Vigun09g177500.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 3.718e-34 Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTTFTK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 111
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 5.036e-34 Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTTFTK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 8.747e-34 Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTTFTK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYL 88
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.785e-33 Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1 Query: 94 FGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
FGDT TK+FVGGLAW+T E M +F ++GDILEAVII+DK T +SKGYGFVTF D ++A RAC D PII+GRRANCN+ASL
Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASL 94
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.865e-33 Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTT+TK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.927e-33 Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTT+TK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 3.269e-33 Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTT+TK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 4.071e-33 Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTTFTK+FVGGL + T +RKYF+ FGDI EAV+ITD+ T KS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYL 88
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 7.159e-33 Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTT+TK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88
BLAST of Vigun09g177500.1 vs. DB:Swiss
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 7.369e-33 Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 100 DTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASL 345
DTT+TK+FVGGL + T +RKYF+ FGDI EAV+ITD+ TGKS+GYGFVT D+ +A RAC DPNPIIDGR+AN N+A L
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 88 The following BLAST results are available for this feature:
BLAST of Vigun09g177500.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1; organism=Vigna unguiculata; type=mRNA; length=2337bpback to top protein sequence of Vigun09g177500.1_Vu_IT97K-499-35_v1.1 >Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=284bpback to top mRNA from alignment at Vu09:34977561..34982531+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1; organism=Vigna unguiculata; type=mRNA; length=4971bp; location=Sequence derived from: Vu09:34977561..34982531+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:34977561..34982531+ >Vigun09g177500.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g177500.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g177500.1; organism=Vigna unguiculata; type=CDS; length=852bp; location=Sequence derived from: Vu09:34977561..34982531+ (Vigna unguiculataback to top |