Homology
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
MIP1B_ARATH (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)
HSP 1 Score: 60.4622 bits (145), Expect = 2.507e-11
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 10 KCELCKGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPT 162
+CELC G A +FCE+D A LC CD VH ANFL RH R +LC +C T
Sbjct: 30 RCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
MIP1A_ARATH (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)
HSP 1 Score: 54.299 bits (129), Expect = 6.606e-9
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query: 13 CELCKGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPT 162
CELC A ++CE+D A LC CD VH+ANFL RH R ++C C T
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLT 81
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
BBX32_ARATH (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1)
HSP 1 Score: 54.6842 bits (130), Expect = 2.060e-8
Identity = 29/63 (46.03%), Postives = 35/63 (55.56%), Query Frame = 1
Query: 1 MNKKCELCKGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPTPWNASGARL 189
M CELC A + C +D A LC CD + HA+NFL ARH R ++C C S T SG L
Sbjct: 1 MVSFCELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGPLL 63
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
COL11_ARATH (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2)
HSP 1 Score: 55.0694 bits (131), Expect = 2.322e-8
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1
Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACH-SPTPWNASGARLGNTISFCHRC 219
M +C+ C A I+C+SD A LC +CD VH+AN L RH+R+LLC C PT + + +S C C
Sbjct: 1 MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC----MNENVSLCQGC 71
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana OX=3702 GN=COL12 PE=1 SV=2)
HSP 1 Score: 55.0694 bits (131), Expect = 2.745e-8
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 1
Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPTPWNASGAR-LGNTISFCHRCAAEE 231
M KC+ C A I+C+SD A LC +CD VH+AN L RH R+L+C C S + R L +S+C C E
Sbjct: 1 MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFS----QPAAIRCLDEKVSYCQGCHWHE 75
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana OX=3702 GN=At1g68190 PE=2 SV=1)
HSP 1 Score: 53.1434 bits (126), Expect = 1.055e-7
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 1 MNKKCELCKGP-ARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRAC 150
M + CE CK A ++C +D A LC CD +VH+AN L RH RT+LC +C
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSC 60
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1)
HSP 1 Score: 53.1434 bits (126), Expect = 1.160e-7
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 1
Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHS-PTPWNASGARLGNTISFCHRC 219
M C+ C + + ++C SD A LC CD VH+AN L RHSRTL+C C++ P S R +S C C
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDER----VSLCQNC 71
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1)
HSP 1 Score: 52.373 bits (124), Expect = 2.315e-7
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 7 KKCELCKGPA-RIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPTPWNASGARL--GNTISFCHRCAAEEETA 240
+ C+ C+ A ++CE+D A LC CD +VHAAN + +RH R +C++C S A A L + S C C AE +A
Sbjct: 14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCES-----APAAFLCKADAASLCTACDAEIHSA 89
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana OX=3702 GN=COL9 PE=1 SV=1)
HSP 1 Score: 51.6026 bits (122), Expect = 3.954e-7
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHS 156
M C+ C + + ++C SD A LC CD VH+AN L RHSRTL+C C++
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNA 53
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match:
COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)
HSP 1 Score: 51.2174 bits (121), Expect = 5.912e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query: 4 NKKCELCK-GPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRAC 150
+K C+ CK A ++C D A LC CD++VHAAN L +RH+R +C C
Sbjct: 3 SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVC 52
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 10
50 100 150 200 250 300 350 400 450 Expect = 2.51e-11 / Id = 54.90 Expect = 6.61e-9 / Id = 50.00 Expect = 2.06e-8 / Id = 46.03 Expect = 2.32e-8 / Id = 40.00 Expect = 2.75e-8 / Id = 40.51 Expect = 1.05e-7 / Id = 49.02 Expect = 1.16e-7 / Id = 40.00 Expect = 2.31e-7 / Id = 38.27 Expect = 3.95e-7 / Id = 45.28 Expect = 5.91e-7 / Id = 46.00 Sequence MIP1B_ARATH MIP1A_ARATH BBX32_ARATH COL11_ARATH COL12_ARATH COLX_ARATH COL10_ARATH COL2_ARATH COL9_ARATH COL4_ARATH
Match Name E-value Identity Description
MIP1B_ARATH 2.507e-11 54.90 B-box domain protein 31 OS=Arabidopsis thaliana OX... [more] MIP1A_ARATH 6.606e-9 50.00 B-box domain protein 30 OS=Arabidopsis thaliana OX... [more] BBX32_ARATH 2.060e-8 46.03 B-box zinc finger protein 32 OS=Arabidopsis thalia... [more] COL11_ARATH 2.322e-8 40.00 Putative zinc finger protein CONSTANS-LIKE 11 OS=A... [more] COL12_ARATH 2.745e-8 40.51 Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsi... [more] COLX_ARATH 1.055e-7 49.02 Putative zinc finger protein At1g68190 OS=Arabidop... [more] COL10_ARATH 1.160e-7 40.00 Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more] COL2_ARATH 2.315e-7 38.27 Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more] COL9_ARATH 3.954e-7 45.28 Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis... [more] COL4_ARATH 5.912e-7 46.00 Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525; organism=Lupinus angustifolius; type=mRNA; length=465bp back to top protein sequence of rna-TanjilR_06525_La_Tanjil_v1.0
>rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bp back to top mRNA from alignment at Chr_LG13-CM007373.1:3649820..3650284-
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525; organism=Lupinus angustifolius; type=mRNA; length=465bp; location=Sequence derived from: Chr_LG13-CM007373.1:3649820..3650284- (Lupinus angustifoliusATGAATAAGAAATGCGAGCTTTGCAAGGGTCCGGCGAGGATCTTCTGCGA
GTCAGACCAGGCAACTTTATGCTGGGACTGCGACACTCAGGTCCATGCCG
CCAATTTCTTAGTCGCTAGGCACTCCAGAACCCTTCTCTGCCGCGCTTGC
CACTCTCCTACGCCGTGGAACGCCTCCGGCGCTAGGCTCGGAAACACCAT
CTCATTCTGCCACCGTTGCGCCGCCGAAGAAGAAACTGCAGAGAATGACG
TAGGTAATGACGGTGCGGTAATGATTCCTGGTGACAACGACGGTGATATT
CAGTTTGTCCCTTCGTCCTCGACGCCACCTCCGCCACCAGCGAGTTCCGT
CGAGGCTGTTAGTGACGGCGATGATGAAGACAAATCTGAACCAGTAACTA
CAACAACCACGTTGATACAAGAGCGTGAGAATAACAACGTTCCAGATCGT
GATTTTCAGGTTTAA back to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3649820..3650284-
>rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG13-CM007373.1:3649820..3650284- (Lupinus angustifolius back to top
