Vigun09g169400.1

Transcript Overview
NameVigun09g169400.1
Unique NameVigun09g169400.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length2359
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:33826889..33829247 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL368Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuL802Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuL0322Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0369Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1209Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL537Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR640Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR675Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL101Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL093Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL314Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL291Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL400Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL461Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL409Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL831Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR455Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL404Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carvuL411Cicer arietinum
ccavuL336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL438Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR763Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL296Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL311Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL624Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL708Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR512Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_12682Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g169400Vigun09g169400_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g169400.1Vigun09g169400.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g169400.1_Vu_IT97K-499-35_v1.1Vigun09g169400.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g169400.1.v1.1.five_prime_UTR.1Vigun09g169400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g169400.1.v1.1.CDS.1Vigun09g169400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g169400.1.v1.1.three_prime_UTR.1Vigun09g169400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.140e-25
Identity = 79/190 (41.58%), Postives = 96/190 (50.53%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPECYNCGRIGHFARDCYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCYNCGEEGHFARECPNVGKLNE 585
            RSTG V WFNA KG+GFITP DGS +LFVH +SI S+GYRSLT G +VEF +  G DG+  AV+VT+                       G             G   GGGG  CYNCG +GH ++DC                        GGGGGGG     GG  CYNCG+ GHFAR+C + G  ++
Sbjct:   10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP----------------------GGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGI----------------------GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQ 155
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.704e-24
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 MAET--RRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVT 213
            MAE   +R+ GTVKWF+ QKGFGFITP DG EDLFVH + IRS+G+RSL EG++VEF ++ G DGR  AVDVT
Sbjct:    1 MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGRTKAVDVT 73
