rna-TanjilR_24183

Transcript Overview


Name	rna-TanjilR_24183
Unique Name	rna-TanjilR_24183_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	446
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG09-CM007369.1	supercontig	Chr_LG09-CM007369.1:18223046..18223491 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL183	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL284	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL310	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL467	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccR1546	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR1176	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1205	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1212	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anpsR0994	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR1019	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR1028	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1404	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1419	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1204	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1209	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1330	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR1352	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1133	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1164	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvfhR1199	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1185	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1216	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1202	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvrvR1153	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR1162	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1158	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR1163	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR1322	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1360	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR1064	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1095	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1102	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1300	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1323	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1141		Cicer arietinum
ancarR1156		Cicer arietinum
ancarR1164		Cicer arietinum
anccaR1149	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1162	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1323	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1327	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvasR1323	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1317	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1327	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1321	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR1165	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR1172	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1448	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1463	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Phvul.008G165800.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
LR48_mrnaVigan07g218300	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vum_03G01409.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
PvulFLAVERTChr08.1039	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigan.03G202200.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vigun08g091900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Psat2g079320.1	Pisum sativum Cameor genome v1a	Pisum sativum
Cc_v2.0_11616.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vfaba.Tiffany.R1.1g161640.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vfaba.Hedin2.R1.1g207560.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
jg532.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigst.03G127900.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
evm.model.Chr08.1940	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-XM_014648376.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Va07G055630.2	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Psat02G0242000-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_01853	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_24183	gene-TanjilG_24183_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_24183	rna-TanjilR_24183_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_24183_La_Tanjil_v1.0	rna-TanjilR_24183_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054	rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054	Lupinus angustifolius	exon
rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333	rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333	Lupinus angustifolius	exon
rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491	rna-TanjilR_24183_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054	rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223046..18223054	Lupinus angustifolius	CDS
rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333	rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223156..18223333	Lupinus angustifolius	CDS
rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491	rna-TanjilR_24183_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18223457..18223491	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_24183 vs.

BLAST of rna-TanjilR_24183 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG09-CM007369.1:18223046..18223491+
coding sequence from alignment at Chr_LG09-CM007369.1:18223046..18223491+

mRNA sequence

>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183; organism=Lupinus angustifolius; type=mRNA; length=446bp
ATGTTTTCGGTAatgttaatgtttttttattcctATTGTGGAAAACTGGA
AATTATGAGCAATCTATTGCAATCAAATTGATAATTTCCTCATGCTGTTT
TCATTCCTAGATGGAAAAGTCCGATGCCTACAGGAAAGGTGCTGCTTCTA
GTAAGAAATTCGATGGCGGTGCTCCTGGAGGAGGTcctggtggtggtgga
gggcCATATGGTGGTGGTCCACGGGGCCCTCCTTGCGGTGGTCTTGACAA
TGTTCGTGGACTAGATAGTATTAGGGGACGTGACCATAGTAAGTTTAGAT
TTTCTACATTGCTTTCAATTTTCAGTGATTCAGCTTTCCCTTTTGCTTTT
CTAGTTTTTCTTTGCTAATCATATACTCTTTTGGGATGTTTTTCTTCCAT
TGAACTTCCAGGTTCACTACCTGCTTGTGGCTCCTGCTGTGGCTGA

protein sequence of rna-TanjilR_24183_La_Tanjil_v1.0

>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=73bp
MFSMEKSDAYRKGAASSKKFDGGAPGGGPGGGGGPYGGGPRGPPCGGLDN
VRGLDSIRGRDHSSLPACGSCCG

mRNA from alignment at Chr_LG09-CM007369.1:18223046..18223491+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183; organism=Lupinus angustifolius; type=mRNA; length=446bp; location=Sequence derived from: Chr_LG09-CM007369.1:18223046..18223491+ (Lupinus angustifolius
ATGTTTTCGGTAatgttaatgtttttttattcctATTGTGGAAAACTGGA
AATTATGAGCAATCTATTGCAATCAAATTGATAATTTCCTCATGCTGTTT
TCATTCCTAGATGGAAAAGTCCGATGCCTACAGGAAAGGTGCTGCTTCTA
GTAAGAAATTCGATGGCGGTGCTCCTGGAGGAGGTcctggtggtggtgga
gggcCATATGGTGGTGGTCCACGGGGCCCTCCTTGCGGTGGTCTTGACAA
TGTTCGTGGACTAGATAGTATTAGGGGACGTGACCATAGTAAGTTTAGAT
TTTCTACATTGCTTTCAATTTTCAGTGATTCAGCTTTCCCTTTTGCTTTT
CTAGTTTTTCTTTGCTAATCATATACTCTTTTGGGATGTTTTTCTTCCAT
TGAACTTCCAGGTTCACTACCTGCTTGTGGCTCCTGCTGTGGCTGA

Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18223046..18223491+

>rna-TanjilR_24183_La_Tanjil_v1.0 ID=rna-TanjilR_24183_La_Tanjil_v1.0; Name=rna-TanjilR_24183; organism=Lupinus angustifolius; type=CDS; length=222bp; location=Sequence derived from: Chr_LG09-CM007369.1:18223046..18223491+ (Lupinus angustifolius
ATGTTTTCGATGGAAAAGTCCGATGCCTACAGGAAAGGTGCTGCTTCTAG
TAAGAAATTCGATGGCGGTGCTCCTGGAGGAGGTcctggtggtggtggag
ggcCATATGGTGGTGGTCCACGGGGCCCTCCTTGCGGTGGTCTTGACAAT
GTTCGTGGACTAGATAGTATTAGGGGACGTGACCATAGTTCACTACCTGC
TTGTGGCTCCTGCTGTGGCTGA

Search form

rna-TanjilR_24183