Vigun08g038300.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.535e-47 Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 1 Query: 1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
M+A GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI V+GELDE+LD++LD SKLRAHPLKPV+H
Sbjct: 1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31 Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1 Query: 13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
LE+ +++T++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL +RA PL V H
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31 Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1 Query: 13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
LE+ +++T++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL +RA PL V H
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31 Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1 Query: 13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
LE+ +++T++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL +RA PL V H
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.530e-31 Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1 Query: 13 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
LE+ +++T++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS LDL +RA PL V H
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_DICDI (Probable U6 snRNA-associated Sm-like protein LSm8 OS=Dictyostelium discoideum OX=44689 GN=lsm8 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.559e-20 Identity = 42/92 (45.65%), Postives = 73/92 (79.35%), Query Frame = 1 Query: 19 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
LES + + + V+T DGR+I+G L+G DQ N++L++ HERVYS EG++ + LG+++I+GD+++V+GE+D++LD L+L ++ A P+KP++H
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSD-EGIEVIPLGVHLIKGDDVAVIGEVDDELDKKLNLKEIIAEPMKPIVH 94
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM8_SCHPO (U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm8 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.976e-19 Identity = 39/92 (42.39%), Postives = 67/92 (72.83%), Query Frame = 1 Query: 19 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGXXXXXXXXXXXXXKLRAHPLKPVIH 294
L ++Q + VITNDGR ++G LKGFD TN+IL +S ER+ S + ++ + LG+Y++RG+N+++VG ++E+LDS ++ +K+R + V+H
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1A_ARATH (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.801e-11 Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 1 Query: 16 GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
L + +D+ + V+ DGR ++G+L+ FDQ N +L+E++ERV + + LGLYIIRG+N+ ++G
Sbjct: 14 SLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRGENVVLIG 80
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.954e-11 Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
MS+G G E VD+ + V+ DGR +G+++ FDQ NI+L ++ ER+Y + LGL+ IRGDN+ ++G
Sbjct: 1 MSSGLGDE--VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIY-VGDCYSDKNLGLFFIRGDNVVILG 70
BLAST of Vigun08g038300.1 vs. DB:Swiss
Match: LSM1B_ARATH (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 6.360e-10 Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 7 AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVG 219
AGP L S +D+ + V+ DGR ++G L+ FDQ N +L+ + ERV E + LGLY+IRG+N+ ++G
Sbjct: 4 AGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIG 80 The following BLAST results are available for this feature:
BLAST of Vigun08g038300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=mRNA; length=1099bpback to top protein sequence of Vigun08g038300.1_Vu_IT97K-499-35_v1.1 >Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=99bpback to top mRNA from alignment at Vu08:3699952..3706249- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=mRNA; length=6298bp; location=Sequence derived from: Vu08:3699952..3706249- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:3699952..3706249- >Vigun08g038300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g038300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g038300.1; organism=Vigna unguiculata; type=CDS; length=297bp; location=Sequence derived from: Vu08:3699952..3706249- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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