Transcript Overview
| Name | rna-TanjilR_23520 |
|---|
| Unique Name | rna-TanjilR_23520_La_Tanjil_v1.0 |
|---|
| Type | mRNA |
|---|
| Organism | Lupinus angustifolius (blue lupin) |
|---|
| Sequence length | 2305 |
|---|
| Product | hypothetical protein |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_23520 | rna-TanjilR_23520_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_23520_La_Tanjil_v1.0 | rna-TanjilR_23520_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_23520_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24148252..24150237 | rna-TanjilR_23520_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24148252..24150237 | Lupinus angustifolius | exon |
| rna-TanjilR_23520_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24150323..24150556 | rna-TanjilR_23520_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24150323..24150556 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_23520_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24148252..24150237 | rna-TanjilR_23520_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24148252..24150237 | Lupinus angustifolius | CDS |
| rna-TanjilR_23520_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24150323..24150556 | rna-TanjilR_23520_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24150323..24150556 | Lupinus angustifolius | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR021916 | Protein of unknown function DUF3527 | PFAM | PF12043 | DUF3527 | coord: 430..544
e-value: 4.6E-11
score: 42.9
coord: 581..705
e-value: 1.8E-38
score: 133.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 375..410 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 376..398 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 299..346 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 205..246 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 322..346 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 225..241 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23520_La_Tanjil_v1.0 ID=rna-TanjilR_23520_La_Tanjil_v1.0; Name=rna-TanjilR_23520; organism=Lupinus angustifolius; type=mRNA; length=2305bp
ATGTCAAATTTACCAGGTTACTTAGAGAGGGagaaaaagaatgagaagaT
