Phvul.002G048000.1

Transcript Overview
NamePhvul.002G048000.1
Unique NamePhvul.002G048000.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02supercontigChr02:4459970..4461940 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR167Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL310Pisum sativum Cameor genome v1aPisum sativum
pspvL613Pisum sativum Cameor genome v1aPisum sativum
pvvuR210Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR274Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0405Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0406Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL366Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipvL1033Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL333Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL930Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL780Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0711Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1163Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0534Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0583Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0929Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1104Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1289Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL422Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR218Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR249Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR226Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR268Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR222Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR263Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR197Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR185Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR267Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvuaR245Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR347Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL298Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL751Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL385Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL718Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL310Cicer arietinum
carpvL774Cicer arietinum
ccapvL267Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL578Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR266Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR271Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR238Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR243Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR251Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR266Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR260Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR342Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR338Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR197Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR249Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR192Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR256Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g119000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.3g148400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cc_v2.0_04885.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_007763Cajanus cajan Asha genome v1.0Cajanus cajan
Psat06G0568100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058918262.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr02.1000270Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.002G048000Phvul.002G048000_Pv_G19833_v2.1Phaseolus vulgarisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G048000.1.v2.1.CDS.3Phvul.002G048000.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G048000.1.v2.1.CDS.2Phvul.002G048000.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G048000.1.v2.1.CDS.1Phvul.002G048000.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G048000.1.v2.1.three_prime_UTR.1Phvul.002G048000.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G048000.1.v2.1.five_prime_UTR.2Phvul.002G048000.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR
Phvul.002G048000.1.v2.1.five_prime_UTR.1Phvul.002G048000.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G048000.1Phvul.002G048000.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.002G048000.1_Pv_G19833_v2.1Phvul.002G048000.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


Homology
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 2.458e-91
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            MVR+SVLNDALKSMYNAEKRGKRQVM+RPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 8.592e-91
Identity = 125/130 (96.15%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            MVR+SVLNDALKSM+NAEKRGKRQVM+RPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 260.766 bits (665), Expect = 2.023e-90
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            MVRVSVLNDALKSM+NAEKRGKRQVM+RPSSKV+IKFLMVMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 4.761e-90
Identity = 124/130 (95.38%), Postives = 129/130 (99.23%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            MVR+SVLND LKSMYNAEKRGKRQVM+RPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.661e-85
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            MVR SVLND LKSM NAEK+GKRQVM+RPSSKVIIKFL VMQKHGYI EFEYVDDHR+GKIVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFGYIVLTTSAGIMDHEEAR+KNVGGKVLGFFY
Sbjct:    1 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPS22A PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 4.156e-75
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus OX=4911 GN=RPS22 PE=3 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 6.808e-75
Identity = 100/130 (76.92%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPS22B PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 6.808e-75
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRSSVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RPS22 PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 9.256e-75
Identity = 100/130 (76.92%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
[Close]
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=RPS22 PE=3 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 1.079e-74
Identity = 101/130 (77.69%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:    1 MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 390
            M R SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQ+HGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
The following BLAST results are available for this feature:
BLAST of Phvul.002G048000.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
R15A1_ARATH2.458e-9196.9240S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
RS15A_BRANA8.592e-9196.1540S ribosomal protein S15a OS=Brassica napus OX=37... [more]
RS15A_DAUCA2.023e-9096.1540S ribosomal protein S15a OS=Daucus carota OX=403... [more]
R15A4_ARATH4.761e-9095.3840S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
R15A3_ARATH1.661e-8590.0040S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS22A_YEAST4.156e-7578.4640S ribosomal protein S22-A OS=Saccharomyces cerev... [more]
RS22_KLUMA6.808e-7576.9240S ribosomal protein S22 OS=Kluyveromyces marxian... [more]
RS22B_YEAST6.808e-7578.4640S ribosomal protein S22-B OS=Saccharomyces cerev... [more]
RS22_KLULA9.256e-7576.9240S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]
RS22_CANGA1.079e-7477.6940S ribosomal protein S22 OS=Candida glabrata (str... [more]
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 7..130
e-value: 3.0E-22
score: 78.9
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 100..117
IPR000630Ribosomal protein S8HAMAPMF_01302_ARibosomal_S8_Acoord: 2..130
score: 32.486
NoneNo IPR availableGENE3D3.30.1370.30coord: 1..69
e-value: 5.6E-39
score: 133.7
NoneNo IPR availableGENE3D3.30.1490.10coord: 70..130
e-value: 1.3E-35
score: 123.0
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 4..130

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.002G048000.1_Pv_G19833_v2.1

>Phvul.002G048000.1_Pv_G19833_v2.1 ID=Phvul.002G048000.1_Pv_G19833_v2.1; Name=Phvul.002G048000.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=131bp
MVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLMVMQKHGYIGEF
EYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG
YIVLTTSAGIMDHEEARRKNVGGKVLGFFY*
back to top

mRNA from alignment at Chr02:4459970..4461940-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.002G048000.1_Pv_G19833_v2.1 ID=Phvul.002G048000.1_Pv_G19833_v2.1; Name=Phvul.002G048000.1; organism=Phaseolus vulgaris; type=mRNA; length=1971bp; location=Sequence derived from: Chr02:4459970..4461940- (Phaseolus vulgaris
GCAGCGAAGGTCTTTCACTCCGCGCCGTCTCTGAGGTTCAATTCTGGTAA
GAACTTCTTTCAATTTGTTACCGATCCCAAGCCTTCGTCCTTTCGATTTC
ATTCATATTCAATTGTTATTCTTATACTCCACTCCAACTTCGTTTCGATT
ATCATTTTTATGAATGAACTTATGTTTCTTCTGTGCAATTTTATTCTTAC
TTTGTATCCTCGTAAACGGTTTTTTAGTTGTGATAATGGTGAGGGTTAGT
GTCTTGAACGATGCTCTCAAGAGCATGTACAACGCCGAGAAGCGTGGGAA
GCGCCAGGTTATGGTTAGACCATCCTCCAAGGTTATAATAAAATTCCTCA
TGGTGATGCAGAAGCATGGTATTTTTTCTCAACATTAAACCCTAATTACC
TACTTGAATATAATAACGACTTGTTTCAGTGTTGTCACAATTTGTTGTGC
TCTGGTGATTTGTAGGGTACATTGGTGAGTTTGAGTATGTTGATGATCAC
AGGGCTGGGAAAATCGTGGTGGAATTGAATGGGAGGCTGAATAAGTGTGG
GGTTATAAGCCCCCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGA
CTGCTAGACTGCTTCCTTCCAGACAGGTAGCCTTGTAACCCTGCTGAATC
ATGCCTTTGCCTAAGCTGTAAAAAAGATATAATCTGGTTGATGAGTTAGT
TAGTTATTTGAGTCATATTTTCTCAACATTGTGTTTGTTATGAAGCATCT
TTTAATGGTGTGTTTGGATGTGGGGTTTTGGAGGGGAAGGGATTGGAACA
GTTTTTTTAATCTTTGAGATAAGAGAATTACATGATGTTTATGAAAATAA
ACATAATGATAAGATTAATTAAGACACTGATGTTAAGTTTTATTTTTTTT
TCAAAATTACGCCAAGACCTCCTTTAGCTTCTTTCAATTCACACATACCC
CTGATTTTATTTTTGGTAACCCCTTGATTTTTTGGGATACTTCTATACTG
ACAGTTCTCTCACCAAGAACACATTGCAGTGTGTTCCTTAGTAAGGTAGT
TGTTTAAAGTTTAAAAGGAAGGAGTATTGACAGATTTTAAAGTAACTACT
GAAAGTAATTCATTCTAAAAGGATTATTAATTCAGCGACTGTTTAGTTCA
AATGAGGAGAGGGAAGGTGAGAGAAATTTTGATTAGATATTATGTTTGGT
TGAGAGGAGATGAGGAATTTTTATGGGAGAGAGGGGAAACAATCATTTTC
TTTTTTGGTTTTATAAGGACAGGAGAAGTGTTTTAAAAATTGATTTACTC
TTTGTATTCTTGTACTTTTAAATTTCAAAACATAAGTAGGGATGTTCTAT
AGCCATTACAGTTAAAAATGTTTGAAATCTCCTTTTCATTCCCTCCAAGT
TCCTCTAATCTAGAGATGAGCTAAAACTACTTGTGTTGATTTGAAATTGC
TATCCTATCTGTTATTGAACTTAATGTTATCCGTTATTCTGGTGTATGCA
TATGGTTTGTCCTGTTTGCCCCTAAACTTTGATTGGTAATAATCACGCAG
TTTGGGTATATCGTCTTGACAACATCTGCTGGTATCATGGATCATGAAGA
GGCCAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG
ATAGTTTTTTGTTTGTGGTTGGCAATGATTTCAGGTTGAGATTCACCGGT
TTTGATGGAGAATGTGCTAGTTTGCTTGCGACGTAAATTATAGAGAGCAA
AATGATCCTTTTTGTAGTTTTTCCTATTGCCTATTTTGCATTTTATTGTT
TGTGAAAACCACTCTCGTCCTAATCTTTATTTCTATAATTTTTCTTTGTC
GAACCAAATGCTAAGATTAATTTTAGGCACTGCAAATTGTATCTGGTAAA
CTTTTTGTGGTTTCCACAAGGTATATTTGATTTTGAGAAAGGTGAAGGCG
TTTCATTTTTCTTTTGGCTAG
back to top

Coding sequence (CDS) from alignment at Chr02:4459970..4461940-

>Phvul.002G048000.1_Pv_G19833_v2.1 ID=Phvul.002G048000.1_Pv_G19833_v2.1; Name=Phvul.002G048000.1; organism=Phaseolus vulgaris; type=CDS; length=393bp; location=Sequence derived from: Chr02:4459970..4461940- (Phaseolus vulgaris
ATGGTGAGGGTTAGTGTCTTGAACGATGCTCTCAAGAGCATGTACAACGC
CGAGAAGCGTGGGAAGCGCCAGGTTATGGTTAGACCATCCTCCAAGGTTA
TAATAAAATTCCTCATGGTGATGCAGAAGCATGGGTACATTGGTGAGTTT
GAGTATGTTGATGATCACAGGGCTGGGAAAATCGTGGTGGAATTGAATGG
GAGGCTGAATAAGTGTGGGGTTATAAGCCCCCGCTTTGATGTTGGTGTCA
AAGAGATTGAAGGTTGGACTGCTAGACTGCTTCCTTCCAGACAGTTTGGG
TATATCGTCTTGACAACATCTGCTGGTATCATGGATCATGAAGAGGCCAG
GAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_uS8
IPR035987Ribosomal_uS8_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation