rna-TanjilR_06531

Transcript Overview


Name	rna-TanjilR_06531
Unique Name	rna-TanjilR_06531_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	1267
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG13-CM007373.1	supercontig	Chr_LG13-CM007373.1:3608019..3609285 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananR246	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR250	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0307	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0316	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0337	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0263	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0268	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0297	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0299	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0339	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0364	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0333	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0357	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0255	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0270	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0322	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0331	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0258	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0274	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0290	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0298	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0305	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0343	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0350	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0281	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0298	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0308	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0261	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0262	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR0301	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0303	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0277	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0242	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0289	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0258	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0319	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0321	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0237	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0266	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancarR0264		Cicer arietinum
ancarR0295		Cicer arietinum
anccaR0238	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0256	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0284	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0322	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0324	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0340	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0284	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0301	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0311	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0292	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0289	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0317	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR0319	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0316	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR0318	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0335	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0334	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0243	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0320	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0326	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0331	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0262	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0339	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
jg5646.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-XM_014637938.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
XM_058873579.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-XM_004507160.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
LR48_mrnaVigan08g111800	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vum_06G00915.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Psat07G0521400-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vigst.06G134300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vigun11g109400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vfaba.Tiffany.R1.6g006360.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Ca_19019	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
evm.model.Chr11.1068	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.6g008680.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigan.06G138200.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Cc_v2.0_09723.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
rna-KK1_022472	Cajanus cajan Asha genome v1.0	Cajanus cajan
Phvul.011G112050.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Cr_17276.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
PvulFLAVERTChr11.688	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigun11g109400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_11727	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_06531	gene-TanjilG_06531_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_06531	rna-TanjilR_06531_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_06531_La_Tanjil_v1.0	rna-TanjilR_06531_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285	rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285	Lupinus angustifolius	CDS
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607	rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607	Lupinus angustifolius	CDS
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391	rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391	Lupinus angustifolius	CDS
rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054	rna-TanjilR_06531_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285	rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3609177..3609285	Lupinus angustifolius	exon
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607	rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608537..3608607	Lupinus angustifolius	exon
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391	rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608305..3608391	Lupinus angustifolius	exon
rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054	rna-TanjilR_06531_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3608019..3608054	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_06531 vs.

BLAST of rna-TanjilR_06531 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

Zoom :

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Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG13-CM007373.1:3608019..3609285-
coding sequence from alignment at Chr_LG13-CM007373.1:3608019..3609285-

mRNA sequence

>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531; organism=Lupinus angustifolius; type=mRNA; length=1267bp
ATGGCTTCTCTAGCTCGTCGTGCCGTATCTCTTACCCGTCTTTCTATTTC
CAAATCCCCGATTCAATCTCCCAACCTCGTCCACCGCCGCAACCTCGCCG
GAGCCGCAGGTATTTTCTTAATCCATTTATTCATTCGCGATCCCATTCAC
TGTTCCATCAAGATCTCTTAAATCAAACACTTCCACGAAATCGTATTCGA
TATTATCCCTTTCACAATAATTGAAATCGAAAGCCTCCAACTTTTCGCCC
CCTTTCTATTCGGTGCCTTTAGTTTTTTTGTGAAAACCTAACAATCTGTA
GGTTATTTAGGTTTTGTGTGGATCTGTTAGGAAATATGTGATTGGAAGCG
GTTTCTGTGGAAAATGAAATTGAGATTTAAAGTTATAATTTTTGAAATAT
TATCTGGAAATAAACAAGGGGAATAAGGTATTTGGGATGAAAGTAGAATT
CAGTGTTTATAAATGTAAGTAATATTGGGTTATATTTTGACAGTGCAACA
ATGACTTTGGTTAATGTTGCTCGTGTTACATGGTTTCATAAACCGAAGGC
AACATTATTTAATCAATAGATGTTTGGTCTTTATATACTTTGAAGAAACA
TAATTTGTGTGCTGTAGGTTTTTATTTACTACACGATTGTGGTTTATTTG
AAATGGAGTTATCTTTTGATTATTGCAGATCACCATGGTCCCCCTAAAGT
TAACTTTTGGACAGACCCAACGAGCCCATCTAAATGGAAGGAAGAGCATG
TGAGTATATTGTTTTGTTCGAAGAGCGACTGAACCCAATTTGAATTATTA
ATTTTTACTATGCGATGTTTGGAACTGAATCATTCATTTTGGAAATGGCA
AATGTGTGTGAATATTGTTTTGATTGCTTGCTTTGTGATTGCAGTTTGTA
ATTGTCTCTTTAAGTGGATGGGGACTACTCTTCTATGGGGGATACAAGTT
GTTCGCAGGAGGCAACGACAAGAAAGAAGAGGTACTTTCAATTTTTGATT
TAACTATTACAACTAAGAATGCAATTTATGGTTTGTAGCCACAATCAGGA
GAATTTCTTTCTCCTCCTCTACCATTATAACATATTTTAATGGTGTTTAG
GTCATAGCTGTGTACTACACAATATACTTGTAGTTGTTGGAGAAATTTCT
GCATACAGAAATGGACTAACTATAGTTTAACATCTCCAGGATTATGTTTT
GGGTTCTTGTTGAACACTTATGCTACTGTAGGTCTGTAGCAATTTTAATT
TCAGACCTAGGATATGA

protein sequence of rna-TanjilR_06531_La_Tanjil_v1.0

>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=100bp
MASLARRAVSLTRLSISKSPIQSPNLVHRRNLAGAADHHGPPKVNFWTDP
TSPSKWKEEHFVIVSLSGWGLLFYGGYKLFAGGNDKKEEVCSNFNFRPRI

mRNA from alignment at Chr_LG13-CM007373.1:3608019..3609285-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531; organism=Lupinus angustifolius; type=mRNA; length=1267bp; location=Sequence derived from: Chr_LG13-CM007373.1:3608019..3609285- (Lupinus angustifolius
ATGGCTTCTCTAGCTCGTCGTGCCGTATCTCTTACCCGTCTTTCTATTTC
CAAATCCCCGATTCAATCTCCCAACCTCGTCCACCGCCGCAACCTCGCCG
GAGCCGCAGGTATTTTCTTAATCCATTTATTCATTCGCGATCCCATTCAC
TGTTCCATCAAGATCTCTTAAATCAAACACTTCCACGAAATCGTATTCGA
TATTATCCCTTTCACAATAATTGAAATCGAAAGCCTCCAACTTTTCGCCC
CCTTTCTATTCGGTGCCTTTAGTTTTTTTGTGAAAACCTAACAATCTGTA
GGTTATTTAGGTTTTGTGTGGATCTGTTAGGAAATATGTGATTGGAAGCG
GTTTCTGTGGAAAATGAAATTGAGATTTAAAGTTATAATTTTTGAAATAT
TATCTGGAAATAAACAAGGGGAATAAGGTATTTGGGATGAAAGTAGAATT
CAGTGTTTATAAATGTAAGTAATATTGGGTTATATTTTGACAGTGCAACA
ATGACTTTGGTTAATGTTGCTCGTGTTACATGGTTTCATAAACCGAAGGC
AACATTATTTAATCAATAGATGTTTGGTCTTTATATACTTTGAAGAAACA
TAATTTGTGTGCTGTAGGTTTTTATTTACTACACGATTGTGGTTTATTTG
AAATGGAGTTATCTTTTGATTATTGCAGATCACCATGGTCCCCCTAAAGT
TAACTTTTGGACAGACCCAACGAGCCCATCTAAATGGAAGGAAGAGCATG
TGAGTATATTGTTTTGTTCGAAGAGCGACTGAACCCAATTTGAATTATTA
ATTTTTACTATGCGATGTTTGGAACTGAATCATTCATTTTGGAAATGGCA
AATGTGTGTGAATATTGTTTTGATTGCTTGCTTTGTGATTGCAGTTTGTA
ATTGTCTCTTTAAGTGGATGGGGACTACTCTTCTATGGGGGATACAAGTT
GTTCGCAGGAGGCAACGACAAGAAAGAAGAGGTACTTTCAATTTTTGATT
TAACTATTACAACTAAGAATGCAATTTATGGTTTGTAGCCACAATCAGGA
GAATTTCTTTCTCCTCCTCTACCATTATAACATATTTTAATGGTGTTTAG
GTCATAGCTGTGTACTACACAATATACTTGTAGTTGTTGGAGAAATTTCT
GCATACAGAAATGGACTAACTATAGTTTAACATCTCCAGGATTATGTTTT
GGGTTCTTGTTGAACACTTATGCTACTGTAGGTCTGTAGCAATTTTAATT
TCAGACCTAGGATATGA

Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3608019..3609285-

>rna-TanjilR_06531_La_Tanjil_v1.0 ID=rna-TanjilR_06531_La_Tanjil_v1.0; Name=rna-TanjilR_06531; organism=Lupinus angustifolius; type=CDS; length=303bp; location=Sequence derived from: Chr_LG13-CM007373.1:3608019..3609285- (Lupinus angustifolius
ATGGCTTCTCTAGCTCGTCGTGCCGTATCTCTTACCCGTCTTTCTATTTC
CAAATCCCCGATTCAATCTCCCAACCTCGTCCACCGCCGCAACCTCGCCG
GAGCCGCAGATCACCATGGTCCCCCTAAAGTTAACTTTTGGACAGACCCA
ACGAGCCCATCTAAATGGAAGGAAGAGCATTTTGTAATTGTCTCTTTAAG
TGGATGGGGACTACTCTTCTATGGGGGATACAAGTTGTTCGCAGGAGGCA
ACGACAAGAAAGAAGAGGTCTGTAGCAATTTTAATTTCAGACCTAGGATA
TGA

Search form

rna-TanjilR_06531