TTTGAATGTTGGAGTTCTTGATTGGAAGCATCTAGAACAATGGAAGTACA
ACCATAAGCATGTTCCACATAGAAGTAGCACGAGTTCAACATATACTAGC
AACACATCCTCTTATGTTTCAGAAGAAAGGTTATCTGGTTATAGTTCTTG
CCCTTATGGTCAAAGGATACTCCGGCCATCCTTGAAATCTCACTTTATGG
CATCTCCAATTCAAGGCCACTCCGATGCTATCAAATCCTCTCGAGACAGT
GTTGGAAATTGTCAGAATTTTAGAGGCAGGCACAATGATATTGGCACACA
CAGCAAATATTTGGATGACAATCTTTTCCAGGAAGATCCTAATAGTAGAT
TAAAAGGATGTGATAAGAAATATTTGGATCCATATATTGATAAGGAACGT
GACAACATTCCAAATGACCGAATGCATTACGAAGCAGCATCATGTGCTAG
GCTGGGAAAAAGCACTCAAGATGGTGGAATGGAAGGAAGAGTGGATACTT
TGAGAGAACCAGATACTGATACAGTTTTGCGAAGAACCCTCAGCAAAAGC
AAGCCATTTGATCTTCGTTTGACTCGAGACAGTCCGAAGAACAATCATTA
TAGATTTCCTCATATGCCGAAATCCACAATTCAGAAGTCAGAAAATTCTA
GTCGATCGAGCTTTCCAGAAACACCTAAGGAACTTTCCCCTAAAGATTTC
AACTTTGATATTTCGCACTCCTGTCCTCTTCCGGTTGAACTTAGTTGTAA
CAATTTTCAGCTTAAAGGATCAGGCCAAAGTTCCACAGACCTGGAAAGCA
TCAAATTTTCTGCTTCTACTTTTTCATCACCCTTATCTACTACTTACTCA
GTCAAAATGGGAATAAGCCCTTCTAGATCAACAAAAGCTGAGGAAAGGAA
AGAAACCACAACCCGAACTACTTCTGCAAATTTGTCTCTCCAGGGATTAG
ACCAGAAAGTAACATCTGACAAGTCAAGAAGCTCTTCACCATTTCGGCGA
TTGAGCATTAGCATTGGTTATACAAGCAAAGGGCCTGCCTATAAAAGGGA
TGACCATGTGCCACATTTGAGCTCCATAGAAGCTCGTAAATCCAGTTCCA
AAAATGTAAGGGGCTATGCTAGCTCAAACATTTCAGCCAATGATAAACCT
GGTGATGCAGACAGAAAAAGGTCAAGCCCTTTAAGGAGGTTACTTGATCC
ATTGCTGAAACCAAAACCAAATGCCAAGAAGTATGTTCCATCAGTGACTC
GAGCTCTTCTGAAAATTGTCGTGAGGAATGACCTACCTCTTTTCACATTT
GCTGTTGATAATACCAGAGACGTTCTTGCAGCCACTGTGAAGAACTTAAG
TGCCATAGGAAACGATGAATGCCACAGTATTTATACCATTTTCACGTTTA
GAGAGGTTAAGAAGAAGAATAGAAGTTGGATTAATCAAGCAAACAGAAGC
AAAGGTCCTGATTACATTCCTCATGGTGTTGCCCAAATGAAGGTTTCTGA
TTCACACGATTATGATCTAGCCAGACAGAATTGTGCGGACTCGTCGACTA
CAAAAgagtttgttttgttttctgtAAATCTAAGGCAACGGAATGCTGAG
GCCATTGACTATCAGCCAAATGACGAGCTTGCTGCTATTGTTGTCAAAAT
ACCTAAAGCAATAAGTTGCATCAATAGCTGTCATCAGAGCAGTTTCCAGA
GCGATAGTCAAGACCCTATGCATGCAACAGTTTTGCTCCCAAGTGGAGTT
CATAGCCTTCCAAGTCAAGGTGGACCTTCATCGCTGATTGAACGGTGGAA
ATCAGGTGGGTCATGTGACTGTGGTGGTTGGGATTTGGCTTGCAAACTTC
AAGTTATTGCTACTGAAAATCAACCCGGCCAAAAACCAACATCATCCAAA
GCTTATTTAGCCAACCAACTAGAGCTTTTCATGCAGGTACTTTTTTGTTT
GGTTAAACTTATTTTTGTACTCATCATTGTTGATTATTAATTTTCCCTAT
CCTTTTCATTGCTAAACACAGGGGAATGATCAAGAGCAGCAATGCGCTTT
CAGTTTTACACAATTTAAGCACGGAATGTATTCAATAGCCTTCGATTCAT
