rna-TanjilR_06531

Transcript Overview
Namerna-TanjilR_06531
Unique Namerna-TanjilR_06531_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1267
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:3608019..3609285 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR246Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0307Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0316Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0337Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0263Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0268Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0297Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0299Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0339Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0364Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0333Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0357Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0255Pisum sativum Cameor genome v1aPisum sativum
anpsR0270Pisum sativum Cameor genome v1aPisum sativum
anpvR0322Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0331Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0274Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0290Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0298Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0305Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0343Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0350Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0281Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0298Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0308Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0261Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0262Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0301Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0303Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0277Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0242Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0289Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0258Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0319Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0321Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0266Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancarR0264Cicer arietinum
ancarR0295Cicer arietinum
anccaR0238Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0256Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0284Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0322Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0324Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0340Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0284Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0301Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0311Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0292Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0289Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0317Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0319Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0316Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0318Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0335Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0334Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0243Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0320Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0326Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0331Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0262Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0339Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
jg5646.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014637938.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058873579.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_004507160.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan08g111800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_06G00915.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat07G0521400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigst.06G134300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun11g109400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.6g006360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_19019Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr11.1068Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.6g008680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.06G138200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_09723.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_022472Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.011G112050.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_17276.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
PvulFLAVERTChr11.688Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun11g109400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_11727Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_06531gene-TanjilG_06531_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06531rna-TanjilR_06531_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_06531_La_Tanjil_v1.0rna-TanjilR_06531_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285Lupinus angustifoliusCDS
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607Lupinus angustifoliusCDS
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391Lupinus angustifoliusCDS
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285Lupinus angustifoliusexon
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607Lupinus angustifoliusexon
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391Lupinus angustifoliusexon
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06531 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531; organism=Lupinus angustifolius; type=mRNA; length=1267bp
ATGGCTTCTCTAGCTCGTCGTGCCGTATCTCTTACCCGTCTTTCTATTTC
CAAATCCCCGATTCAATCTCCCAACCTCGTCCACCGCCGCAACCTCGCCG
GAGCCGCAGGTATTTTCTTAATCCATTTATTCATTCGCGATCCCATTCAC
TGTTCCATCAAGATCTCTTAAATCAAACACTTCCACGAAATCGTATTCGA
TATTATCCCTTTCACAATAATTGAAATCGAAAGCCTCCAACTTTTCGCCC
CCTTTCTATTCGGTGCCTTTAGTTTTTTTGTGAAAACCTAACAATCTGTA
GGTTATTTAGGTTTTGTGTGGATCTGTTAGGAAATATGTGATTGGAAGCG
GTTTCTGTGGAAAATGAAATTGAGATTTAAAGTTATAATTTTTGAAATAT
TATCTGGAAATAAACAAGGGGAATAAGGTATTTGGGATGAAAGTAGAATT
CAGTGTTTATAAATGTAAGTAATATTGGGTTATATTTTGACAGTGCAACA
ATGACTTTGGTTAATGTTGCTCGTGTTACATGGTTTCATAAACCGAAGGC
AACATTATTTAATCAATAGATGTTTGGTCTTTATATACTTTGAAGAAACA
TAATTTGTGTGCTGTAGGTTTTTATTTACTACACGATTGTGGTTTATTTG
AAATGGAGTTATCTTTTGATTATTGCAGATCACCATGGTCCCCCTAAAGT
TAACTTTTGGACAGACCCAACGAGCCCATCTAAATGGAAGGAAGAGCATG
TGAGTATATTGTTTTGTTCGAAGAGCGACTGAACCCAATTTGAATTATTA
ATTTTTACTATGCGATGTTTGGAACTGAATCATTCATTTTGGAAATGGCA
AATGTGTGTGAATATTGTTTTGATTGCTTGCTTTGTGATTGCAGTTTGTA
ATTGTCTCTTTAAGTGGATGGGGACTACTCTTCTATGGGGGATACAAGTT
GTTCGCAGGAGGCAACGACAAGAAAGAAGAGGTACTTTCAATTTTTGATT
TAACTATTACAACTAAGAATGCAATTTATGGTTTGTAGCCACAATCAGGA
GAATTTCTTTCTCCTCCTCTACCATTATAACATATTTTAATGGTGTTTAG
GTCATAGCTGTGTACTACACAATATACTTGTAGTTGTTGGAGAAATTTCT
GCATACAGAAATGGACTAACTATAGTTTAACATCTCCAGGATTATGTTTT
GGGTTCTTGTTGAACACTTATGCTACTGTAGGTCTGTAGCAATTTTAATT
TCAGACCTAGGATATGA
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protein sequence of rna-TanjilR_06531_La_Tanjil_v1.0

