Vigun09g177500.1

Transcript Overview
NameVigun09g177500.1
Unique NameVigun09g177500.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length2337
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:34977561..34982531 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL368Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL177Pisum sativum Cameor genome v1aPisum sativum
crvuL108Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL497Pisum sativum Cameor genome v1aPisum sativum
crvuL576Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL569Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL713Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL787Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL146Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL436Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0791Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1110Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0202Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0322Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0369Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0641Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0773Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1209Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL537Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL716Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR640Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR675Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL101Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL093Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL314Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL315Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL291Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL292Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL402Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL409Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL595Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR455Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL140Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL404Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL130Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL478Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL607Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL150Cicer arietinum
carvuL411Cicer arietinum
ccavuL336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL438Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR762Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR780Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR851Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL295Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL310Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL464Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL491Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL624Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL693Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR512Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr08.1839Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_01633Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.03G173600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-KK1_005167Cajanus cajan Asha genome v1.0Cajanus cajan
Va04G058070.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg34778.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058890298.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-KK1_034109Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.02G091400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Va07G045710.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.1g167000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_02G00980.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_02804Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.1g213080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
PvulFLAVERTChr08.1100Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.02G119100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat2g071280.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr09.1917Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan07g190300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigst.03G109900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_03G01223.1Vigna umbellata FF25 genome v1.0Vigna umbellata
PvulFLAVERTChr09.319Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-TanjilR_04972Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_11685.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014644716.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat02G0224600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan04g192000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.008G174100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.009G032000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g100900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g100900.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun09g177500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g177500Vigun09g177500_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g177500.1Vigun09g177500.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g177500.1_Vu_IT97K-499-35_v1.1Vigun09g177500.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g177500.1.v1.1.five_prime_UTR.1Vigun09g177500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g177500.1.v1.1.CDS.1Vigun09g177500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g177500.1.v1.1.CDS.2Vigun09g177500.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g177500.1.v1.1.CDS.3Vigun09g177500.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g177500.1.v1.1.CDS.4Vigun09g177500.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g177500.1.v1.1.CDS.5Vigun09g177500.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g177500.1.v1.1.CDS.6Vigun09g177500.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g177500.1.v1.1.three_prime_UTR.1Vigun09g177500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.718e-34
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTTFTK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:   30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 111
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.036e-34
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTTFTK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.747e-34
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTTFTK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYL 88
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.785e-33
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   94 FGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            FGDT  TK+FVGGLAW+T  E M  +F ++GDILEAVII+DK T +SKGYGFVTF D ++A RAC D  PII+GRRANCN+ASL
Sbjct:   11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASL 94
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.865e-33
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTT+TK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.927e-33
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTT+TK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.269e-33
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTT+TK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.071e-33
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTTFTK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ T KS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYL 88
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.159e-33
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTT+TK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
[Close]
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.369e-33
