Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_01652 rna-TanjilR_01652_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide
rna-TanjilR_01652_La_Tanjil_v1.0 rna-TanjilR_01652_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350242..18350528 rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350242..18350528 Lupinus angustifolius exon
rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350709..18350822 rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350709..18350822 Lupinus angustifolius exon
rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350904..18351063 rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350904..18351063 Lupinus angustifolius exon
rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18351192..18351353 rna-TanjilR_01652_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18351192..18351353 Lupinus angustifolius exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350242..18350528 rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350242..18350528 Lupinus angustifolius CDS
rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350709..18350822 rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350709..18350822 Lupinus angustifolius CDS
rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350904..18351063 rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18350904..18351063 Lupinus angustifolius CDS
rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18351192..18351353 rna-TanjilR_01652_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18351192..18351353 Lupinus angustifolius CDS
Homology
BLAST of rna-TanjilR_01652 vs. DB:Swiss
Match:
EAR1_ORYSI (Protein terminal ear1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=PLA2 PE=2 SV=1)
HSP 1 Score: 62.7734 bits (151), Expect = 3.580e-13
Identity = 40/122 (32.79%), Postives = 52/122 (42.62%), Query Frame = 1
Query: 478 LLKILDEHCFELNKNAE-----NVAAYSKFDFLYLPMDFRLKF*EPFFPLIYSDLSNNHLFGSYYIRKHAIEKKLSNLGYAFVNFTSPSAAFKFYMRFNGFVWNVTTNRKTCEINAAQYQVL 828
LL +LD HC N+ E +S +DFLYLP+DF NN N+GY FVN TSP AA + Y F+ W V +RK C++ A+ Q L
Sbjct: 471 LLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDF-----------------NNKC----------------NVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGL 559 HSP 2 Score: 33.8834 bits (76), Expect = 3.580e-13
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 3
Query: 948 QGVEALIRKFREKVFRCKRSDFLPFVFWEHRDG 1046
QG++AL F+ F C ++LP VF RDG
Sbjct: 557 QGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDG 589
BLAST of rna-TanjilR_01652 vs. DB:Swiss
Match:
EAR1_ORYSJ (Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=PLA2 PE=2 SV=1)
HSP 1 Score: 62.7734 bits (151), Expect = 3.699e-13
Identity = 40/122 (32.79%), Postives = 52/122 (42.62%), Query Frame = 1
Query: 478 LLKILDEHCFELNKNAE-----NVAAYSKFDFLYLPMDFRLKF*EPFFPLIYSDLSNNHLFGSYYIRKHAIEKKLSNLGYAFVNFTSPSAAFKFYMRFNGFVWNVTTNRKTCEINAAQYQVL 828
LL +LD HC N+ E +S +DFLYLP+DF NN N+GY FVN TSP AA + Y F+ W V +RK C++ A+ Q L
Sbjct: 474 LLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDF-----------------NNKC----------------NVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGL 562 HSP 2 Score: 33.8834 bits (76), Expect = 3.699e-13
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 3
Query: 948 QGVEALIRKFREKVFRCKRSDFLPFVFWEHRDG 1046
QG++AL F+ F C ++LP VF RDG
Sbjct: 560 QGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDG 592
BLAST of rna-TanjilR_01652 vs. DB:Swiss
Match:
TE1_MAIZE (Protein terminal ear1 OS=Zea mays OX=4577 GN=TE1 PE=2 SV=1)
HSP 1 Score: 59.3066 bits (142), Expect = 3.521e-12
Identity = 37/120 (30.83%), Postives = 52/120 (43.33%), Query Frame = 1
Query: 478 LLKILDEHCFELNK---NAENVAAYSKFDFLYLPMDFRLKF*EPFFPLIYSDLSNNHLFGSYYIRKHAIEKKLSNLGYAFVNFTSPSAAFKFYMRFNGFVWNVTTNRKTCEINAAQYQVL 828
LL +LD HC + N+ + +S +DF+YLP+DF NN N+GY FVN TSP A + Y F+ W V +RK C++ A+ Q L
Sbjct: 457 LLNMLDNHCIQSNEWIVASGEEQPFSAYDFVYLPIDF-----------------NNKC----------------NVGYGFVNLTSPEARVRLYKAFHKQPWEVYNSRKICQVTYARVQGL 543 HSP 2 Score: 33.8834 bits (76), Expect = 3.521e-12
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 3
Query: 948 QGVEALIRKFREKVFRCKRSDFLPFVFWEHRDG 1046
QG+EAL F+ F C ++LP F RDG
Sbjct: 541 QGLEALKEHFKNSKFPCDSDEYLPVAFSPARDG 573
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01652 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 3
100 200 300 400 500 600 700 800 900 1000 1100 Expect = 3.58e-13 / Id = 32.79 Expect = 3.58e-13 / Id = 32.79 Expect = 3.70e-13 / Id = 32.79 Expect = 3.70e-13 / Id = 32.79 Expect = 3.52e-12 / Id = 30.83 Expect = 3.52e-12 / Id = 30.83 Sequence EAR1_ORYSI EAR1_ORYSJ TE1_MAIZE
Match Name E-value Identity Description
EAR1_ORYSI 3.580e-13 32.79 Protein terminal ear1 homolog OS=Oryza sativa subs... [more]
EAR1_ORYSJ 3.699e-13 32.79 Protein terminal ear1 homolog OS=Oryza sativa subs... [more]
TE1_MAIZE 3.521e-12 30.83 Protein terminal ear1 OS=Zea mays OX=4577 GN=TE1 P... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_01652_La_Tanjil_v1.0 ID=rna-TanjilR_01652_La_Tanjil_v1.0; Name=rna-TanjilR_01652; organism=Lupinus angustifolius; type=mRNA; length=1112bp ATGGCAACTCGCCCTCTTAACCCTAACGCTCAACCGTTTTACCCTCCCAA TACACTTCATAACCAACATGTTTCTGCTGAATCTACCAACCAAAATATAA CGAGGAGTGGAAGGAATAGGGCTAAGTATGAATGGAGGATGAAGGGAACA AGACCAACAACAAGCAAGGGAAAACTTCCATATAATGATGGTTGTGCAAC TCGTGGAAATGTGATTCCATTTCCTACAACCATTGAGAAATCCAGCATAA CCACTGTTATGATTCGTAATATCCCTAATCAGTTCACGTAACCAcacact ctctctctctaacCCTCCTTTCATATGCTTTGACATCTTTGTTTTCAATA ATGCCACATTAGTCTTACATTCGTGCATGATATACCATTAGTATGTGTCA TGTGACTATGTGAGATTTTGCTTAGTAAAGTTCTGAACATGGCTTATCTA CTCTTCATAATTCTTAGGTTCTGTGATTTGTTGAAAATACTAGATGAGCA CTGTTTCGAGCTAAACAAGAACGCTGAAAATGTTGCTGCTTATTCCAAGT TCGATTTCCTCTATTTGCCTATGGACTTCAGGTTGAAATTTTAGGAACCA TTTTTTCCTTTGATTTACTCTGATTTGtctaataatcatttatttggTTC ATATTATATCAGAAAACATGCGATAGAGAAAAAGTTATCCAATTTGGGAT ATGCCTTTGTGAACTTCACCTCTCCCTCTGCTGCATTTAAATTCTATATG CGATTTAATGGTTTTGTTTGGAACGTCACCACAAACCGCAAAACATGTGA GATAAACGCAGCACAATATCAGGTTTTGCTCCCATATCATGTACTTGTTC ATAATTTTTCCTAACATTGTCATCAAAAAATGTGGTTCACATAACTTCCG TTTTCCCAATTTTATCTCCTTTGATTCTGTTATTGGTGTGAAATAATCAG GGTGTAGAGGCTTTGATACGAAAATTCCGTGAAAAAGTATTCCGTTGCAA GCGAAGTGATTTTCTTCCTTTCGTGTTCTGGGAACATCGTGACGGATTCA ATTCCCAAGTGGTGGGAACCACCGTGGGAAAACATATCTGGGGTTTGCCT CGAAGAACCTGA back to top protein sequence of rna-TanjilR_01652_La_Tanjil_v1.0
>rna-TanjilR_01652_La_Tanjil_v1.0 ID=rna-TanjilR_01652_La_Tanjil_v1.0; Name=rna-TanjilR_01652_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=240bp MATRPLNPNAQPFYPPNTLHNQHVSAESTNQNITRSGRNRAKYEWRMKGT RPTTSKGKLPYNDGCATRGNVIPFPTTIEKSSITTVMIRNIPNQFTFCDL LKILDEHCFELNKNAENVAAYSKFDFLYLPMDFRKHAIEKKLSNLGYAFV NFTSPSAAFKFYMRFNGFVWNVTTNRKTCEINAAQYQGVEALIRKFREKV FRCKRSDFLPFVFWEHRDGFNSQVVGTTVGKHIWGLPRRT back to top mRNA from alignment at Chr_LG09-CM007369.1:18350242..18351353+
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01652_La_Tanjil_v1.0 ID=rna-TanjilR_01652_La_Tanjil_v1.0; Name=rna-TanjilR_01652; organism=Lupinus angustifolius; type=mRNA; length=1112bp; location=Sequence derived from: Chr_LG09-CM007369.1:18350242..18351353+ (Lupinus angustifoliusATGGCAACTCGCCCTCTTAACCCTAACGCTCAACCGTTTTACCCTCCCAA
TACACTTCATAACCAACATGTTTCTGCTGAATCTACCAACCAAAATATAA
CGAGGAGTGGAAGGAATAGGGCTAAGTATGAATGGAGGATGAAGGGAACA
AGACCAACAACAAGCAAGGGAAAACTTCCATATAATGATGGTTGTGCAAC
TCGTGGAAATGTGATTCCATTTCCTACAACCATTGAGAAATCCAGCATAA
CCACTGTTATGATTCGTAATATCCCTAATCAGTTCAC GTAACCAcacact
ctctctctctaacCCTCCTTTCATATGCTTTGACATCTTTGTTTTCAATA
ATGCCACATTAGTCTTACATTCGTGCATGATATACCATTAGTATGTGTCA
TGTGACTATGTGAGATTTTGCTTAGTAAAGTTCTGAACATGGCTTATCTA
CTCTTCATAATTCTTAGGTTCTGTGATTTGTTGAAAATACTAGATGAGCA
CTGTTTCGAGCTAAACAAGAACGCTGAAAATGTTGCTGCTTATTCCAAGT
TCGATTTCCTCTATTTGCCTATGGACTTCAG GTTGAAATTTTAGGAACCA
TTTTTTCCTTTGATTTACTCTGATTTGtctaataatcatttatttggTTC
ATATTATATCAGAAAACATGCGATAGAGAAAAAGTTATCCAATTTGGGAT
ATGCCTTTGTGAACTTCACCTCTCCCTCTGCTGCATTTAAATTCTATATG
CGATTTAATGGTTTTGTTTGGAACGTCACCACAAACCGCAAAACATGTGA
GATAAACGCAGCACAATATCAG GTTTTGCTCCCATATCATGTACTTGTTC
ATAATTTTTCCTAACATTGTCATCAAAAAATGTGGTTCACATAACTTCCG
TTTTCCCAATTTTATCTCCTTTGATTCTGTTATTGGTGTGAAATAATCAG
GGTGTAGAGGCTTTGATACGAAAATTCCGTGAAAAAGTATTCCGTTGCAA
GCGAAGTGATTTTCTTCCTTTCGTGTTCTGGGAACATCGTGACGGATTCA
ATTCCCAAGTGGTGGGAACCACCGTGGGAAAACATATCTGGGGTTTGCCT
CGAAGAACCTGA back to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18350242..18351353+
>rna-TanjilR_01652_La_Tanjil_v1.0 ID=rna-TanjilR_01652_La_Tanjil_v1.0; Name=rna-TanjilR_01652; organism=Lupinus angustifolius; type=CDS; length=723bp; location=Sequence derived from: Chr_LG09-CM007369.1:18350242..18351353+ (Lupinus angustifolius ATGGCAACTCGCCCTCTTAACCCTAACGCTCAACCGTTTTACCCTCCCAA TACACTTCATAACCAACATGTTTCTGCTGAATCTACCAACCAAAATATAA CGAGGAGTGGAAGGAATAGGGCTAAGTATGAATGGAGGATGAAGGGAACA AGACCAACAACAAGCAAGGGAAAACTTCCATATAATGATGGTTGTGCAAC TCGTGGAAATGTGATTCCATTTCCTACAACCATTGAGAAATCCAGCATAA CCACTGTTATGATTCGTAATATCCCTAATCAGTTCACGTTCTGTGATTTG TTGAAAATACTAGATGAGCACTGTTTCGAGCTAAACAAGAACGCTGAAAA TGTTGCTGCTTATTCCAAGTTCGATTTCCTCTATTTGCCTATGGACTTCA GAAAACATGCGATAGAGAAAAAGTTATCCAATTTGGGATATGCCTTTGTG AACTTCACCTCTCCCTCTGCTGCATTTAAATTCTATATGCGATTTAATGG TTTTGTTTGGAACGTCACCACAAACCGCAAAACATGTGAGATAAACGCAG CACAATATCAGGGTGTAGAGGCTTTGATACGAAAATTCCGTGAAAAAGTA TTCCGTTGCAAGCGAAGTGATTTTCTTCCTTTCGTGTTCTGGGAACATCG TGACGGATTCAATTCCCAAGTGGTGGGAACCACCGTGGGAAAACATATCT GGGGTTTGCCTCGAAGAACCTGA back to top