rna-TanjilR_23545
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF51_ARATH (Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana OX=3702 GN=DOF5.1 PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.459e-39 Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 2 Query: 350 MRPGSMADRARLAKLPPPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC 562
+RPGSMA+RARLA +P PETALKCPRCDS NTKFCYFNNYSLTQPRHFCK CRRYWTRGGALR+VPVGGGC
Sbjct: 74 IRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGC 144
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF24_ARATH (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana OX=3702 GN=DOF2.4 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 2.226e-37 Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 2 Query: 350 MRPGSMADRARLAKLPPPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC 562
+R GSM DRAR A + PE ALKCPRC+S NTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC
Sbjct: 68 IRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC 138
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF36_ARATH (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana OX=3702 GN=DOF3.6 PE=1 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 1.261e-36 Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 2 Query: 302 PPQASLSGGGGATVGSMRPGSMADRARLAKLPPPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGG 559
PP + ++G A R SM +RAR+AK+P PE AL CPRCDS NTKFCYFNNYSLTQPRHFCKTCRRYWTRGG+LRNVPVGGG
Sbjct: 44 PPTSQVAGSSQA-----RVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGG 124
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF22_ARATH (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 5.690e-36 Identity = 136/316 (43.04%), Postives = 171/316 (54.11%), Query Frame = 2 Query: 254 HHQVNGNGSPQMLPPLPPQASLSGGGGATVG-SMRPGSMADRARLAK-LPPPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXAIPSGGTTHELIGHMTQPPNLPFMASLQNQMNRYGVANMAGLNLREIQGQT-----------DHMGFQIXXXXXXXXXXXXXXXXL--EQWRSQQFPFMNGFESTSVTSYPFQNENVEANSGFVGDIAASSRVYNQQPPVKMEENRALNLLR--SSMSNTVSENNQYYSWTDLSGLPSSTTASH 1150
HHQV + PQ P P + TV S G A+RARLAK PPE ALKCPRCDS NTKFCYFNNY+LTQPRHFCK CRRYWTRGGALRNVPVGGGCRRNKK K SKS SSS+ + +S +A T++ + +Q PF+ +LQN G+ GLNL I G + +GF G ++ G+ L S F F+ T + Y F N E N G + I A +RV +Q VKME+N N+ R S +++ +++NQY WT GLP S++ H
Sbjct: 41 HHQVLSHHFPQN--PNPNHHHVETAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQ---FPFLPTLQNLTQLGGI----GLNLAAINGNNGGNGNTSSSFLNDLGFFHGGNTSGPVMGNNNENNLMTSLGSSSHFAL---FDRT-MGLYNFPN---EVNMG-LSSIGA-TRV-SQTAQVKMEDNHLGNISRPVSGLTSPGNQSNQY--WTG-QGLPGSSSNDH 334
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 7.423e-35 Identity = 130/342 (38.01%), Postives = 161/342 (47.08%), Query Frame = 2 Query: 242 SNQNH-----HQVNGNGS---------PQMLPPL-----PPQASLSGGGGATVGSMRPGSMADRARLAKLPPPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXAIPSGG---TTHELIGHMTQPPNLPFMASLQNQMNRYGVANMAGLNLREIQGQT-----------DHMGFQ--------IXXXXXXXXXXXXXXXXLEQWRSQQFPFMNGFESTSVTSYPFQNE-NVEANSGFVGDIAA--SSRVYNQQPPVKMEENRALNLLRSSMSNTVSENNQY--YSW--TDLSG 1123
+N NH HQ+N NGS LPPL P ++ G + S GSMA+RAR A +PP LKCPRCDS NTKFCY+NNY+LTQPRHFCK CRRYWT+GGALRNVPVGGGCRRN K ++ + SSS + SS + PS G T H+ PF +L N G+ GLNL G +GF + + + L PF +T + ++ QN+ N+ N G G + SRVY Q PPVKMEE L L +S S NQ Y W +D SG
Sbjct: 3 TNSNHQHHLQHQLNENGSIISGHGLVLSHQLPPLQANPNPNHHHVATSAG--LPSRMGGSMAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKSSSSSSKQSSSVNAQSPSSGQLRTNHQ----------FPFSPTLYNLTQLGGI----GLNLAATNGNNQAHQIGSSLMMSDLGFLHGRNTSTPMTGNIHENNNNNNNENNLMASVGSLSPFALFDPTTGLYAF--QNDGNIGNNVGISGSSTSMVDSRVY-QTPPVKMEEQPNLANLSRPVSGLTSPGNQTNQYFWPGSDFSG 325
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.447e-29 Identity = 46/55 (83.64%), Postives = 52/55 (94.55%), Query Frame = 2 Query: 398 PPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC 562
PPE AL+CPRCDS NTKFCY+NNYSLTQPR+FCK+CRRYWT+GG LRN+PVGGGC
Sbjct: 50 PPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGC 104
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF4_ORYSJ (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.123e-27 Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 2 Query: 329 GGATVGSMR--PGSMADRARLAKLPPPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC 562
GGA +R +R +P PE A+KCPRC+S NTKFCY+NNY+L+QPRHFCK+CRRYWT+GG LRNVPVGGGC
Sbjct: 16 GGAAAADIRRAQAQQGPASRCGGIPSPE-AVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGC 94
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 7.751e-27 Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2 Query: 398 PPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGG 559
P + LKCPRCDS NTKFCY+NNY+L+QPRHFCK CRRYWT+GGALRN+PVGGG
Sbjct: 28 PEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGG 81
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF47_ARATH (Dof zinc finger protein DOF4.7 OS=Arabidopsis thaliana OX=3702 GN=DOF4.7 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.299e-26 Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 2 Query: 389 KLPPPET--ALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGG 556
K P P T LKCPRCDS+NTKFCY+NNYSL+QPRH+CK CRRYWTRGGALRNVP+GG
Sbjct: 31 KEPSPATQPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVPIGG 88
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Match: DOF57_ARATH (Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana OX=3702 GN=DOF5.7 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.498e-26 Identity = 44/50 (88.00%), Postives = 49/50 (98.00%), Query Frame = 2 Query: 413 LKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC 562
LKCPRC+S NTKFCY+NNYSL+QPRHFCK+CRRYWTRGGALRNVP+GGGC
Sbjct: 41 LKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGC 90 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23545 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23545_La_Tanjil_v1.0 ID=rna-TanjilR_23545_La_Tanjil_v1.0; Name=rna-TanjilR_23545; organism=Lupinus angustifolius; type=mRNA; length=1159bpback to top protein sequence of rna-TanjilR_23545_La_Tanjil_v1.0 >rna-TanjilR_23545_La_Tanjil_v1.0 ID=rna-TanjilR_23545_La_Tanjil_v1.0; Name=rna-TanjilR_23545_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=323bpback to top mRNA from alignment at Chr_LG08-CM007368.1:23992186..23993344+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_23545_La_Tanjil_v1.0 ID=rna-TanjilR_23545_La_Tanjil_v1.0; Name=rna-TanjilR_23545; organism=Lupinus angustifolius; type=mRNA; length=1159bp; location=Sequence derived from: Chr_LG08-CM007368.1:23992186..23993344+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:23992186..23993344+ >rna-TanjilR_23545_La_Tanjil_v1.0 ID=rna-TanjilR_23545_La_Tanjil_v1.0; Name=rna-TanjilR_23545; organism=Lupinus angustifolius; type=CDS; length=972bp; location=Sequence derived from: Chr_LG08-CM007368.1:23992186..23993344+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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