Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089900.1 Phvul.006G089900.1_Pv_G19833_v2.1-protein Phaseolus vulgaris polypeptide Phvul.006G089900.1_Pv_G19833_v2.1 Phvul.006G089900.1_Pv_G19833_v2.1 Phaseolus vulgaris polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089900.1.v2.1.five_prime_UTR.1 Phvul.006G089900.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 Phaseolus vulgaris five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089900.1.v2.1.CDS.1 Phvul.006G089900.1.v2.1.CDS.1_Pv_G19833_v2.1 Phaseolus vulgaris CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089900.1.v2.1.three_prime_UTR.1 Phvul.006G089900.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 Phaseolus vulgaris three_prime_UTR
Homology
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)
HSP 1 Score: 124.02 bits (310), Expect = 6.001e-37
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1
Query: 109 MPSMDEEFQLDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 309
+ + +EEF++DSEI+RRILATTKYISYGAL+RNTVPCSRRGASYYNC+ GAQANPYSRGCSAITRCR
Sbjct: 49 LSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)
HSP 1 Score: 117.087 bits (292), Expect = 4.443e-34
Identity = 64/115 (55.65%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 22 LFLAICATVLVLSASPTAEAG---ALGMEMMWMPSMD---------------EEFQLDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 312
LFL + V+ + +SP +AG LG + W + D EE ++DSEI+RRILATTKYISY +L+RN+VPCSRRGASYYNCQ GAQANPYSRGCS I RCRS
Sbjct: 7 LFLTLTILVVFIISSPPVQAGFANDLG-GVAWATTGDNGSGCHGSIAECIGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)
HSP 1 Score: 114.005 bits (284), Expect = 5.784e-33
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1
Query: 136 LDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 312
LDSE +RRILAT KYISYGALQ+N+VPCSRRGASYYNC+PGAQANPYSRGCSAITRCRS
Sbjct: 57 LDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)
HSP 1 Score: 108.227 bits (269), Expect = 1.209e-30
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1
Query: 136 LDSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 309
DS+ISRRILA KYISYGA++RN+VPCSRRGASYYNCQ GAQANPYSRGCS ITRCR
Sbjct: 61 FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)
HSP 1 Score: 108.612 bits (270), Expect = 1.244e-30
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1
Query: 139 DSEISRRILATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 309
DSEI+RRILAT +YISYGAL+RNT+PCSRRGASYYNC+ GAQANPYSRGCSAITRCR
Sbjct: 80 DSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)
HSP 1 Score: 81.2629 bits (199), Expect = 4.378e-20
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 127 EFQLDSEISRRILATTK-YISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306
++ +DSE +RR LA + YISYGAL++N VPCSRRG SYY+C+ +ANPY RGCS IT C
Sbjct: 45 DYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1)
HSP 1 Score: 77.411 bits (189), Expect = 1.440e-18
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 121 DEEFQ--LDSEISRRILAT-TKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306
D+E + +DSE +RR LA +YI Y AL++N VPCSRRG SYY+C+ + NPY RGCSAIT C
Sbjct: 41 DDELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF31_ARATH (Protein RALF-like 31 OS=Arabidopsis thaliana OX=3702 GN=RALFL31 PE=3 SV=1)
HSP 1 Score: 76.2554 bits (186), Expect = 4.231e-18
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 1 MANSCSWLFLAICATVLVLSASPTAEAGALGMEMMWMPSM--DEEFQLDSEISRRIL-ATTKYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306
M NS + + AI ++ A P M+ S+ ++E + +EISRR+L A +YI Y L+R+ VPC + GASYY+C+ G QAN YSRGC ITRC
Sbjct: 1 MFNSTALVIFAILFLLISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRC 104
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana OX=3702 GN=RALFL24 PE=3 SV=1)
HSP 1 Score: 68.9366 bits (167), Expect = 3.548e-15
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 142 SEISRRILATTK-YISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 306
SEISRR++ K YISY L+R+ VPC + GASYY C+ G QAN Y+RGCS ITRC