>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=100bp
MASLARRAVSLTRLSISKSPIQSPNLVHRRNLAGAADHHGPPKVNFWTDP
TSPSKWKEEHFVIVSLSGWGLLFYGGYKLFAGGNDKKEEVCSNFNFRPRI
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mRNA from alignment at Chr_LG13-CM007373.1:3608019..3609285-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531; organism=Lupinus angustifolius; type=mRNA; length=1267bp; location=Sequence derived from: Chr_LG13-CM007373.1:3608019..3609285- (Lupinus angustifolius
ATGGCTTCTCTAGCTCGTCGTGCCGTATCTCTTACCCGTCTTTCTATTTC
CAAATCCCCGATTCAATCTCCCAACCTCGTCCACCGCCGCAACCTCGCCG
GAGCCGCAGGTATTTTCTTAATCCATTTATTCATTCGCGATCCCATTCAC
TGTTCCATCAAGATCTCTTAAATCAAACACTTCCACGAAATCGTATTCGA
TATTATCCCTTTCACAATAATTGAAATCGAAAGCCTCCAACTTTTCGCCC
CCTTTCTATTCGGTGCCTTTAGTTTTTTTGTGAAAACCTAACAATCTGTA
GGTTATTTAGGTTTTGTGTGGATCTGTTAGGAAATATGTGATTGGAAGCG
GTTTCTGTGGAAAATGAAATTGAGATTTAAAGTTATAATTTTTGAAATAT
TATCTGGAAATAAACAAGGGGAATAAGGTATTTGGGATGAAAGTAGAATT
CAGTGTTTATAAATGTAAGTAATATTGGGTTATATTTTGACAGTGCAACA
ATGACTTTGGTTAATGTTGCTCGTGTTACATGGTTTCATAAACCGAAGGC
AACATTATTTAATCAATAGATGTTTGGTCTTTATATACTTTGAAGAAACA
TAATTTGTGTGCTGTAGGTTTTTATTTACTACACGATTGTGGTTTATTTG
AAATGGAGTTATCTTTTGATTATTGCAGATCACCATGGTCCCCCTAAAGT
TAACTTTTGGACAGACCCAACGAGCCCATCTAAATGGAAGGAAGAGCATG
TGAGTATATTGTTTTGTTCGAAGAGCGACTGAACCCAATTTGAATTATTA
ATTTTTACTATGCGATGTTTGGAACTGAATCATTCATTTTGGAAATGGCA
AATGTGTGTGAATATTGTTTTGATTGCTTGCTTTGTGATTGCAGTTTGTA
ATTGTCTCTTTAAGTGGATGGGGACTACTCTTCTATGGGGGATACAAGTT
GTTCGCAGGAGGCAACGACAAGAAAGAAGAGGTACTTTCAATTTTTGATT
TAACTATTACAACTAAGAATGCAATTTATGGTTTGTAGCCACAATCAGGA
GAATTTCTTTCTCCTCCTCTACCATTATAACATATTTTAATGGTGTTTAG
GTCATAGCTGTGTACTACACAATATACTTGTAGTTGTTGGAGAAATTTCT
GCATACAGAAATGGACTAACTATAGTTTAACATCTCCAGGATTATGTTTT
GGGTTCTTGTTGAACACTTATGCTACTGTAGGTCTGTAGCAATTTTAATT
TCAGACCTAGGATATGA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3608019..3609285-

>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531; organism=Lupinus angustifolius; type=CDS; length=303bp; location=Sequence derived from: Chr_LG13-CM007373.1:3608019..3609285- (Lupinus angustifolius
ATGGCTTCTCTAGCTCGTCGTGCCGTATCTCTTACCCGTCTTTCTATTTC
CAAATCCCCGATTCAATCTCCCAACCTCGTCCACCGCCGCAACCTCGCCG
GAGCCGCAGATCACCATGGTCCCCCTAAAGTTAACTTTTGGACAGACCCA
ACGAGCCCATCTAAATGGAAGGAAGAGCATTTTGTAATTGTCTCTTTAAG
TGGATGGGGACTACTCTTCTATGGGGGATACAAGTTGTTCGCAGGAGGCA
ACGACAAGAAAGAAGAGGTCTGTAGCAATTTTAATTTCAGACCTAGGATA
TGA
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