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
            DTT+TK+FVGGL + T    +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT  D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct:    7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
The following BLAST results are available for this feature:
BLAST of Vigun09g177500.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RBM38_HUMAN3.718e-3467.07RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=... [more]
RBM38_CHICK5.036e-3467.07RNA-binding protein 38 OS=Gallus gallus OX=9031 GN... [more]
RBM38_XENTR8.747e-3467.07RNA-binding protein 38 OS=Xenopus tropicalis OX=83... [more]
ARP1_ARATH1.785e-3367.86Probable RNA-binding protein ARP1 OS=Arabidopsis t... [more]
RB24B_XENLA1.865e-3365.85RNA-binding protein 24-B OS=Xenopus laevis OX=8355... [more]
RB24A_XENLA2.927e-3365.85RNA-binding protein 24-A OS=Xenopus laevis OX=8355... [more]
RBM24_XENTR3.269e-3365.85RNA-binding protein 24 OS=Xenopus tropicalis OX=83... [more]
RBM38_XENLA4.071e-3365.85RNA-binding protein 38 OS=Xenopus laevis OX=8355 G... [more]
RBM24_MOUSE7.159e-3365.85RNA-binding protein 24 OS=Mus musculus OX=10090 GN... [more]
RBM24_CHICK7.369e-3365.85RNA-binding protein 24 OS=Gallus gallus OX=9031 GN... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 39..111
e-value: 1.3E-24
score: 97.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 40..97
e-value: 4.6E-17
score: 61.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 38..115
score: 16.773
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 5..132
e-value: 2.8E-26
score: 94.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..146
NoneNo IPR availableCDDcd12384RRM_RBM24_RBM38_likecoord: 38..113
e-value: 2.98797E-45
score: 145.451
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 21..134

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1; organism=Vigna unguiculata; type=mRNA; length=2337bp
AAATTTAAATTGAAAATCATTTTCACTTTTTAATTGCCTCTTTAAAATGT
GAGATCAGCCATTGTATAATTACCCTTTTTTTTTTCGGTTAAAGGGTAAT
TTAATAGACCGTACTGAAGGAATGGTTGTAAATGTTTTCAAAGAGACAGA
AAAAAGAAAGGGAGTTTGGTAAATGTGGTTGAGTTACAGAAAAAGCGAAG
CGAAAAATCTAACAAGGGAGAAGAAGAGAAGGAGAAGCATATTAAGGGTA
GTAAGAGTGAGTATATTAATGCAAAGACAGTGAGGACACACTTGACAACA
CTCGTAGTGAGATGGTATATAGTATCACAAATCCCTTGTCTTTCTTCCTT
CGCTTTTTCTGCCAGCAAATTAGAGTTAGCACCTGTCAGATCTCTCTCAT
TCACACACCCTTTTATTCAAAATAAATTTCTTTACTCTCCTTATATATTT
TTGTTGCAATCAACCAACGCCTCTGTTCCAAACAACCATCATAAACCATG
CCCACCCTCTTCTCTCACCCTCTTCAAATGCAATGATTCCACTGCTGCCA
AAACCAACACACTAGGGAAGGCAAAGGCACGCATATATAGCACGGAGGAG
AAACATTTTATGGAGTTTTCGCCTTCCCAAGAGTTGAAGAAGGAGCTTAA
ATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGGACACCCATTTCTTC
TCTGGAAGCCATGGCTCATCACCACCCGCATTATCGGTCACCCTTCGGAG
ACACTACCTTCACCAAACTGTTCGTGGGAGGACTAGCCTGGGAGACTCCC
ACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGAGACATTCTTGAAGC
TGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGTTTCG
TAACATTCTGCGACCAAGAATCAGCAAGAAGAGCATGTGCTGATCCAAAT
CCAATAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGGAG
GACTCGACCTTCACCACCTCGAGGGAGGAGTATAGTTCAAGGTGGAGGAG
GAACAGTACAGAGTGTTCCGGGATCCGGACCGCCGCCGTCGCTGCCGCCA
GCACCTGCTGTTCTGTATCCGCCATATGGCTACGCAGCCTACACTCCTGA
TTATGGATACCACCACCAAGCGACGTTGTACAACCCACAGATTCAGCAAC
CACAATACTATCAACAAGTCTATGGAGCATCATCTTCAACAATGAGCACC
CCGTATTACTATGGCTACTCTTTGCAAGCACCAAGAAACACATTCTCTTC
ACCCCAGGCAAATCGCCTATCACCTGGACCATCTTATCTGTACTATCCTA
CACCCATGGAAGTCTCATTCTCTGCATATCGCCCACTACAATCACCAATC
ACCCAAAACTTTCCTTCTCCAACTGATTCACAGAGTCAGCAGCGTATCTC
CTCTGAAACAGCAGCCACTTCAGAAAGTTCAAATACCCAAGGGAAGAACT
GataaatatatatatatatataCGCCTACTAAGTTTCAACTGTTTAAACT
TCAAGTTAATTTTCATCACATTAATTCTTCATCTTTTTCCCCATTATATC
ATAATTTTTTTAGTCCACAAGCTTTTGCTTTAGGAAATAATGGCTTAGCT
GATTACCGGTGTTCTCCACACCTGTGGCAATTTCGAAAGATGGACTAAAC
AACttcttcattcatctaatcttcattctcttctcctttcCTTTAAGGAT
TTTCACTATATACATACTAAAAATTATATCCTCACACACATGTAGGACGT
