rna-TanjilR_24183

Transcript Overview
Namerna-TanjilR_24183
Unique Namerna-TanjilR_24183_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length446
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG09-CM007369.1supercontigChr_LG09-CM007369.1:18223046..18223491 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL183Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL284Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL310Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL467Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccR1546Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1176Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1205Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1212Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anpsR0994Pisum sativum Cameor genome v1aPisum sativum
anpsR1019Pisum sativum Cameor genome v1aPisum sativum
anpsR1028Pisum sativum Cameor genome v1aPisum sativum
anpvR1404Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1419Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1204Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1209Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1330Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1352Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1133Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1164Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1199Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1185Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1216Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1202Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1153Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1162Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1158Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1163Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1322Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1360Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1064Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1095Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1102Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1300Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1323Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1141Cicer arietinum
ancarR1156Cicer arietinum
ancarR1164Cicer arietinum
anccaR1149Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1162Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1323Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1327Vigna umbellata FF25 genome v1.0Vigna umbellata
anvasR1323Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1317Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1327Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1321Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1165Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1172Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1448Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1463Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.008G165800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan07g218300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_03G01409.1Vigna umbellata FF25 genome v1.0Vigna umbellata
PvulFLAVERTChr08.1039Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.03G202200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun08g091900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat2g079320.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_11616.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Tiffany.R1.1g161640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g207560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg532.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.03G127900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.model.Chr08.1940Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014648376.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va07G055630.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat02G0242000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_01853Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_24183gene-TanjilG_24183_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24183rna-TanjilR_24183_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_24183_La_Tanjil_v1.0rna-TanjilR_24183_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054Lupinus angustifoliusexon
rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333Lupinus angustifoliusexon
rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054Lupinus angustifoliusCDS
rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333Lupinus angustifoliusCDS
rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24183 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183; organism=Lupinus angustifolius; type=mRNA; length=446bp
ATGTTTTCGGTAatgttaatgtttttttattcctATTGTGGAAAACTGGA
AATTATGAGCAATCTATTGCAATCAAATTGATAATTTCCTCATGCTGTTT
TCATTCCTAGATGGAAAAGTCCGATGCCTACAGGAAAGGTGCTGCTTCTA
GTAAGAAATTCGATGGCGGTGCTCCTGGAGGAGGTcctggtggtggtgga
gggcCATATGGTGGTGGTCCACGGGGCCCTCCTTGCGGTGGTCTTGACAA
TGTTCGTGGACTAGATAGTATTAGGGGACGTGACCATAGTAAGTTTAGAT
TTTCTACATTGCTTTCAATTTTCAGTGATTCAGCTTTCCCTTTTGCTTTT
CTAGTTTTTCTTTGCTAATCATATACTCTTTTGGGATGTTTTTCTTCCAT
TGAACTTCCAGGTTCACTACCTGCTTGTGGCTCCTGCTGTGGCTGA
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protein sequence of rna-TanjilR_24183_La_Tanjil_v1.0

>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=73bp
MFSMEKSDAYRKGAASSKKFDGGAPGGGPGGGGGPYGGGPRGPPCGGLDN
VRGLDSIRGRDHSSLPACGSCCG
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mRNA from alignment at Chr_LG09-CM007369.1:18223046..18223491+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183; organism=Lupinus angustifolius; type=mRNA; length=446bp; location=Sequence derived from: Chr_LG09-CM007369.1:18223046..18223491+ (Lupinus angustifolius
ATGTTTTCGGTAatgttaatgtttttttattcctATTGTGGAAAACTGGA
AATTATGAGCAATCTATTGCAATCAAATTGATAATTTCCTCATGCTGTTT
TCATTCCTAGATGGAAAAGTCCGATGCCTACAGGAAAGGTGCTGCTTCTA
GTAAGAAATTCGATGGCGGTGCTCCTGGAGGAGGTcctggtggtggtgga
gggcCATATGGTGGTGGTCCACGGGGCCCTCCTTGCGGTGGTCTTGACAA
TGTTCGTGGACTAGATAGTATTAGGGGACGTGACCATAGTAAGTTTAGAT
TTTCTACATTGCTTTCAATTTTCAGTGATTCAGCTTTCCCTTTTGCTTTT
CTAGTTTTTCTTTGCTAATCATATACTCTTTTGGGATGTTTTTCTTCCAT
TGAACTTCCAGGTTCACTACCTGCTTGTGGCTCCTGCTGTGGCTGA
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Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18223046..18223491+

>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183; organism=Lupinus angustifolius; type=CDS; length=222bp; location=Sequence derived from: Chr_LG09-CM007369.1:18223046..18223491+ (Lupinus angustifolius
ATGTTTTCGATGGAAAAGTCCGATGCCTACAGGAAAGGTGCTGCTTCTAG
TAAGAAATTCGATGGCGGTGCTCCTGGAGGAGGTcctggtggtggtggag
ggcCATATGGTGGTGGTCCACGGGGCCCTCCTTGCGGTGGTCTTGACAAT
GTTCGTGGACTAGATAGTATTAGGGGACGTGACCATAGTTCACTACCTGC
TTGTGGCTCCTGCTGTGGCTGA
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