CGCTCTCTATTTTGCAAGCTTTCTCTATTTGCATCGCCTTAGTGGATAGC
AAGACGCCAAATGACCTTTCTGGATCAATAAACTCCACAGAAGATAAAAA
CCAATGGGAAACACTATTAATGCAAGCTAAGGAAGTAGGAACTAAAGGCA
TTTAG back to topprotein sequence of rna-TanjilR_23520_La_Tanjil_v1.0 >rna-TanjilR_23520_La_Tanjil_v1.0 ID=rna-TanjilR_23520_La_Tanjil_v1.0; Name=rna-TanjilR_23520_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=739bp
MSNLPGYLEREKKNEKILNVGVLDWKHLEQWKYNHKHVPHRSSTSSTYTS
NTSSYVSEERLSGYSSCPYGQRILRPSLKSHFMASPIQGHSDAIKSSRDS
VGNCQNFRGRHNDIGTHSKYLDDNLFQEDPNSRLKGCDKKYLDPYIDKER
DNIPNDRMHYEAASCARLGKSTQDGGMEGRVDTLREPDTDTVLRRTLSKS
KPFDLRLTRDSPKNNHYRFPHMPKSTIQKSENSSRSSFPETPKELSPKDF
NFDISHSCPLPVELSCNNFQLKGSGQSSTDLESIKFSASTFSSPLSTTYS
VKMGISPSRSTKAEERKETTTRTTSANLSLQGLDQKVTSDKSRSSSPFRR
LSISIGYTSKGPAYKRDDHVPHLSSIEARKSSSKNVRGYASSNISANDKP
GDADRKRSSPLRRLLDPLLKPKPNAKKYVPSVTRALLKIVVRNDLPLFTF
AVDNTRDVLAATVKNLSAIGNDECHSIYTIFTFREVKKKNRSWINQANRS
KGPDYIPHGVAQMKVSDSHDYDLARQNCADSSTTKEFVLFSVNLRQRNAE
AIDYQPNDELAAIVVKIPKAISCINSCHQSSFQSDSQDPMHATVLLPSGV
HSLPSQGGPSSLIERWKSGGSCDCGGWDLACKLQVIATENQPGQKPTSSK
AYLANQLELFMQGNDQEQQCAFSFTQFKHGMYSIAFDSSLSILQAFSICI
ALVDSKTPNDLSGSINSTEDKNQWETLLMQAKEVGTKGI back to topmRNA from alignment at Chr_LG08-CM007368.1:24148252..24150556+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_23520_La_Tanjil_v1.0 ID=rna-TanjilR_23520_La_Tanjil_v1.0; Name=rna-TanjilR_23520; organism=Lupinus angustifolius; type=mRNA; length=2305bp; location=Sequence derived from: Chr_LG08-CM007368.1:24148252..24150556+ (Lupinus angustifolius
ATGTCAAATTTACCAGGTTACTTAGAGAGGGagaaaaagaatgagaagaT
TTTGAATGTTGGAGTTCTTGATTGGAAGCATCTAGAACAATGGAAGTACA
ACCATAAGCATGTTCCACATAGAAGTAGCACGAGTTCAACATATACTAGC
AACACATCCTCTTATGTTTCAGAAGAAAGGTTATCTGGTTATAGTTCTTG
CCCTTATGGTCAAAGGATACTCCGGCCATCCTTGAAATCTCACTTTATGG
CATCTCCAATTCAAGGCCACTCCGATGCTATCAAATCCTCTCGAGACAGT
GTTGGAAATTGTCAGAATTTTAGAGGCAGGCACAATGATATTGGCACACA
CAGCAAATATTTGGATGACAATCTTTTCCAGGAAGATCCTAATAGTAGAT
TAAAAGGATGTGATAAGAAATATTTGGATCCATATATTGATAAGGAACGT
GACAACATTCCAAATGACCGAATGCATTACGAAGCAGCATCATGTGCTAG
GCTGGGAAAAAGCACTCAAGATGGTGGAATGGAAGGAAGAGTGGATACTT
TGAGAGAACCAGATACTGATACAGTTTTGCGAAGAACCCTCAGCAAAAGC
AAGCCATTTGATCTTCGTTTGACTCGAGACAGTCCGAAGAACAATCATTA
TAGATTTCCTCATATGCCGAAATCCACAATTCAGAAGTCAGAAAATTCTA
