rna-TanjilR_13876
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL4_ORYSJ (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0529100 PE=2 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 7.919e-54 Identity = 93/156 (59.62%), Postives = 118/156 (75.64%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALV-KGPSNGKLPIHL-VSPEGEIKWFLDKGAASRL 1372
VPIP+ Q+ I+DAL A+G AD YET L++LV+ VI S TGFP+FD+MLL MGPDG++A L+PG+P VNE +KWVT++K++PKPPPERITFT PVINS++ +AMVVTGAGKA AV AL K S+ LP+ + V +GE WF DK A S L
Sbjct: 166 VPIPTGQVYAINDALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENKKWVTYIKDSPKPPPERITFTFPVINSSAYVAMVVTGAGKAGAVQKALSDKQTSSDLLPVEMAVLQDGEFTWFTDKPAVSML 321 HSP 2 Score: 75.485 bits (184), Expect = 1.204e-13 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 3 Query: 465 CLCYNLRKLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
L N+RKL + PY D ++WSKWH+FW DE+VVP H DSNYK A DGF
Sbjct: 114 SLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGF 162
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL4_ORYSI (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_031067 PE=3 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 8.088e-54 Identity = 93/156 (59.62%), Postives = 118/156 (75.64%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALV-KGPSNGKLPIHL-VSPEGEIKWFLDKGAASRL 1372
VPIP+ Q+ I+DAL A+G AD YET L++LV+ VI S TGFP+FD+MLL MGPDG++A L+PG+P VNE +KWVT++K++PKPPPERITFT PVINS++ +AMVVTGAGKA AV AL K S+ LP+ + V +GE WF DK A S L
Sbjct: 166 VPIPTGQVYAINDALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENKKWVTYIKDSPKPPPERITFTFPVINSSAYVAMVVTGAGKAGAVQKALSDKQTSSDLLPVEMAVLQDGEFTWFTDKPAVSML 321 HSP 2 Score: 75.0998 bits (183), Expect = 1.395e-13 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 3 Query: 465 CLCYNLRKLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
L N+RKL + PY D ++WSKWH+FW DE+VVP H DSNYK A DGF
Sbjct: 114 SLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGF 162
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL3_ORYSJ (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0547100 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.626e-52 Identity = 91/156 (58.33%), Postives = 116/156 (74.36%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALV-KGPSNGKLPIHLVS-PEGEIKWFLDKGAASRL 1372
VPIP+ QI I+D L A+G AD YET L++LV V+ S TGFPK DLMLL MGPDG+VA L+PG+P VNE KWV+++K++PKPPPERITFT P++NS+++IA+VVTGAGKA AV+ A K S+ LP+ +VS EG + WF DK A S L
Sbjct: 169 VPIPASQIYAINDTLSAEGAADEYETCLKQLVNDGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVVNENLKWVSYIKDSPKPPPERITFTFPLVNSSAHIALVVTGAGKAGAVHKAFSDKQSSSDLLPVEMVSQQEGVLTWFTDKPAVSML 324 HSP 2 Score: 73.9442 bits (180), Expect = 3.844e-13 Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 3 Query: 465 CLCYNLRKLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
L LRKL +SPY + +EWSKWH+FW DE+VVP H DSNYK A DG
Sbjct: 117 SLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGL 165
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL3_ORYSI (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30141 PE=3 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 3.626e-52 Identity = 91/156 (58.33%), Postives = 116/156 (74.36%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALV-KGPSNGKLPIHLVS-PEGEIKWFLDKGAASRL 1372
VPIP+ QI I+D L A+G AD YET L++LV V+ S TGFPK DLMLL MGPDG+VA L+PG+P VNE KWV+++K++PKPPPERITFT P++NS+++IA+VVTGAGKA AV+ A K S+ LP+ +VS EG + WF DK A S L
Sbjct: 169 VPIPASQIYAINDTLSAEGAADEYETCLKQLVNDGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVVNENLKWVSYIKDSPKPPPERITFTFPLVNSSAHIALVVTGAGKAGAVHKAFSDKQSSSDLLPVEMVSQQEGVLTWFTDKPAVSML 324 HSP 2 Score: 73.9442 bits (180), Expect = 3.844e-13 Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 3 Query: 465 CLCYNLRKLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
L LRKL +SPY + +EWSKWH+FW DE+VVP H DSNYK A DG
Sbjct: 117 SLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGL 165
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL3_ARATH (6-phosphogluconolactonase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGL3 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.526e-46 Identity = 84/155 (54.19%), Postives = 111/155 (71.61%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALVKGPSNGKL-PIHLVSPEGEIKWFLDKGAASRL 1372
VPIP + I++AL A+ AD YET L+ LV ++ S TGFPKFDLMLL MGPDG+VA L+PG+ NE++KWV + ++PKPP ERITFT PVINS++++A+VV G+GKA+AV +AL K G + P VS E E+ WFLDK A+S+L
Sbjct: 174 VPIPPGNVYAINEALSAEAAADDYETCLKHLVNTNILRVSESTGFPKFDLMLLGMGPDGHVASLFPGHGLCNESKKWVVSISDSPKPPSERITFTFPVINSSAHVALVVCGSGKAEAVEAALKK---TGNVPPAGSVSAEDELVWFLDKPASSKL 325 HSP 2 Score: 73.1738 bits (178), Expect = 5.981e-13 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3 Query: 465 CLCYNLRKLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
L +LRKLV+SPY D I+W++WH FW DE+VVP H DSNYK AYD F
Sbjct: 122 SLIKSLRKLVESPYVDSIDWARWHFFWVDERVVPKNHDDSNYKLAYDSF 170
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL5_ARATH (Probable 6-phosphogluconolactonase 5 OS=Arabidopsis thaliana OX=3702 GN=PGL5 PE=2 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.472e-39 Identity = 75/158 (47.47%), Postives = 102/158 (64.56%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADG----VADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALVKGPSNGKLPIHLVSPEGEIKWFLDKGAASRL 1372
VPIP I ID L ADG A +YE L+ LV+ K+I S +TG+P+FDL LL MGPDG++A L+P +P++NE +KWVT++ ++PKPPP+RITFTLPVINS M + A +V A + +N LP +S + E W+LD+ AAS L
Sbjct: 97 VPIPDKNIYAIDKHLAADGNAEHCATLYEECLKNLVKEKIIPISKKTGYPEFDLQLLGMGPDGHMASLFPNHPQINEKQKWVTYITDSPKPPPKRITFTLPVINSTLYNLMAICDKAPAKSV--AEIMKHNNLSLPSAHLSAQVENVWYLDQAAASEL 252 HSP 2 Score: 57.7658 bits (138), Expect = 3.791e-8 Identity = 35/85 (41.18%), Postives = 41/85 (48.24%), Query Frame = 3 Query: 375 FPIFNATCYKVSICEALYSLLFGKVKQLLICLCYN------LRKLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
FP N ++ A S F K K L + L KLV PY D IEW KWH+FW DE+V DSNYK A +GF
Sbjct: 9 FPTKNELSEAMAEYTANLSAKFIKEKGLFTVVLSGGDLIDWLCKLVQPPYIDSIEWPKWHVFWVDERVCAWEDPDSNYKLAMEGF 93
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL2_ARATH (Probable 6-phosphogluconolactonase 2 OS=Arabidopsis thaliana OX=3702 GN=PGL2 PE=2 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 1.058e-37 Identity = 72/158 (45.57%), Postives = 103/158 (65.19%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADV----YETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSALVKGPSNGKLPIHLVSPEGEIKWFLDKGAASRL 1372
VP+P+ I ID+ L A+G A++ YE L++ V + +I T +GFP+FDL LL MGPDG++A L+PG+ ++NE KWVT + ++PKPP +RIT TLPVIN AS M V +AD+V +AL LP ++ + E+ WFLD+ AAS+L
Sbjct: 97 VPVPAENIYAIDNGLGAEGNAELAAERYEECLKQKVNQNIIRTYKSSGFPQFDLQLLGMGPDGHMASLFPGHAQINEKVKWVTSITDSPKPPSKRITLTLPVINCASYNVMAVCDKEQADSVAAAL---NHTKDLPAGRLTADVEVVWFLDQAAASKL 251 HSP 2 Score: 67.0106 bits (162), Expect = 3.191e-11 Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 3 Query: 486 KLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
KL+++PY D IEWSKWHIFW DE+V H DSNYK AYDGF
Sbjct: 52 KLLEAPYIDSIEWSKWHIFWVDERVCAWDHADSNYKLAYDGF 93
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL2_ORYSJ (Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0604000 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.351e-37 Identity = 75/159 (47.17%), Postives = 104/159 (65.41%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSAL---VKGPSN-GKLPIHLVSP-EGEIKWFLDKGAASRL 1372
VPI + + +I+D + A YE +R+LV+ + I S PKFDL+LL MG DG+VA L+P +P + W+T++ ++P+PPPERITFTLPVINSASNIA+V TG K++AV+ A+ GP LP +V P +G++ WFLDK AAS L
Sbjct: 108 VPILNGHVYSINDNATVEDAATDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYITDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQPTDGKLVWFLDKSAASSL 266
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL2_ORYSI (Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025867 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.351e-37 Identity = 75/159 (47.17%), Postives = 104/159 (65.41%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSAL---VKGPSN-GKLPIHLVSP-EGEIKWFLDKGAASRL 1372
VPI + + +I+D + A YE +R+LV+ + I S PKFDL+LL MG DG+VA L+P +P + W+T++ ++P+PPPERITFTLPVINSASNIA+V TG K++AV+ A+ GP LP +V P +G++ WFLDK AAS L
Sbjct: 108 VPILNGHVYSINDNATVEDAATDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYITDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQPTDGKLVWFLDKSAASSL 266
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Match: 6PGL1_ORYSI (Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_011697 PE=3 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 1.578e-37 Identity = 74/158 (46.84%), Postives = 104/158 (65.82%), Query Frame = 2 Query: 911 VPIPSHQINTIDDALPADGVADVYETSLRRLVERKVITTSSETGFPKFDLMLLDMGPDGNVADLYPGYPEVNETRKWVTFLKNAPKPPPERITFTLPVINSASNIAMVVTGAGKADAVYSAL---VKGPSNGKLPIHLVSP-EGEIKWFLDKGAASRL 1372
VPI + + +I+D + + A YE +R+LV+ + + S PKFDL+LL +G DG+VA L+P +P + WVT++ ++P PPPERITFTLPVINSASNIA+V TG KA AVY A+ +GP +P +V P +G++ WFLDK +AS L
Sbjct: 125 VPILNGHVYSINDNVTVEDAATDYEFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDSPVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGAEGPDAPSIPARMVQPTDGKLVWFLDKASASFL 282 HSP 2 Score: 54.6842 bits (130), Expect = 6.564e-7 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 3 Query: 480 LRKLVDSPYYDQIEWSKWHIFWADEKVVPITHVDSNYKHAYDGF 611
+RKL ++PY ++WSKW+IFWADE+ V HVDS YK + F
Sbjct: 78 MRKLCEAPYNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDF 121 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13876 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13876_La_Tanjil_v1.0 ID=rna-TanjilR_13876_La_Tanjil_v1.0; Name=rna-TanjilR_13876; organism=Lupinus angustifolius; type=mRNA; length=1381bpback to top protein sequence of rna-TanjilR_13876_La_Tanjil_v1.0 >rna-TanjilR_13876_La_Tanjil_v1.0 ID=rna-TanjilR_13876_La_Tanjil_v1.0; Name=rna-TanjilR_13876_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=293bpback to top mRNA from alignment at Chr_LG09-CM007369.1:18032944..18034324- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13876_La_Tanjil_v1.0 ID=rna-TanjilR_13876_La_Tanjil_v1.0; Name=rna-TanjilR_13876; organism=Lupinus angustifolius; type=mRNA; length=1381bp; location=Sequence derived from: Chr_LG09-CM007369.1:18032944..18034324- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18032944..18034324- >rna-TanjilR_13876_La_Tanjil_v1.0 ID=rna-TanjilR_13876_La_Tanjil_v1.0; Name=rna-TanjilR_13876; organism=Lupinus angustifolius; type=CDS; length=882bp; location=Sequence derived from: Chr_LG09-CM007369.1:18032944..18034324- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|