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SHIFL (Cold shock protein CspA OS=Shigella flexneri OX=623 GN=cspA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SALTY (Cold shock protein CspA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=cspA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SALTI (Cold shock protein CspA OS=Salmonella typhi OX=90370 GN=cspA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SALEN (Cold shock protein CspA OS=Salmonella enteritidis OX=149539 GN=cspA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_KLEAK (Major cold shock protein OS=Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006) OX=1028307 GN=cspA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_ECOLI (Cold shock protein CspA OS=Escherichia coli (strain K12) OX=83333 GN=cspA PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_ECOL6 (Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=cspA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
[Close]
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_ECO57 (Cold shock protein CspA OS=Escherichia coli O157:H7 OX=83334 GN=cspA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
            + TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G  G A A +VTS
Sbjct:    4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
The following BLAST results are available for this feature:
BLAST of Vigun09g169400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
CSP1_ARATH1.140e-2541.58Cold shock protein 1 OS=Arabidopsis thaliana OX=37... [more]
GRP2_NICSY2.704e-2465.75Glycine-rich protein 2 OS=Nicotiana sylvestris OX=... [more]
CSPA_SHIFL5.848e-2262.69Cold shock protein CspA OS=Shigella flexneri OX=62... [more]
CSPA_SALTY5.848e-2262.69Cold shock protein CspA OS=Salmonella typhimurium ... [more]
CSPA_SALTI5.848e-2262.69Cold shock protein CspA OS=Salmonella typhi OX=903... [more]
CSPA_SALEN5.848e-2262.69Cold shock protein CspA OS=Salmonella enteritidis ... [more]
CSPA_KLEAK5.848e-2262.69Major cold shock protein OS=Klebsiella aerogenes (... [more]
CSPA_ECOLI5.848e-2262.69Cold shock protein CspA OS=Escherichia coli (strai... [more]
CSPA_ECOL65.848e-2262.69Cold shock protein CspA OS=Escherichia coli O6:H1 ... [more]
CSPA_ECO575.848e-2262.69Cold shock protein CspA OS=Escherichia coli O157:H... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 45..63
score: 43.23
coord: 9..24
score: 73.17
coord: 30..39
score: 60.9
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 8..71
e-value: 4.3E-25
score: 87.4
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 8..71
e-value: 8.56936E-27
score: 94.9529
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 119..135
e-value: 9.4E-5
score: 31.8
coord: 173..189
e-value: 3.0E-7
score: 40.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 173..189
e-value: 1.9E-9
score: 37.2
coord: 119..133
e-value: 2.1E-7
score: 30.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 174..189
score: 11.713
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 120..133
score: 10.955
IPR011129Cold shock domainSMARTSM00357csp_8coord: 8..73
e-value: 4.9E-21
score: 85.9
NoneNo IPR availableGENE3D2.40.50.140coord: 1..71
e-value: 2.3E-26
score: 93.5
NoneNo IPR availableGENE3D4.10.60.10coord: 106..147
e-value: 3.9E-6
score: 28.6
NoneNo IPR availableGENE3D4.10.60.10coord: 170..194
e-value: 5.4E-9
score: 37.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..168
NoneNo IPR availablePROSITEPS51857CSD_2coord: 6..72
score: 33.21
IPR019844Cold-shock (CSD) domainPROSITEPS00352CSD_1coord: 20..39
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 104..138
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 155..192
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 5..71

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1; organism=Vigna unguiculata; type=mRNA; length=2359bp
GAATAATGTGTTCGGATAAAGCATGGGAAGTGGATGGCGAGCATAACAGA
GAGAGTGAAATTATAGCAAGTAGGATGAGGATGGGTCCCACATAACTATA
TTAATATATCGTTTTTATTTTCATTCCACTGACACAAAATCCATACATAC
AATACCACATCAGCGCCTCCGTGGGAATGGACGAATCACAATCGCCGCGC
ATCGCTCTTCCCTCCAATTCAGCGTCCTAAGCTTTCCCAAACCCCGAAAG
GGAAACTTCTAGGTTCTTCTAGAACCTTCTATTCCGTTCCAACTCTTCAG
GACCCATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAAC
GCGCAGAAGGGTTTCGGATTCATAACTCCCCAAGACGGCTCCGAAGATCT
CTTCGTTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCG
AGGGCCAGTCTGTCGAGTTCCTCCTCGATTACGGCGACGACGGCCGTGCC
ATGGCCGTCGACGTCACCTCTGCTGTTAGATCTCGCCGTCCAGGCAGTTT
TCGCGGCGGGAGCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAAGCC
GTGGTGGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGTGGA
GGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTCGCTAGGGA
TTGCTACCAGGGACAGggtggtggtggtggtggtggtggtgcaggtggtg
atggtAGGATACggagacgcggtggaggaggaggcggcgggggtggtggt
ggtggtggtggcggaggaggagTGTGTTATAACTGTGGAGAGGAAGGGCA
TTTTGCAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGAGAATGTG
GGGTTTATGAATTATGATTTCTTCTATTGTAGTGTGAGTCTGCTATTATT
GGTTGCATGGGTCTGTTATTATTGGTTTCTAGCCATTGGCATTTGTTCCA
AATATGTTTTGCAGGTTTTGCTAATTGTTTCATCTAATGCGGTTCTTTTG
ATGAAGTGATTATGGTTGTTCCTCCTCTTGAATTTGAAGCAAGGAAAGCC
ATAATAACTAATGGCTAATTTAATCAATTTATTTATTCAGCAAATATTGC
ATTCGTTTTTGTGCTCTGTCCTCAAACTATCTGTATTCTGATCACTTCCG
ATGCAAATTTCAGCTTCTCACTTATGTGCTTTTATATGTCTGTATTTTCA
AGTGGTGTGCAACAATTCTACACTATGAATCTATGAAAACTCGTGTTAAT
ATTTTTTTAATGTTGTAAAAGCAAATAAAATAATTATAACTAATAATTTT
TTGCATATTGAGCTGGTGCTCTTTAATTATTTTGTAAGTGTATCTATATG
CTTTTAATGCTTTAATTAATGGTTTATTTCTTTAGATTTCTTGCGGATTA
TTTTTCCCTAGATATGCATATTAAAGAAGGATATACAAAAGTTGGTAGAA
AGAAGTTCAATTTTCATCTGTAATTCATGCAAATATTGTGAGGCAAGATC
ACTGCTCTGATAAGAAGCGGGCATTTACGAAGTGGTCCTACCTTCAAAGA
TATGATATGATAAGTAGTCTATTCTGTCCTCTAGTTTTGTGTGTGGATAA
TATGTTGTCACTTCTGATCTTTATTCATGAACATAATAAATGTTGTGGAT
GTTTTTATTTTTAATTTGTTCATTTAAGGCATTGTTTTATTCTTTTTAAA
GGTTTTACTGGCAGAGGTTTTCTAAACTTTAATACTGTGAAAAGTTGTGA
ATAAATGCAGTCTTCCATATCCATTTTGGTTAAAAAAATAGTTGCCACAA
CTAGAACTTTAATGTTGCAGTGACAGCTTGGGTTCTGATGTAGAACCACA
CTCATGCCTTTACATTTTTTTATTAGAAGTATTATACTACATCACATTTG
TAATAAGTATATTTAATTGTCAGATCCGAGACTAATTATGATGACAGATA
TGCTTAATCCGTGTGGTGTGATTAGAAAAAAAAAAAAAGAAGTTAACCTA
GTTTCACTCGAAGTTGATATGTTGTCCTATGTCATGCATTCTGATGGTTG
CATGAGAGCATCGTGGGTTGCTTCCGCCCCTTGGTTCTTTTTTTTTATAA
TTGCTAGAAAAATCTTTGCATTTTCCTCTCTTTTTTATTTTCAACCTAAA
AATATATATGCTAACTCTTGTTTCTTCTGAAATGTATCTTTAGATGTTTA
ATGCTTATGATAATAGGTAGGTGTCATCAGGATAATTTTGAGTGGCTTGT
GAATATCCATAGTAATCGAAATCCTGGTTTTTCTTTTTCTTCTGTCCATC
ACTTTGAAC
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protein sequence of Vigun09g169400.1_Vu_IT97K-499-35_v1.1

>Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=196bp
MAETRRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEG
QSVEFLLDYGDDGRAMAVDVTSAVRSRRPGSFRGGSGRGRGRYGGGESRG
GGIGRRGAGGYGGGGGGPECYNCGRIGHFARDCYQGQGGGGGGGGAGGDG
RIRRRGGGGGGGGGGGGGGGGGVCYNCGEEGHFARECPNVGKLNE*
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mRNA from alignment at Vu09:33826889..33829247+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1; organism=Vigna unguiculata; type=mRNA; length=2359bp; location=Sequence derived from: Vu09:33826889..33829247+ (Vigna unguiculata
GAATAATGTGTTCGGATAAAGCATGGGAAGTGGATGGCGAGCATAACAGA
GAGAGTGAAATTATAGCAAGTAGGATGAGGATGGGTCCCACATAACTATA