GTCGATCGAGCTTTCCAGAAACACCTAAGGAACTTTCCCCTAAAGATTTC
AACTTTGATATTTCGCACTCCTGTCCTCTTCCGGTTGAACTTAGTTGTAA
CAATTTTCAGCTTAAAGGATCAGGCCAAAGTTCCACAGACCTGGAAAGCA
TCAAATTTTCTGCTTCTACTTTTTCATCACCCTTATCTACTACTTACTCA
GTCAAAATGGGAATAAGCCCTTCTAGATCAACAAAAGCTGAGGAAAGGAA
AGAAACCACAACCCGAACTACTTCTGCAAATTTGTCTCTCCAGGGATTAG
ACCAGAAAGTAACATCTGACAAGTCAAGAAGCTCTTCACCATTTCGGCGA
TTGAGCATTAGCATTGGTTATACAAGCAAAGGGCCTGCCTATAAAAGGGA
TGACCATGTGCCACATTTGAGCTCCATAGAAGCTCGTAAATCCAGTTCCA
AAAATGTAAGGGGCTATGCTAGCTCAAACATTTCAGCCAATGATAAACCT
GGTGATGCAGACAGAAAAAGGTCAAGCCCTTTAAGGAGGTTACTTGATCC
ATTGCTGAAACCAAAACCAAATGCCAAGAAGTATGTTCCATCAGTGACTC
GAGCTCTTCTGAAAATTGTCGTGAGGAATGACCTACCTCTTTTCACATTT
GCTGTTGATAATACCAGAGACGTTCTTGCAGCCACTGTGAAGAACTTAAG
TGCCATAGGAAACGATGAATGCCACAGTATTTATACCATTTTCACGTTTA
GAGAGGTTAAGAAGAAGAATAGAAGTTGGATTAATCAAGCAAACAGAAGC
AAAGGTCCTGATTACATTCCTCATGGTGTTGCCCAAATGAAGGTTTCTGA
TTCACACGATTATGATCTAGCCAGACAGAATTGTGCGGACTCGTCGACTA
CAAAAgagtttgttttgttttctgtAAATCTAAGGCAACGGAATGCTGAG
GCCATTGACTATCAGCCAAATGACGAGCTTGCTGCTATTGTTGTCAAAAT
ACCTAAAGCAATAAGTTGCATCAATAGCTGTCATCAGAGCAGTTTCCAGA
GCGATAGTCAAGACCCTATGCATGCAACAGTTTTGCTCCCAAGTGGAGTT
CATAGCCTTCCAAGTCAAGGTGGACCTTCATCGCTGATTGAACGGTGGAA
ATCAGGTGGGTCATGTGACTGTGGTGGTTGGGATTTGGCTTGCAAACTTC
AAGTTATTGCTACTGAAAATCAACCCGGCCAAAAACCAACATCATCCAAA
GCTTATTTAGCCAACCAACTAGAGCTTTTCATGCAGGTACTTTTTTGTTT
GGTTAAACTTATTTTTGTACTCATCATTGTTGATTATTAATTTTCCCTAT
CCTTTTCATTGCTAAACACAGGGGAATGATCAAGAGCAGCAATGCGCTTT
CAGTTTTACACAATTTAAGCACGGAATGTATTCAATAGCCTTCGATTCAT
CGCTCTCTATTTTGCAAGCTTTCTCTATTTGCATCGCCTTAGTGGATAGC
AAGACGCCAAATGACCTTTCTGGATCAATAAACTCCACAGAAGATAAAAA
CCAATGGGAAACACTATTAATGCAAGCTAAGGAAGTAGGAACTAAAGGCA
TTTAG back to topCoding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24148252..24150556+ >rna-TanjilR_23520_La_Tanjil_v1.0 ID=rna-TanjilR_23520_La_Tanjil_v1.0; Name=rna-TanjilR_23520; organism=Lupinus angustifolius; type=CDS; length=2220bp; location=Sequence derived from: Chr_LG08-CM007368.1:24148252..24150556+ (Lupinus angustifolius
ATGTCAAATTTACCAGGTTACTTAGAGAGGGagaaaaagaatgagaagaT
TTTGAATGTTGGAGTTCTTGATTGGAAGCATCTAGAACAATGGAAGTACA
ACCATAAGCATGTTCCACATAGAAGTAGCACGAGTTCAACATATACTAGC
