Phvul.006G089800.3
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR3 PE=1 SV=1) HSP 1 Score: 504.212 bits (1297), Expect = 3.805e-180 Identity = 239/286 (83.57%), Postives = 264/286 (92.31%), Query Frame = 1 Query: 121 ATNTAKIPMPPLNPKDPFLSKLASVAASSPETFLNPPRNSDTPPFLDIFDSPTLMATPAQVERSVSYNEHRPTRPPPDLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVLWRGQEKIMADVAPPEDWDKGAGINIV 978 A +AKIPMPP+NPKDPFLS LAS+AA+SPE LN P N+D PP+LDIFDSP LM++PAQVERSV+YNEHRP PPPDLPS+LL+GRI+YIGMPLVPAVTELVVAELMYLQ++DPKEPIYIYINSTGTTRDDGETVGME+EGFAIYDS+MQLKNE+HTV VGAAIGQACLLLSAGT GKRFMMPHAKAMIQQPR+PSSGLMPASDVLIRAKEVI NR+ LV+LL+KHTGNS ETVANVMRRPYYMDA KAKEFGVIDR+LWRGQEKI+ADV P E++DK AGI V Sbjct: 44 AKASAKIPMPPINPKDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRILWRGQEKIIADVVPSEEFDKNAGIKSV 329
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=clpR PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.709e-58 Identity = 94/208 (45.19%), Postives = 139/208 (66.83%), Query Frame = 1 Query: 307 RSVSYNEHRPTRPPPDLPSLLLNGRIIYIGMPLVPA----------VTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVL 900 +S Y + PPPDL SLLL RI+Y+GMPL + VT+L++A+L+YLQ+ DP +PIY YINSTGT+ G+ VG ETE FAI D++ +K +HT+ +G A+G A ++LS+GT G R +PHA ++ Q R + G A+D+ IRAKEVI N+ ++++L+ +TG ++E +A M R +Y+ +AKE+G+IDRVL Sbjct: 7 QSSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYRASLPHATIVLNQNRTGAQG--QATDIQIRAKEVISNKQTMLEILSLNTGQTQEKLAKDMDRTFYLTPAQAKEYGLIDRVL 212
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR4 PE=1 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.647e-55 Identity = 96/194 (49.48%), Postives = 131/194 (67.53%), Query Frame = 1 Query: 340 RPPPDLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVLW--RGQE 915 +PPPDL S L RI+Y+GM LVP+VTEL++AE +YLQY D ++PIY+YINSTGTT+ +GE +G +TE FAIYD M +K I T+ VG A G+A LLL+AG G R +P + MI+QP G A+DV I KE+ + +VKL +KH G S E + M+RP Y T+A E+G+ID+V++ RG + Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTK-NGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQG--QATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQ 291
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR1 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 3.353e-53 Identity = 90/191 (47.12%), Postives = 129/191 (67.54%), Query Frame = 1 Query: 328 HRPTRPPPDLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIP-SSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRV 897 RP PPDLPSLLL+ RI Y+GMP+VPAVTEL+VA+ M+L Y +P +PIY+YINS GT + ETVG ETE +AI D++ K++++T+ G A GQA +LLS G G R + PH+ + P++ SSG A D+ I+AKE+ N ++LLAK TG S+E + ++RP Y+ A A ++G+ D++ Sbjct: 163 ERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSG--AAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADKI 351
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=clpR PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 6.159e-50 Identity = 83/184 (45.11%), Postives = 123/184 (66.85%), Query Frame = 1 Query: 379 RIIYIGMPLVPA----------VTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVL 900 RIIY+GMPL + VTEL++A+L+YL++ +P++PIY YINSTGT+ G+ +G ETE FAI D+M +K +HT+ +G A+G A ++LS GTPG R +PHA ++ QPR + G ASD+ IRAKEV+ N+ ++++ A++TG + +A R YM +A E+G+IDRVL Sbjct: 33 RIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPRTGAQG--QASDIQIRAKEVLANKRTMLEIFARNTGQDPDRLARDTDRMLYMTPAQAVEYGLIDRVL 214
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPP_THEYD (ATP-dependent Clp protease proteolytic subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=clpP PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.727e-41 Identity = 78/183 (42.62%), Postives = 113/183 (61.75%), Query Frame = 1 Query: 352 DLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVL 900 D+ S LL RII+IG + V +V+A+L++LQ DP++ I+IYINS G GM + G AIYD+M +K +I T +G A AC+LL+AGT GKRF +PH++ MI QP G A+DV I AKE++ ++ L +LAKHTG E + R ++M A +AK +G++D V+ Sbjct: 19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG---------GMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGFYG--QATDVEIHAKEILKMKDLLNNILAKHTGQPIEKIQKDTERDFFMSAEEAKLYGIVDEVI 190
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPP_AQUAE (ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus (strain VF5) OX=224324 GN=clpP PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.579e-40 Identity = 73/185 (39.46%), Postives = 116/185 (62.70%), Query Frame = 1 Query: 352 DLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVLWR 906 D+ S LL RI+ +G P+ V L+VA+L++L+ DP + IY+YINS G G T G AIYD+M +K ++ T+ +G A +LL+AG PGKR+ +PH++ MI QP G A+D++I A+E+ + L+ +LAKHTG ++ +AN + R Y+M +AK++G+ID+V+ + Sbjct: 26 DIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPG---------GSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMIHQPLGGIQG--QATDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYFMSPYEAKDYGLIDKVIEK 199
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=clpP PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.991e-39 Identity = 73/183 (39.89%), Postives = 112/183 (61.20%), Query Frame = 1 Query: 352 DLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVL 900 D+ S LL R I+IG P+ V LV+A++++L+ DP++ I++YINS G G+ T G AIYD+M +K ++ T+ +G A LL+AG GKRF +P+A+ MI QP G A+D+ I A+E++ R+ L +LL KHTG +E + R ++M A +AKE+G+ID V+ Sbjct: 20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPG---------GVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQG--QATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) OX=126740 GN=clpP PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 7.511e-39 Identity = 72/183 (39.34%), Postives = 114/183 (62.30%), Query Frame = 1 Query: 352 DLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVL 900 D+ S LL RI+++G P+ V LV+A+L++L+ DP + +Y+YINS G G T G AIYD+M +K ++ T+ VG A A +LL+AG GKR+ +P+A+ MI QP + G PA DV I +E++ ++ L ++L+KHTG E + R ++M A +AKE+G++D+V+ Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) OX=390874 GN=clpP PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 7.511e-39 Identity = 72/183 (39.34%), Postives = 114/183 (62.30%), Query Frame = 1 Query: 352 DLPSLLLNGRIIYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDSMMQLKNEIHTVAVGAAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRNNLVKLLAKHTGNSEETVANVMRRPYYMDATKAKEFGVIDRVL 900 D+ S LL RI+++G P+ V LV+A+L++L+ DP + +Y+YINS G G T G AIYD+M +K ++ T+ VG A A +LL+AG GKR+ +P+A+ MI QP + G PA DV I +E++ ++ L ++L+KHTG E + R ++M A +AKE+G++D+V+ Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199 The following BLAST results are available for this feature:
BLAST of Phvul.006G089800.3 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G089800.3_Pv_G19833_v2.1 >Phvul.006G089800.3_Pv_G19833_v2.1 ID=Phvul.006G089800.3_Pv_G19833_v2.1; Name=Phvul.006G089800.3_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=330bpback to top mRNA from alignment at Chr06:20122526..20125776- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.006G089800.3_Pv_G19833_v2.1 ID=Phvul.006G089800.3_Pv_G19833_v2.1; Name=Phvul.006G089800.3; organism=Phaseolus vulgaris; type=mRNA; length=3251bp; location=Sequence derived from: Chr06:20122526..20125776- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr06:20122526..20125776- >Phvul.006G089800.3_Pv_G19833_v2.1 ID=Phvul.006G089800.3_Pv_G19833_v2.1; Name=Phvul.006G089800.3; organism=Phaseolus vulgaris; type=CDS; length=990bp; location=Sequence derived from: Chr06:20122526..20125776- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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