Vigun09g169400.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.140e-25 Identity = 79/190 (41.58%), Postives = 96/190 (50.53%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPECYNCGRIGHFARDCYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCYNCGEEGHFARECPNVGKLNE 585
RSTG V WFNA KG+GFITP DGS +LFVH +SI S+GYRSLT G +VEF + G DG+ AV+VT+ G G GGGG CYNCG +GH ++DC GGGGGGG GG CYNCG+ GHFAR+C + G ++
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP----------------------GGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGI----------------------GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQ 155
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.704e-24 Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 1 MAET--RRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVT 213
MAE +R+ GTVKWF+ QKGFGFITP DG EDLFVH + IRS+G+RSL EG++VEF ++ G DGR AVDVT
Sbjct: 1 MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGRTKAVDVT 73
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SHIFL (Cold shock protein CspA OS=Shigella flexneri OX=623 GN=cspA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SALTY (Cold shock protein CspA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=cspA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SALTI (Cold shock protein CspA OS=Salmonella typhi OX=90370 GN=cspA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_SALEN (Cold shock protein CspA OS=Salmonella enteritidis OX=149539 GN=cspA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_KLEAK (Major cold shock protein OS=Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006) OX=1028307 GN=cspA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_ECOLI (Cold shock protein CspA OS=Escherichia coli (strain K12) OX=83333 GN=cspA PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_ECOL6 (Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=cspA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69
BLAST of Vigun09g169400.1 vs. DB:Swiss
Match: CSPA_ECO57 (Cold shock protein CspA OS=Escherichia coli O157:H7 OX=83334 GN=cspA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.848e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 16 RSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTS 216
+ TG VKWFNA KGFGFITP DGS+D+FVHF++I++DGY+SL EGQ V F ++ G G A A +VTS
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPA-AGNVTS 69 The following BLAST results are available for this feature:
BLAST of Vigun09g169400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1; organism=Vigna unguiculata; type=mRNA; length=2359bpback to top protein sequence of Vigun09g169400.1_Vu_IT97K-499-35_v1.1 >Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=196bpback to top mRNA from alignment at Vu09:33826889..33829247+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1; organism=Vigna unguiculata; type=mRNA; length=2359bp; location=Sequence derived from: Vu09:33826889..33829247+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:33826889..33829247+ >Vigun09g169400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g169400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g169400.1; organism=Vigna unguiculata; type=CDS; length=588bp; location=Sequence derived from: Vu09:33826889..33829247+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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