Phvul.006G089900.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.001e-37 Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1 Query: 109 MPSMDEEFQLDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 309 + + +EEF++DSEI+RRILATTKYISYGAL+RNTVPCSRRGASYYNC+ GAQANPYSRGCSAITRCR Sbjct: 49 LSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.443e-34 Identity = 64/115 (55.65%), Postives = 77/115 (66.96%), Query Frame = 1 Query: 22 LFLAICATVLVLSASPTAEAG---ALGMEMMWMPSMD---------------EEFQLDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 312 LFL + V+ + +SP +AG LG + W + D EE ++DSEI+RRILATTKYISY +L+RN+VPCSRRGASYYNCQ GAQANPYSRGCS I RCRS Sbjct: 7 LFLTLTILVVFIISSPPVQAGFANDLG-GVAWATTGDNGSGCHGSIAECIGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.784e-33 Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1 Query: 136 LDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 312 LDSE +RRILAT KYISYGALQ+N+VPCSRRGASYYNC+PGAQANPYSRGCSAITRCRS Sbjct: 57 LDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.209e-30 Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 Query: 136 LDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 309 DS+ISRRILA KYISYGA++RN+VPCSRRGASYYNCQ GAQANPYSRGCS ITRCR Sbjct: 61 FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.244e-30 Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1 Query: 139 DSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 309 DSEI+RRILAT +YISYGAL+RNT+PCSRRGASYYNC+ GAQANPYSRGCSAITRCR Sbjct: 80 DSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.378e-20 Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 Query: 127 EFQLDSEISRRILATTK-YISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306 ++ +DSE +RR LA + YISYGAL++N VPCSRRG SYY+C+ +ANPY RGCS IT C Sbjct: 45 DYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.440e-18 Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 121 DEEFQ--LDSEISRRILAT-TKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306 D+E + +DSE +RR LA +YI Y AL++N VPCSRRG SYY+C+ + NPY RGCSAIT C Sbjct: 41 DDELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF31_ARATH (Protein RALF-like 31 OS=Arabidopsis thaliana OX=3702 GN=RALFL31 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 4.231e-18 Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1 Query: 1 MANSCSWLFLAICATVLVLSASPTAEAGALGMEMMWMPSM--DEEFQLDSEISRRIL-ATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306 M NS + + AI ++ A P M+ S+ ++E + +EISRR+L A +YI Y L+R+ VPC + GASYY+C+ G QAN YSRGC ITRC Sbjct: 1 MFNSTALVIFAILFLLISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRC 104
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana OX=3702 GN=RALFL24 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.548e-15 Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 142 SEISRRILATTK-YISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306 SEISRR++ K YISY L+R+ VPC + GASYY C+ G QAN Y+RGCS ITRC Sbjct: 55 SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRC 109
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match: RLF34_ARATH (Protein RALF-like 34 OS=Arabidopsis thaliana OX=3702 GN=RALFL34 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 2.417e-9 Identity = 43/105 (40.95%), Postives = 51/105 (48.57%), Query Frame = 1 Query: 55 LSASPTAEAGALGMEMMWMPSMDEEFQL-------------DSEISRRIL---ATTKYISYGALQRNTVPCS-RRGASYY--NC-QPGAQANPYSRGCSAITRCR 309 LS +P+ G + W S +EF + D RR L T YISYGAL N VPC R G SYY NC + +PYSRGCS+ITRCR Sbjct: 26 LSDNPSLTLLPDGFD--WPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCR 128 The following BLAST results are available for this feature:
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G089900.1_Pv_G19833_v2.1 >Phvul.006G089900.1_Pv_G19833_v2.1 ID=Phvul.006G089900.1_Pv_G19833_v2.1; Name=Phvul.006G089900.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=105bpback to top mRNA from alignment at Chr06:20133917..20134749- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.006G089900.1_Pv_G19833_v2.1 ID=Phvul.006G089900.1_Pv_G19833_v2.1; Name=Phvul.006G089900.1; organism=Phaseolus vulgaris; type=mRNA; length=833bp; location=Sequence derived from: Chr06:20133917..20134749- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr06:20133917..20134749- >Phvul.006G089900.1_Pv_G19833_v2.1 ID=Phvul.006G089900.1_Pv_G19833_v2.1; Name=Phvul.006G089900.1; organism=Phaseolus vulgaris; type=CDS; length=315bp; location=Sequence derived from: Chr06:20133917..20134749- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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