Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun08g212000.1 Vigun08g212000.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun08g212000.1_Vu_IT97K-499-35_v1.1 Vigun08g212000.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g212000.1.v1.1.five_prime_UTR.1 Vigun08g212000.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g212000.1.v1.1.CDS.1 Vigun08g212000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g212000.1.v1.1.CDS.2 Vigun08g212000.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g212000.1.v1.1.three_prime_UTR.1 Vigun08g212000.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun08g212000.1 vs. DB:Swiss
Match:
TM245_HUMAN (Transmembrane protein 245 OS=Homo sapiens OX=9606 GN=TMEM245 PE=1 SV=3)
HSP 1 Score: 76.6406 bits (187), Expect = 4.115e-13
Identity = 56/206 (27.18%), Postives = 109/206 (52.91%), Query Frame = 1
Query: 1279 SGAAEVFNFVSQTMVFFWVLYYLITS--ESGGVTEQMMHMVPISNSAKIRCV--EVLDKAISGVLLATPEISFFQGCLTWLLFRLYRIHFLYVSTVFAFISPFIPILPSWLSTIPATIQLVL-EGRYIVAIFLSVTHLFLLDYGATEILEDVP-GQSAYLTGMSIIGGIALFPSAIEGAIMGPLITTVMIALKDLYAEFVLGERDD 1878
SG A + NFV ++F L+YL++S E + ++ + P+S + + +++AI GV A+ +++ F G TWL ++ I+ +++ + A I +P L ++ + +PA + L L +G AI L + HL + T I D+ G YLTG+++ GG +EGAI+GP++ +++ ++Y+ ++ +
Sbjct: 648 SGTA-LLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNS 850
BLAST of Vigun08g212000.1 vs. DB:Swiss
Match:
TM245_MOUSE (Transmembrane protein 245 OS=Mus musculus OX=10090 GN=Tmem245 PE=1 SV=1)
HSP 1 Score: 76.2554 bits (186), Expect = 4.924e-13
Identity = 57/206 (27.67%), Postives = 109/206 (52.91%), Query Frame = 1
Query: 1279 SGAAEVFNFVSQTMVFFWVLYYLITS--ESGGVTEQMMHMVPISNSAKIRCV--EVLDKAISGVLLATPEISFFQGCLTWLLFRLYRIHFLYVSTVFAFISPFIPILPSWLSTIPATIQLVL-EGRYIVAIFLSVTHLFLLDYGATEILEDVP-GQSAYLTGMSIIGGIALFPSAIEGAIMGPLITTVMIALKDLYAEFVLGERDD 1878
SG A + NFV ++F L+YL++S E + ++ + P+S + + +++AI GV A+ +++ F G TWL ++ I+ +++ + A I +P L ++ + +PA + L L +G AI L V HL + T I D+ G YLTG+++ GG +EGAI+GP++ +++ ++Y+ ++ +
Sbjct: 645 SGTA-LLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNS 847
BLAST of Vigun08g212000.1 vs. DB:Swiss
Match:
TM245_RAT (Transmembrane protein 245 OS=Rattus norvegicus OX=10116 GN=Tmem245 PE=1 SV=1)
HSP 1 Score: 75.485 bits (184), Expect = 9.401e-13
Identity = 56/206 (27.18%), Postives = 109/206 (52.91%), Query Frame = 1
Query: 1279 SGAAEVFNFVSQTMVFFWVLYYLITS--ESGGVTEQMMHMVPISNSAKIRCV--EVLDKAISGVLLATPEISFFQGCLTWLLFRLYRIHFLYVSTVFAFISPFIPILPSWLSTIPATIQLVL-EGRYIVAIFLSVTHLFLLDYGATEILEDVP-GQSAYLTGMSIIGGIALFPSAIEGAIMGPLITTVMIALKDLYAEFVLGERDD 1878
SG A + NFV ++F L+YL++S E + ++ + P+S + + +++AI GV A+ +++ F G TWL ++ I+ +++ + A I +P L ++ + +PA + L L +G A+ L V HL + T I D+ G YLTG+++ GG +EGAI+GP++ +++ ++Y+ ++ +
Sbjct: 645 SGTA-LLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTVFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAVLLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNS 847
BLAST of Vigun08g212000.1 vs. DB:Swiss
Match:
TM245_BOVIN (Transmembrane protein 245 OS=Bos taurus OX=9913 GN=TMEM245 PE=3 SV=1)
HSP 1 Score: 72.7886 bits (177), Expect = 6.619e-12
Identity = 62/231 (26.84%), Postives = 118/231 (51.08%), Query Frame = 1
Query: 1228 VLGSGAKFVFSILNSIV-----SGAAEVFNFVSQTMVFFWVLYYLITS--ESGGVTEQMMHMVPISN---SAKI--RCVEVLDKAISGVLLATPEISFFQGCLTWLLFRLYRIHFLYVSTVFAFISPFIPILPSWLSTIPATIQLVL-EGRYIVAIFLSVTHLFLLDYGATEILEDVP-GQSAYLTGMSIIGGIALFPSAIEGAIMGPLITTVMIALKDLYAEFVLGERDD 1878
V+ +FS + +++ SG A + NFV ++F L+YL++S E + ++ + P+S S+ I + VE + GV A+ +++ F G TWL ++ I+ +++ + A I +P L ++ + +PA + L L +G AI L V HL + T I D+ G YLTG+++ GG +EGAI+GP++ +++ ++Y+ ++ +
Sbjct: 626 VMSRNVSLLFSTITTLLTILFYSGTA-LLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRHSRGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNS 853
The following BLAST results are available for this feature:
BLAST of Vigun08g212000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot )
Total hits: 4
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 4.12e-13 / Id = 27.18 Expect = 4.92e-13 / Id = 27.67 Expect = 9.40e-13 / Id = 27.18 Expect = 6.62e-12 / Id = 26.84 Sequence TM245_HUMAN TM245_MOUSE TM245_RAT TM245_BOVIN
Match Name E-value Identity Description
TM245_HUMAN 4.115e-13 27.18 Transmembrane protein 245 OS=Homo sapiens OX=9606 ... [more] TM245_MOUSE 4.924e-13 27.67 Transmembrane protein 245 OS=Mus musculus OX=10090... [more] TM245_RAT 9.401e-13 27.18 Transmembrane protein 245 OS=Rattus norvegicus OX=... [more] TM245_BOVIN 6.619e-12 26.84 Transmembrane protein 245 OS=Bos taurus OX=9913 GN... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun08g212000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g212000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g212000.1; organism=Vigna unguiculata; type=mRNA; length=2545bp back to top protein sequence of Vigun08g212000.1_Vu_IT97K-499-35_v1.1
>Vigun08g212000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g212000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g212000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=634bp back to top mRNA from alignment at Vu08:37346619..37349568+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g212000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g212000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g212000.1; organism=Vigna unguiculata; type=mRNA; length=2950bp; location=Sequence derived from: Vu08:37346619..37349568+ (Vigna unguiculataGACTTGTGGAAAAGGAGAACAACACAACACAAGACACACTCACATGAAGC
CAAGTACCAATTCCTTTTTGCATACTTTTCACTTCACTCTGCTTCCTTTG
TCAGTTGAAAAAGCTGCAGTCTTTACTATTTTTACAACAAAAACCATGTA
TCTATGTTTATTTTCTTAGCCATTAAAACCTGACACGACACATATTTATT
CTTTCGTTCATTAATTTTCACAAATCTATTGATTTGCATTGGTGTTTTTG
TTCTGTCGCACTCTCTTG ATGGACCTTGTGCCTTATTCTGATCCTAACTC
AACCACGGCCACCCCGCCGTGGTACGACATGTTCCGATCCGCTTCCCTTC
GAAAGCCCTCCTCGGATCCTGCGCCGCCGCCGCCGCCGAATGCGGACCAA
AAAGTCAACCCCTCCGGCGACTCTCAGGCGCGGCTCGCCCTTTACATAGC
CATGGCCCACGCCGGCCTCGTCTTCGCCATTCTCATCCTCTTCTCTCTCT
ACAAACTCCTGCAACAGTACCTCAAACCCCTTCAATGGGCCATCCTATGT
TCCATCCCTCTCAGACTCATTCACCAAGCCATCGTTTCCTTTTGGTCTCA
CCCTCTCAAACTGGGGCTCCTCCACACTCTCCTCGCCCTTCCACTCACCG
TTTTCTCGCTCTTCGTTACCAGCCTCGCCGAGATTCGGCAAACTCTTCTC
ACAATCCTTCTCCGGAAACCAAAGCCTCCGAATGAGGAGGACTCAAAGAA
GCTTAGTGCGTTTTCCACTTTGCTTCGTCTGCTCTTGTCTTTTGGGGTCT
TTGTTTTTGCTTATGAGAGGCTTGGCGCTGTTGGGTCGTTGTCACTTCTC
GGATTAGGCTTCGTTTTCAGTTCCAAGAATGTGGCTTTCAGTTTCTCTCC
CTTTGGTGCGTATTTCACCAGAGGGATATTGAAGAAGTTGAAAACCGTTG
TGGCTGTTGGGTTGATTGTCGGGATGATTGTCGGGTTCTTGACTGGGGTG
ATTTTCTTCTCTTATCAGATTGGAGGTGAAGGGAAGGAGGCAATGATTTC
GCTGAAATTGCGAATGGAAGAGAACAACTATGCTGAGAGACTCGGTGTGA
AGAAGTGGATTGAGGACAATGATATTGCTGGAATGGTGGATAAGTACACT
GGTCAGTTTTATGAGACGGTTTCTGATCAGATTGATGGGTTGGCAGCGCA
GTACAATATGACTGAATTTGTGACGGTTGTTAAGCAGTTTGTGATAACTG
ATCCTGCCATTGCTAACTCTTCTCAGGTTCCAGCGGATTCATTAATGGTG
GTTTCACCGCTCGCGGAAAGGATCTTGAATTTGAAGGGTATGATTAGGAA
TAGGGAGTGGGGGGGAATTTATGCAGAAGTTAATGCCCTTTTGCGAGAAC
TTATAATCACTAGGGAAGATTTGTTTGAGAGGGCAAAAGGGTATGCAGTT
AAAGGGATGGATGTTGGTCAACGTCTTTTGGCTAGTGGTACAAGTGTGCT
TGGAAGCGGTGCAAAGTTTGTGTTTTCCATTTTGAACTCCATAGTTTCTG
GTGCTGCTGAGGTTTTCAATTTTGTGTCTCAAACGATGGTTTTTTTCTGG
GTTTTGTATTACCTCATAACATCAGAGTCGGGTGGGGTAACAGAACAAAT
GATGCACATGGTTCCAATTTCAAACTCGGCTAAGATAAGGTGCGTTGAAG
TGTTGGATAAGGCAATTTCAGGAGTCCTTTTGGCCACTCCTGAGATTTCA
TTCTTCCAAGGATGCCTCACTTGGCTTTTGTTTAGGCTATACAGAATACA
TTTCTTGTATGTGTCAACTGTGTTTGCCTTTATTAGCCCTTTCATTCCGA
TATTACCGTCTTGGCTTTCAACAATTCCAGCAACAATACAGCTAGTGCTA
GAAGGAAGATACATAGTGGCCATTTTCTTGTCTGTTACTCACCTTTTTCT
CTTGGATTATGGGGCAACTGAGATTCTGGAAGATGTACCCGGGCAAAGTG
CATATCTTACTGGAATGAGCATCATTGGGGGAATTGCCTTGTTTCCATCT
GCTATAGAG GTAAATGTTCACCCTCCATCGTTTGATGTTCTGATCTCTTT
CTGTACATTATAGTTTCTCTGCATTGTTCTTGTAATCAATCAGAAATCAT
AATAAATACTTCTGTTAAGATAGTGATGATGATAAAAGTGGATAATTATC
ATAAATGGTAATGACAATTGTGGTAGAATGACAGTATATAAACACTTTTC
TCTATAGTTCATACACTAAATACAATTTGAACTAATAGTCTCACATGCAT
TGTCATTGTTCCGATTAAGTGATTACATGAAGTTCTAACCTATGCTTGTT
CTAAAATTTAGACTGGTTTACCTGCATACCTTGATTTGATGTTGTAGTAT
CTAGTGTCTGCTTCTACTTCTATTGCATTCCATGGCATTGCTGAAGGAAT
TTGTTGGTCTGCAGGGGGCTATTATGGGGCCATTAATAACTACAGTCATG
ATTGCTCTGAAGGATTTATATGCTGAATTTGTCTTGGGGGAGCGTGATGA
TAAGGTGAAGCAGAAGGAAAATTAG GCATATACTTGTGTCTGTGACTGTA
TATATATTTGCAGTTCAACATGGCTGCTAGTACATTGTTTGTTGTTTTAT
GCCATTCTAGCAGTGGAGCTTGTGTCTAAGCTCGTCATTTGTTTGTAATT
ATTCTTTTATCTATATCATTTCATTATTGTAATTGACCAGATAGGACTTT
GTTTTCCTCTCTTTTTTCCTCCATTTAGGGGTCATAATGATTTTCACTTG
GTGACAGTGCTCGATGGTTGTAATATTCCTGTGTTGTATCTCTGAAAGAA
TTTTTCAGATTCTTTGTACCAAGGAGAAATGTGAAATAAAGAAGAAAAAA
AATCACAGAAGTTTCTTCTGTACAAAATTTTCTGCAATTTTCTTTTGATT
back to top Coding sequence (CDS) from alignment at Vu08:37346619..37349568+
>Vigun08g212000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g212000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g212000.1; organism=Vigna unguiculata; type=CDS; length=1902bp; location=Sequence derived from: Vu08:37346619..37349568+ (Vigna unguiculata back to top