AACACATCCTCTTATGTTTCAGAAGAAAGGTTATCTGGTTATAGTTCTTG
CCCTTATGGTCAAAGGATACTCCGGCCATCCTTGAAATCTCACTTTATGG
CATCTCCAATTCAAGGCCACTCCGATGCTATCAAATCCTCTCGAGACAGT
GTTGGAAATTGTCAGAATTTTAGAGGCAGGCACAATGATATTGGCACACA
CAGCAAATATTTGGATGACAATCTTTTCCAGGAAGATCCTAATAGTAGAT
TAAAAGGATGTGATAAGAAATATTTGGATCCATATATTGATAAGGAACGT
GACAACATTCCAAATGACCGAATGCATTACGAAGCAGCATCATGTGCTAG
GCTGGGAAAAAGCACTCAAGATGGTGGAATGGAAGGAAGAGTGGATACTT
TGAGAGAACCAGATACTGATACAGTTTTGCGAAGAACCCTCAGCAAAAGC
AAGCCATTTGATCTTCGTTTGACTCGAGACAGTCCGAAGAACAATCATTA
TAGATTTCCTCATATGCCGAAATCCACAATTCAGAAGTCAGAAAATTCTA
GTCGATCGAGCTTTCCAGAAACACCTAAGGAACTTTCCCCTAAAGATTTC
AACTTTGATATTTCGCACTCCTGTCCTCTTCCGGTTGAACTTAGTTGTAA
CAATTTTCAGCTTAAAGGATCAGGCCAAAGTTCCACAGACCTGGAAAGCA
TCAAATTTTCTGCTTCTACTTTTTCATCACCCTTATCTACTACTTACTCA
GTCAAAATGGGAATAAGCCCTTCTAGATCAACAAAAGCTGAGGAAAGGAA
AGAAACCACAACCCGAACTACTTCTGCAAATTTGTCTCTCCAGGGATTAG
ACCAGAAAGTAACATCTGACAAGTCAAGAAGCTCTTCACCATTTCGGCGA
TTGAGCATTAGCATTGGTTATACAAGCAAAGGGCCTGCCTATAAAAGGGA
TGACCATGTGCCACATTTGAGCTCCATAGAAGCTCGTAAATCCAGTTCCA
AAAATGTAAGGGGCTATGCTAGCTCAAACATTTCAGCCAATGATAAACCT
GGTGATGCAGACAGAAAAAGGTCAAGCCCTTTAAGGAGGTTACTTGATCC
ATTGCTGAAACCAAAACCAAATGCCAAGAAGTATGTTCCATCAGTGACTC
GAGCTCTTCTGAAAATTGTCGTGAGGAATGACCTACCTCTTTTCACATTT
GCTGTTGATAATACCAGAGACGTTCTTGCAGCCACTGTGAAGAACTTAAG
TGCCATAGGAAACGATGAATGCCACAGTATTTATACCATTTTCACGTTTA
GAGAGGTTAAGAAGAAGAATAGAAGTTGGATTAATCAAGCAAACAGAAGC
AAAGGTCCTGATTACATTCCTCATGGTGTTGCCCAAATGAAGGTTTCTGA
TTCACACGATTATGATCTAGCCAGACAGAATTGTGCGGACTCGTCGACTA
CAAAAgagtttgttttgttttctgtAAATCTAAGGCAACGGAATGCTGAG
GCCATTGACTATCAGCCAAATGACGAGCTTGCTGCTATTGTTGTCAAAAT
ACCTAAAGCAATAAGTTGCATCAATAGCTGTCATCAGAGCAGTTTCCAGA
GCGATAGTCAAGACCCTATGCATGCAACAGTTTTGCTCCCAAGTGGAGTT
CATAGCCTTCCAAGTCAAGGTGGACCTTCATCGCTGATTGAACGGTGGAA
ATCAGGTGGGTCATGTGACTGTGGTGGTTGGGATTTGGCTTGCAAACTTC
AAGTTATTGCTACTGAAAATCAACCCGGCCAAAAACCAACATCATCCAAA
GCTTATTTAGCCAACCAACTAGAGCTTTTCATGCAGGGGAATGATCAAGA
GCAGCAATGCGCTTTCAGTTTTACACAATTTAAGCACGGAATGTATTCAA
TAGCCTTCGATTCATCGCTCTCTATTTTGCAAGCTTTCTCTATTTGCATC
GCCTTAGTGGATAGCAAGACGCCAAATGACCTTTCTGGATCAATAAACTC
CACAGAAGATAAAAACCAATGGGAAACACTATTAATGCAAGCTAAGGAAG
TAGGAACTAAAGGCATTTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021916 | DUF3527 |
|