TTAATATATCGTTTTTATTTTCATTCCACTGACACAAAATCCATACATAC
AATACCACATCAGCGCCTCCGTGGGAATGGACGAATCACAATCGCCGCGC
ATCGCTCTTCCCTCCAATTCAGCGTCCTAAGCTTTCCCAAACCCCGAAAG
GGAAACTTCTAGGTTCTTCTAGAACCTTCTATTCCGTTCCAACTCTTCAG
GACCCATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAAC
GCGCAGAAGGGTTTCGGATTCATAACTCCCCAAGACGGCTCCGAAGATCT
CTTCGTTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCG
AGGGCCAGTCTGTCGAGTTCCTCCTCGATTACGGCGACGACGGCCGTGCC
ATGGCCGTCGACGTCACCTCTGCTGTTAGATCTCGCCGTCCAGGCAGTTT
TCGCGGCGGGAGCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAAGCC
GTGGTGGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGTGGA
GGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTCGCTAGGGA
TTGCTACCAGGGACAGGGTGGTGGTGGTGGTGGTGGTGGTGCAGGTGGTG
ATGGTAGGATACGGAGACGCGGTGGAGGAGGAGGCGGCGGGGGTGGTGGT
GGTGGTGGTGGCGGAGGAGGAGTGTGTTATAACTGTGGAGAGGAAGGGCA
TTTTGCAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGAGAATGTG
GGGTTTATGAATTATGATTTCTTCTATTGTAGTGTGAGTCTGCTATTATT
GGTTGCATGGGTCTGTTATTATTGGTTTCTAGCCATTGGCATTTGTTCCA
AATATGTTTTGCAGGTTTTGCTAATTGTTTCATCTAATGCGGTTCTTTTG
ATGAAGTGATTATGGTTGTTCCTCCTCTTGAATTTGAAGCAAGGAAAGCC
ATAATAACTAATGGCTAATTTAATCAATTTATTTATTCAGCAAATATTGC
ATTCGTTTTTGTGCTCTGTCCTCAAACTATCTGTATTCTGATCACTTCCG
ATGCAAATTTCAGCTTCTCACTTATGTGCTTTTATATGTCTGTATTTTCA
AGTGGTGTGCAACAATTCTACACTATGAATCTATGAAAACTCGTGTTAAT
ATTTTTTTAATGTTGTAAAAGCAAATAAAATAATTATAACTAATAATTTT
TTGCATATTGAGCTGGTGCTCTTTAATTATTTTGTAAGTGTATCTATATG
CTTTTAATGCTTTAATTAATGGTTTATTTCTTTAGATTTCTTGCGGATTA
TTTTTCCCTAGATATGCATATTAAAGAAGGATATACAAAAGTTGGTAGAA
AGAAGTTCAATTTTCATCTGTAATTCATGCAAATATTGTGAGGCAAGATC
ACTGCTCTGATAAGAAGCGGGCATTTACGAAGTGGTCCTACCTTCAAAGA
TATGATATGATAAGTAGTCTATTCTGTCCTCTAGTTTTGTGTGTGGATAA
TATGTTGTCACTTCTGATCTTTATTCATGAACATAATAAATGTTGTGGAT
GTTTTTATTTTTAATTTGTTCATTTAAGGCATTGTTTTATTCTTTTTAAA
GGTTTTACTGGCAGAGGTTTTCTAAACTTTAATACTGTGAAAAGTTGTGA
ATAAATGCAGTCTTCCATATCCATTTTGGTTAAAAAAATAGTTGCCACAA
CTAGAACTTTAATGTTGCAGTGACAGCTTGGGTTCTGATGTAGAACCACA
CTCATGCCTTTACATTTTTTTATTAGAAGTATTATACTACATCACATTTG
TAATAAGTATATTTAATTGTCAGATCCGAGACTAATTATGATGACAGATA
TGCTTAATCCGTGTGGTGTGATTAGAAAAAAAAAAAAAGAAGTTAACCTA
GTTTCACTCGAAGTTGATATGTTGTCCTATGTCATGCATTCTGATGGTTG
CATGAGAGCATCGTGGGTTGCTTCCGCCCCTTGGTTCTTTTTTTTTATAA
TTGCTAGAAAAATCTTTGCATTTTCCTCTCTTTTTTATTTTCAACCTAAA
AATATATATGCTAACTCTTGTTTCTTCTGAAATGTATCTTTAGATGTTTA
ATGCTTATGATAATAGGTAGGTGTCATCAGGATAATTTTGAGTGGCTTGT
GAATATCCATAGTAATCGAAATCCTGGTTTTTCTTTTTCTTCTGTCCATC
ACTTTGAAC
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Coding sequence (CDS) from alignment at Vu09:33826889..33829247+

>Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1; organism=Vigna unguiculata; type=CDS; length=588bp; location=Sequence derived from: Vu09:33826889..33829247+ (Vigna unguiculata
ATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCA
GAAGGGTTTCGGATTCATAACTCCCCAAGACGGCTCCGAAGATCTCTTCG
TTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCGAGGGC
CAGTCTGTCGAGTTCCTCCTCGATTACGGCGACGACGGCCGTGCCATGGC
CGTCGACGTCACCTCTGCTGTTAGATCTCGCCGTCCAGGCAGTTTTCGCG
GCGGGAGCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAAGCCGTGGT
GGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGTGGAGGAGG
ACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTCGCTAGGGATTGCT
ACCAGGGACAGGGTGGTGGTGGTGGTGGTGGTGGTGCAGGTGGTGATGGT
AGGATACGGAGACGCGGTGGAGGAGGAGGCGGCGGGGGTGGTGGTGGTGG
TGGTGGCGGAGGAGGAGTGTGTTATAACTGTGGAGAGGAAGGGCATTTTG
CAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR001878Znf_CCHC
IPR011129CSD
IPR019844CSD_1
IPR036875Znf_CCHC_sf
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding