTTGTGAAACATGCATAAAGCCTGCCCCAATTG
AAACTTGGTAGCTCGGGTTGTATCTTCTCTAGAATCTCACTCCCACAGGC
TTGGTGGGAGATTTAGCAAATGAGAGTAGTTTTATGTAATTCGGAATGGA
AATACGAGAATGGGCCCAGCGATCTCTTTGCTAACATGTTCACATCAACA
ATTCAAGCCTTATCATATTTATAGTACACACAAATACATAAAACTATGGT
AAGATACACTTTACTGTCATTGATAAAATAGTAAGGAACTCCAAGAGATG
CTTTCTTTCAATAGGAATCAATCTTTAATTTATTATACTCCATTATAAAA
AAAATTACAGATTTTAACAAGTTCATGCTAGTATTACTATTATTTTAGCT
GGGAACAACTTAAGAATTTGTTTTTTTGACTAATGCGGGTGGCGGGGCTT
GCTTGGTTGCTCACGTTCAGTGCATGTAGCTTCTCCTCGTTGTTCCATCT
TCTTGGTTCCATAATTTCATGTCCAATTGGCTGTGCTATGGTATCTTGAA
TCAAACAAATCCAACATATTAGAAGTAAACAACAGTTTTATGTTTGATGC
CTCTGCAATTCTCGCTCAGTCTGGGAAAACTAAACCAATTAGACACTTTA
TCAACTCTTGCTCTATTGTTGCATAGAAATCATTCAAATAAACCATCATC
TTCTCCATTCAGTTGAATCCCTGACCTGCCCTTTTAGGCCTTTATTTGAT
GGCCATTGTGGTTGTGGTTCTGACTTTTCTGCCAATATCGGTTGACTTTG
ACATCTAGTACAAAAGCCTCAACTTTTTTAACTGTTGTTTTAAGGTGATT
CACAATCCCTCTGGAATGACTGAAATGTAGAACTGGAGGGAAAAATGTGG
TTGTTTTGCCCTTAGGATGGTAGTTGTCCACTGCTGTTTATCACAATTTA
TGCTTGGAATTGGGAACTTATTCATGCAAATATGTTTTATTGACCAAATA
CATTTTTCTTGGTGCTAAATCATTGTCAACTTGATTTTGATCTGAGATTG
ATAAACACAGTAGGATATGTTGCATAATATATAATGTATGATTAAATTTT
TTTCCATAATTATGCATAGTAAAATTGTTAGTAATCTTTCATGAACATTT
TCCGTCGTTATTTTTTTATGCAACCTGGATGTCATAACCACTAGTAATTT
GGTGTTAACATGTAAATTCTGCTGTTGAAGTTAACACTTGATTTTGGTTC
GGGAGTTGTGGCATCATATTTCTCCACTACCCTGATTTTAGCTGGTTCTG
AATTTTCATTTGCATTGCTTTAGTTGATGTTTTGGCATTGAAACTTGTAC
AGGGGTGAGATTGTTATCTAGCTAAAAAGCATGTCAGCTGGGCCTGGACT
TGAGTCCCTTGTAGATCGTAAGCCATCTATAAATATTTATGTTTTGCTAT
GATGTTTTATATTCTATACATAGCTATGTTATTTACTGTGCTTATCAATG
ACAATTATTTTAGTTAATTAAGCATTGGTAATTGCTATCCCTTACTGAAT
CTTTGGGTTGTTGACAGAGACAATTTCAGTCATTACAAATGATGGACGGA
ATATAGTGGTAAGCTTTTGTATATGAACAAAATTCAGCTTTTTTGTCAGT
TTGTTGTGTTTTAATAAGTGTCATTGCTCAAACTTCTAATTTCTCTGTTT
TTTTGTTCAGGGAGTCCTGAAGGGTTTTGACCAGGCCACAAATATAATTC
TTGATGAGTCCCATGAACGTGTTTATTCTACAAAGGTATGCTGAAACTAT
GCAGTTGTAGAAACATTCCTTCAAAGATTAATGAGCCATAACTTTAGTGA
ACTTTGATATGTAGCTTCAAAAGTTAGTTCCTTAAAATTGGACATTCTCA
CTAGTGAGGGTAAAGTAAGCCTATTTTTGCCATTCAATGTTTTAAGACTT
AGATTGACCCTTTCCGTTATTATGAAACACATAAACCTTATCCCTCTTGC
CCACTTGTTCTCTCTATTAGATGACAAGGGAGGCTATGCAGTATTAGATT
CTGCATTAGGCAAAGGGAGGCTATGCAGTACTAGATCCATGTCCACCACG
CCAAATGTTAGATATACTTGAGAGTGAGGCATTTTTCCATGACTAAGAAA
GACCTTGCAAAACTGGTTTGGTAATTCCAACATTGGCAACAACCACAATA
TTTTTATCTTACTAGGAGAGGTCTGTTACATGAATTACACTACACCATTG
CCTTTGGTGAAAAACCAAATTCTGAAGGATACTATTCATCATGAGACTCC
TTTGAGTAATTTCCTTCTATGTCTCCCTTTACTCATTTTCACAAAACTGA
ATCATATGATATGCTCTCTTCATCCGTCTCTAATAGCCTTTGAAAATGTC
TGTTGGTATGGCATCTATGATTTACCAAATATTTTTCCTCTGTTCCTTGT
AATTGCACTATATATAATCACTTTTACACTTAATGAAAATCCCTTTGGTT
CTATAATTCTCACTCCCAAAATTTAACTACTTTTTCATGATTCAACTTGT
TAATTTTCGTCCATTTTTGGTTGAAGAAAATTTACTTTCTTTGCATTTAA
TCAATGTTCCCCCTGATATTTTTGTCTGTTTCATAGATATTTGTCTCTTA
TATGTTGTTTGTGAGCACTGGAATTTTCCCCTTCAATTTGAGGACAAGAA
CTTCCTAAAATAAAGATAAAATGCTGGAATACTTCTCCGCCTTTTTTGCA
TTCATTTCAGTGTTTTTATAGGAAGAGAATTCCTATCCATCTATTGGCCT
TCTGCAGCAAGGAAGGGAATGACAGAATTAGTAATAATGGAATGAAAATG
GAAGCTTGTTAAGAAATCTTAAATAACAAACTCAGAAAATAAATTTAATA
TTCTAGGAATTTAGTCTCTGAAATGCACATGTTTGGAGACATTTCTCTTG
AGCCTGATGACTATTGACCCAATGAAGCTTTGGACCTTCCTTAGCATTTC
CTGAATTCCTGAATTCTTCTCCATGTTGGGCTCCCCATCATATTATTGCT
ACTTCTATCTTGAAAATTATCTCTCAATATAGGCCTCTGCCCCGACAATG
ATTGTTGCATTTTTTTCTTCTATTTTTTGTTGTGCTCTTCTCTATTTTAT
GTATATGCTGCATCTATCTTTTTCTCCATATCTGGATCCTTGAGTACAAG
TGATTTTGTGTGTAAGGGAAGTAGAATGCAAGGTGAAGAAAAATGAAATG
GAAGAGGGATTGTTAGCTTAATGATGAGACTAAAAAAACTAAAGCCTTCT
GTTTTTGGGGGTTCACAAAGTCTAATAATGCGTGCTTGTCTCCGGAAGCC
CCATTGTGTCTTTCCTAATATACATGCATACATACATAACTATGTATATG
TCTATAGATTAAAAAAAAAAGAGTAACATTACAATTTGAAATGTTATTCT
CAGGCATTAAAACTTGGGACAGTAAAGTTCTGGTTACTTCCTACAAAGTG
AGATTGTTCACTTTAGAAAAGTCGATCCCTAGCTTTGAGATATTGATTGC
TCTACCAGGAATTGTCAATTGTTTGTTAATTCTGCTATAATCTCTCCCGA
CCCTAAATTTTTGTATCAGCTGCATATTTTTTCTTGAATGTCACGCTTTA
AGTCTTTCCTATTTTTATGTCTTCCTGATGGTTCATGTTTCTAACTACAG
GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAA
CATGTATGACCCTTACTCCATTTTTCAAGTTGTTCATCACTTAGATTTCA
TGTTGTGGCACTATTTACATGCCTTAAATTATGTATGATGGTTTCCCTTT
GGTCATTGCAGAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTAA
TCTGGATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCATT
GAGTGAAAAGAGTGGGTTTTGCGGCACTTTATACCAAGTACGCTGTGAAA
CTCTCTAAGAATATGCAGATAACAGAACTTTTCTAATATTCTGATTCTAT
TAAGCATGTAAGTTTTGTCAAACAAATGAATGCAACAAATTTGTGACTAT
CTGACGTGAAGAACTGTCCTCTATTTGGTTAAAATTGATACGGAAGTTAT
TTACAAGTGAAAAATGTGTATGATTATAGTTATTTTAAAAAACTTATATT
TTACAAAAAGGAAAAACTCTTTCTTTTTTCTTTTTCTGTGTGAATTGAGT
GCAGCATGAAGAAGGCATGTGAAATTGATTATTGAGGGGGAAGAGGATTC
GAATGTTAACAAACACGTGGTGGCGGCATAAGAACATAATCTTAATTG

Coding sequence (CDS) from alignment at Vu08:3699952..3706249-

>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=CDS; length=297bp; location=Sequence derived from: Vu08:3699952..3706249- (Vigna unguiculata
ATGTCAGCTGGGCCTGGACTTGAGTCCCTTGTAGATCAGACAATTTCAGT
CATTACAAATGATGGACGGAATATAGTGGGAGTCCTGAAGGGTTTTGACC
AGGCCACAAATATAATTCTTGATGAGTCCCATGAACGTGTTTATTCTACA
AAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGA
CAACATAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTAATCTGG
ATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCATTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR034103	Lsm8
IPR010920	LSM_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005688	U6 snRNP
GO:0046540	U4/U6 x U5 tri-snRNP complex

Search form

Vigun08g038300.1