Sbjct: 55 SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRC 109
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Match:
RLF34_ARATH (Protein RALF-like 34 OS=Arabidopsis thaliana OX=3702 GN=RALFL34 PE=2 SV=1)
HSP 1 Score: 53.9138 bits (128), Expect = 2.417e-9
Identity = 43/105 (40.95%), Postives = 51/105 (48.57%), Query Frame = 1
Query: 55 LSASPTAEAGALGMEMMWMPSMDEEFQL-------------DSEISRRIL---ATTKYISYGALQRNTVPCS-RRGASYY--NC-QPGAQANPYSRGCSAITRCR 309
LS +P+ G + W S +EF + D RR L T YISYGAL N VPC R G SYY NC + +PYSRGCS+ITRCR
Sbjct: 26 LSDNPSLTLLPDGFD--WPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCR 128
The following BLAST results are available for this feature:
BLAST of Phvul.006G089900.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot )
Total hits: 10
0 1 Expect = 6.00e-37 / Id = 83.58 Expect = 4.44e-34 / Id = 55.65 Expect = 5.78e-33 / Id = 89.83 Expect = 1.21e-30 / Id = 84.48 Expect = 1.24e-30 / Id = 87.72 Expect = 4.38e-20 / Id = 60.66 Expect = 1.44e-18 / Id = 56.92 Expect = 4.23e-18 / Id = 41.90 Expect = 3.55e-15 / Id = 62.50 Expect = 2.42e-9 / Id = 40.95 Sequence RLF33_ARATH RLF1_ARATH RALF_TOBAC RLF22_ARATH RLF23_ARATH RLF19_ARATH RLF4_ARATH RLF31_ARATH RLF24_ARATH RLF34_ARATH
Match Name E-value Identity Description
RLF33_ARATH 6.001e-37 83.58 Protein RALF-like 33 OS=Arabidopsis thaliana OX=37... [more] RLF1_ARATH 4.443e-34 55.65 Protein RALF-like 1 OS=Arabidopsis thaliana OX=370... [more] RALF_TOBAC 5.784e-33 89.83 Rapid alkalinization factor OS=Nicotiana tabacum O... [more] RLF22_ARATH 1.209e-30 84.48 Protein RALF-like 22 OS=Arabidopsis thaliana OX=37... [more] RLF23_ARATH 1.244e-30 87.72 Rapid alkalinization factor 23 OS=Arabidopsis thal... [more] RLF19_ARATH 4.378e-20 60.66 Protein RALF-like 19 OS=Arabidopsis thaliana OX=37... [more] RLF4_ARATH 1.440e-18 56.92 Protein RALF-like 4 OS=Arabidopsis thaliana OX=370... [more] RLF31_ARATH 4.231e-18 41.90 Protein RALF-like 31 OS=Arabidopsis thaliana OX=37... [more] RLF24_ARATH 3.548e-15 62.50 Protein RALF-like 24 OS=Arabidopsis thaliana OX=37... [more] RLF34_ARATH 2.417e-9 40.95 Protein RALF-like 34 OS=Arabidopsis thaliana OX=37... [more]
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Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G089900.1_Pv_G19833_v2.1
>Phvul.006G089900.1_Pv_G19833_v2.1 ID=Phvul.006G089900.1_Pv_G19833_v2.1; Name=Phvul.006G089900.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=105bp back to top mRNA from alignment at Chr06:20133917..20134749-
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G089900.1_Pv_G19833_v2.1 ID=Phvul.006G089900.1_Pv_G19833_v2.1; Name=Phvul.006G089900.1; organism=Phaseolus vulgaris; type=mRNA; length=833bp; location=Sequence derived from: Chr06:20133917..20134749- (Phaseolus vulgarisCCTCGGTGCATTGAACTTCTCTCAAGAGTCAATGAATCACAAAATTTACA
AATATGTTTATTTTATTTTTCTTACGGGAATGGCAGGAATGTAAATAAAG
GGTAGTCGAGTGTCAATGTTGAACGCGAGGGTCTTTTAAACTGGTTGCTG
ATAATGCTGCCGTTACTCTGCAAAACCAAAGCAAGAAGGAAGAGACAGAG
AGAAGCATTGTTATCGTGAGCTCCTCGGAAGGTTCATTCATTCCATCAAC
GAAAACAAGGCGAACAATCTCAGCAAACGAAGAAACAAACATCA ATGGCA
AACTCGTGTTCGTGGCTCTTCCTGGCGATTTGCGCCACCGTTCTGGTCCT
ATCTGCGTCGCCGACAGCGGAGGCGGGAGCGCTGGGCATGGAAATGATGT
GGATGCCCTCCATGGATGAAGAGTTCCAGCTGGACAGCGAGATCAGCCGG
CGCATCTTAGCCACCACGAAGTACATAAGCTACGGTGCGCTCCAGAGGAA
CACTGTGCCCTGCTCTCGCCGCGGCGCCTCCTACTACAATTGCCAGCCTG
GCGCTCAGGCCAACCCCTACAGCCGTGGCTGCAGCGCCATCACCAGGTGC
AGAAGCTAA ATTATTATTCTCTTTTTTTTTTCCTTTTTTTTAATGTTTCG
TATTCGCGTTTCGTTGTACACATGGTGATGATATTCAATGTTTGTTTATT
ATTATGTATTGTCCTATTGCTGATAAATAATTAATGTGAATGTCACTCAT
TCATCATCATTTTATTGCTATTAATTACTATTTACTTCTTACATTCTTTA
GTTTTTCTATTTTTCATTTTTTACTTTCACTCG back to top Coding sequence (CDS) from alignment at Chr06:20133917..20134749-
>Phvul.006G089900.1_Pv_G19833_v2.1 ID=Phvul.006G089900.1_Pv_G19833_v2.1; Name=Phvul.006G089900.1; organism=Phaseolus vulgaris; type=CDS; length=315bp; location=Sequence derived from: Chr06:20133917..20134749- (Phaseolus vulgaris back to top