ACTAATCAAAAGTGTGAGAAGTGGAATTAATGAATGAATCTTTGCTACTA
TCAAAAGTGTGAGAAATCTACTACTAAGATTAACTACTCTTCTACTCATG
TTCTGCAACATGTGTCTAAAATGAAACAAAAAGGGGATCCATAACTCACG
TCGCTAGGGGAGGATGAAAAATCAAGTAATTCTCAAATAAAACTTCTTTG
TACTGTTCTTCACTCGCTTTGATATCGCACGTTGGTGTGAATTTCCAAGC
TCAATACCCATAAGTTAGTACATATTGGATGAGAAATCAAACACGAACTT
TAATTGCTTGTTGGGACGTGAGTTTCTCGATTGATTTTTACAGTATGTAT
AAATAAGGGAAATGTCAATTTAATTATTTGCTTATTTTCCAACTTCTAGA
CCACATTGTAATGGTTTCTTACAACTGTCTTTCATTGAATTCACATAACT
TTTAGTTACAAATGATAAAAAATATGTtttatttatttatttatgacatc
tttttatcaacttctttaACATAATTAGTCAATTCTT
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protein sequence of Vigun09g177500.1_Vu_IT97K-499-35_v1.1

>Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=284bp
MSETASLHAQTRTPISSLEAMAHHHPHYRSPFGDTTFTKLFVGGLAWETP
TEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPN
PIIDGRRANCNIASLGRTRPSPPRGRSIVQGGGGTVQSVPGSGPPPSLPP
APAVLYPPYGYAAYTPDYGYHHQATLYNPQIQQPQYYQQVYGASSSTMST
PYYYGYSLQAPRNTFSSPQANRLSPGPSYLYYPTPMEVSFSAYRPLQSPI
TQNFPSPTDSQSQQRISSETAATSESSNTQGKN*
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mRNA from alignment at Vu09:34977561..34982531+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1; organism=Vigna unguiculata; type=mRNA; length=4971bp; location=Sequence derived from: Vu09:34977561..34982531+ (Vigna unguiculata
AAATTTAAATTGAAAATCATTTTCACTTTTTAATTGCCTCTTTAAAATGT
GAGATCAGCCATTGTATAATTACCCTTTTTTTTTTCGGTTAAAGGGTAAT
TTAATAGACCGTACTGAAGGAATGGTTGTAAATGTTTTCAAAGAGACAGA
AAAAAGAAAGGGAGTTTGGTAAATGTGGTTGAGTTACAGAAAAAGCGAAG
CGAAAAATCTAACAAGGGAGAAGAAGAGAAGGAGAAGCATATTAAGGGTA
GTAAGAGTGAGTATATTAATGCAAAGACAGTGAGGACACACTTGACAACA
CTCGTAGTGAGATGGTATATAGTATCACAAATCCCTTGTCTTTCTTCCTT
CGCTTTTTCTGCCAGCAAATTAGAGTTAGCACCTGTCAGATCTCTCTCAT
TCACACACCCTTTTATTCAAAATAAATTTCTTTACTCTCCTTATATATTT
TTGTTGCAATCAACCAACGCCTCTGTTCCAAACAACCATCATAAACCATG
CCCACCCTCTTCTCTCACCCTCTTCAAATGCAATGATTCCACTGCTGCCA
AAACCAACACACTAGGGAAGGCAAAGGCACGCATATATAGCACGGAGGAG
AAACATTTTATGGAGTTTTCGCCTTCCCAAGAGTTGAAGAAGGAGCTTAA
ATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGGACACCCATTTCTTC
TCTGGAAGCCATGGCTCATCACCACCCGCATTATCGGTCACCCTTCGGAG
ACACTACCTTCACCAAACTGTTCGTGGGAGGACTAGCCTGGGAGACTCCC
ACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGAGACATTCTTGAAGC
TGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGTTTCG
TATGTGCTCTCTTTCTCTTCTTCTCCACGCTTCACATACCTTCAATACCA
CCAAGTTAACGAAACTATATCTGTGTACTATGAATTCAACAACAGGTAAC
ATTCTGCGACCAAGAATCAGCAAGAAGAGCATGTGCTGATCCAAATCCAA
TAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGGAGGACT
CGACCTTCACCACCTCGAGGTTATAACTTACATCCTTTGATATATTATTA
ATATTATCCCTCGTAACGTATAAAACTGATACTGCTTGTCTTTTGATATG
TGAACATCCAAGTACTTTTTTCCTCAGTACATGTTCATCACTTTTAATAG
AAGAGAGAAAAAAAAAAAAAAAAACTATTCTGTGTGATTTGATATGACAA
GGTGTGTCATTTACAGGGAGGAGTATAGTTCAAGGTGGAGGAGGAACAGT
ACAGAGTGTTCCGGGATCCGGACCGCCGCCGTCGCTGCCGCCAGCACCTG
CTGTTCTGTATCCGCCATATGGGTGAGTTGAGTTGAGTTATCTTGATTGA
GTGGAGGCATTAATAAATCATAATTTGATAGCACTCATAGTCAAAGGAAC
TGGTCCATGATGTTAATGGGGAAGTGCATGTAGACGCACTACATCTTACT
GTCTGCATATGTTGCTCACTGCTCCTCACCAGTTATAGTAGGCATCAGTG
TCAGCCTAAAAATCATATCGTAAATAAAGTACGAATGGGAAAAGGTTGCT
CTGCCATCCACATCCACATAACGTGCATTATTGCTACTTCTATTTTCCAT
AATCTCATCTCACTTCCTTAATGCTTAATCAACTGCATTTTTTTAGCTCC
TTAATCAATTGCTTTCAATATTTTTCGCCTCATCTTTCTTTAAATCTGTA
TGTATCAGTTTTAAATTTGAAAATGCCGTAAATTGAATAAAGCGTATGGA
GGCTTTATTAGATACGTAGCATCATTGATATAGATAGTTACAGACAACTA
TGGTAATAGTAAAAGTGCTAGTGATAACAGCTACGGTCAGTAGATGTGTG
ACCCCTGACAGTGCATATACGTGTATATATGTCTCTGTGGTCCTTGAACA
ATTAATTTAATTTATGATCTTGTACAAGATAAATCCCACAGCTCTCGGTA
CTCTTGCATCTTCTCGATCATTGAGTCATTTTCGCACCAGCATGTACTCT
TCAGGGCTCTAAAATACTATAAATGTAAAAGTTTAGCTTAGAGTTCAAAA
GTAGGCATGGAAAATTGTATTCAAAAGTACAGAGATGCAGACTTTTTCTA
CTTGGTACCTTTGACTGGAAAATGCTAATATTAACTTTAGATGCTTTGCA
CTAAAGCAAAAGCTATTATATTGAAATACTGTGCTTCTGAAGTAAGCTAT
TCAATTTGACGAGTTGCATATATAGTGACAATGATTACAGTTTCATTTCT
TCAAAAGAGTGTGACTCATCAGCTTAACCTGAGTTTACCGAGTTTAATTT
GTCATCTATTTATGCATGTATTCAAATATATCACTTATTATACCACCTTT
GTCATTCTTATTTATATCTTTACATAGTTAGGTGGTAAAGGATAATGTTA
AATAGGTGTAACAATTTGTTTTGTGTGAAAGTATTACTATGCCTGAATTA
AGTCACGGTAAATTTAAACTTGGGAACTGTGTACCAGGCATCAATGGTAG
CACACAAACGTTAATCAATCTCTGTTTCTTGCTCTCTTTAGACACTGAAC
AACGAGGGACCCACGACAATATACGACGTATACTGATGTTACCCGAAAAA
CATTACATAATTCACAACTGCATGCTATTTTGAATGATTACTTTATTCTC
AAAGAAAAATGCAGTAACGCATGCAATTTACATTATTTTGCCACTGATTA
AACTCCTTTGGACTTTACTCTCTCTCAGCTACGCAGCCTACACTCCTGAT
TATGGATACCACCACCAAGTAAGTGTCTTTCTCTGTTATGTAGATTTTAA
CGATGATATCTGGATTTAGCAAGTATTAGTGGAGAACAGTTGGATAATGG
TATAAGTTAATGAATAATGATTGTACGAAAACAGGCGACGTTGTACAACC
CACAGATTCAGCAACCACAATACTATCAACAAGTCTATGGAGCATCATCT
TCAACAATGAGCACCCCGTATTACTATGGCTACTCTTTGCAAGCACCAAG
AAACACATTCTCTTCACCCCAGGCAAATCGCCTATCACCTGGACCATCTT
ATCTGTACTATCCTACACCCATGGAAGTCTCATTCTCTGCATATCGCCCA
CTACAATCACCAATCACCCAAAACTTTCCTTCTCCAACTGGTACCTTTAA
CTCATCCCTTACACTCTTTACTTAGTTTAATTTAATTACTTTTCATCATT
CAATTATTCTTTCTTTCAAAAACATATTTCATTCACACGTATACCACAGA
GATGGTGCGCGAGTGAGAGAGACAGATGTGTGCATTATGATGCGTTTACT
GACACACTATATATTATGATTTGGCTGCAATACATGGGCATGGGGTCCAC
ATGGGCAACCACAGAGCCATGTGAATGAGCTGTCTCGGTTGCGCCATGAA
TCAATAGGTCAATGTGGAAAGTCATGACAGAGTTAGAGAGGGTCATCGTG
TAAAGTAACAGTGGATACATGTGATAGAATGGGGTGGTTAATTCTTTTTA
TATATATTACTAGTTATATCTTTAAGTCACTCAAATCTTCTACCATTCAT
GTGTTGCCTTGCCCCCACATGCATGTTAGATAATATAAAGTTTTATTTTA
CAGAACAGAAAAACAGTTTTTCCATTTCACTAAATTTTCACATTCCTAGC
CAACAAAAGCTACATGTGTATGGAAGATCCTGTGAAATGTTTCTTTACTA
TGAAACACAAACATGTTTGCAAGAGTGAATTTCGTCAGAGACTAGCCGTG
GTCTTACTTTGTTTGCTTTTCTTTAAAGAGTCTTATCTGGTTTTCTGTTC
TTTCTTTGCCCATGTGCGCAAGATATTATATAGTAATAACAAAATAATTG
TCGAAAATGACATTGCTAGCTACCATTTATAAATGTACCTGCTTATGATC
TCTATATTTGAGCATAACTTCAATTATTGTTTATTAATTATGTGGTTGAT
CTTGATCAGATTCACAGAGTCAGCAGCGTATCTCCTCTGAAACAGCAGCC
ACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTGATAAATATATATATA
TATATACGCCTACTAAGTTTCAACTGTTTAAACTTCAAGTTAATTTTCAT
CACATTAATTCTTCATCTTTTTCCCCATTATATCATAATTTTTTTAGTCC
ACAAGCTTTTGCTTTAGGAAATAATGGCTTAGCTGATTACCGGTGTTCTC
CACACCTGTGGCAATTTCGAAAGATGGACTAAACAACTTCTTCATTCATC
TAATCTTCATTCTCTTCTCCTTTCCTTTAAGGATTTTCACTATATACATA
CTAAAAATTATATCCTCACACACATGTAGGACGTACTAATCAAAAGTGTG
AGAAGTGGAATTAATGAATGAATCTTTGCTACTATCAAAAGTGTGAGAAA
TCTACTACTAAGATTAACTACTCTTCTACTCATGTTCTGCAACATGTGTC
TAAAATGAAACAAAAAGGGGATCCATAACTCACGTCGCTAGGGGAGGATG
AAAAATCAAGTAATTCTCAAATAAAACTTCTTTGTACTGTTCTTCACTCG
CTTTGATATCGCACGTTGGTGTGAATTTCCAAGCTCAATACCCATAAGTT
AGTACATATTGGATGAGAAATCAAACACGAACTTTAATTGCTTGTTGGGA
CGTGAGTTTCTCGATTGATTTTTACAGTATGTATAAATAAGGGAAATGTC
AATTTAATTATTTGCTTATTTTCCAACTTCTAGACCACATTGTAATGGTT
TCTTACAACTGTCTTTCATTGAATTCACATAACTTTTAGTTACAAATGAT
AAAAAATATGTTTTATTTATTTATTTATGACATCTTTTTATCAACTTCTT
TAACATAATTAGTCAATTCTT
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Coding sequence (CDS) from alignment at Vu09:34977561..34982531+

>Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1; organism=Vigna unguiculata; type=CDS; length=852bp; location=Sequence derived from: Vu09:34977561..34982531+ (Vigna unguiculata
ATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGGACACCCATTTCTTC
TCTGGAAGCCATGGCTCATCACCACCCGCATTATCGGTCACCCTTCGGAG
ACACTACCTTCACCAAACTGTTCGTGGGAGGACTAGCCTGGGAGACTCCC
ACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGAGACATTCTTGAAGC
TGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGTTTCG
TAACATTCTGCGACCAAGAATCAGCAAGAAGAGCATGTGCTGATCCAAAT
CCAATAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGGAG
GACTCGACCTTCACCACCTCGAGGGAGGAGTATAGTTCAAGGTGGAGGAG
GAACAGTACAGAGTGTTCCGGGATCCGGACCGCCGCCGTCGCTGCCGCCA
GCACCTGCTGTTCTGTATCCGCCATATGGCTACGCAGCCTACACTCCTGA
TTATGGATACCACCACCAAGCGACGTTGTACAACCCACAGATTCAGCAAC
CACAATACTATCAACAAGTCTATGGAGCATCATCTTCAACAATGAGCACC
CCGTATTACTATGGCTACTCTTTGCAAGCACCAAGAAACACATTCTCTTC
ACCCCAGGCAAATCGCCTATCACCTGGACCATCTTATCTGTACTATCCTA
CACCCATGGAAGTCTCATTCTCTGCATATCGCCCACTACAATCACCAATC
ACCCAAAACTTTCCTTCTCCAACTGATTCACAGAGTCAGCAGCGTATCTC
CTCTGAAACAGCAGCCACTTCAGAAAGTTCAAATACCCAAGGGAAGAACT
GA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding