rna-TanjilR_06525
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: MIP1B_ARATH (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.507e-11 Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1 Query: 10 KCELCKGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPT 162
+CELC G A +FCE+D A LC CD VH ANFL RH R +LC +C T
Sbjct: 30 RCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: MIP1A_ARATH (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 6.606e-9 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1 Query: 13 CELCKGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPT 162
CELC A ++CE+D A LC CD VH+ANFL RH R ++C C T
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLT 81
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: BBX32_ARATH (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 2.060e-8 Identity = 29/63 (46.03%), Postives = 35/63 (55.56%), Query Frame = 1 Query: 1 MNKKCELCKGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPTPWNASGARL 189
M CELC A + C +D A LC CD + HA+NFL ARH R ++C C S T SG L
Sbjct: 1 MVSFCELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGPLL 63
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: COL11_ARATH (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 2.322e-8 Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1 Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACH-SPTPWNASGARLGNTISFCHRC 219
M +C+ C A I+C+SD A LC +CD VH+AN L RH+R+LLC C PT + + +S C C
Sbjct: 1 MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC----MNENVSLCQGC 71
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana OX=3702 GN=COL12 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 2.745e-8 Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 1 Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPTPWNASGAR-LGNTISFCHRCAAEE 231
M KC+ C A I+C+SD A LC +CD VH+AN L RH R+L+C C S + R L +S+C C E
Sbjct: 1 MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFS----QPAAIRCLDEKVSYCQGCHWHE 75
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana OX=3702 GN=At1g68190 PE=2 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 1.055e-7 Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1 Query: 1 MNKKCELCKGP-ARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRAC 150
M + CE CK A ++C +D A LC CD +VH+AN L RH RT+LC +C
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSC 60
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 1.160e-7 Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 1 Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHS-PTPWNASGARLGNTISFCHRC 219
M C+ C + + ++C SD A LC CD VH+AN L RHSRTL+C C++ P S R +S C C
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDER----VSLCQNC 71
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.315e-7 Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 Query: 7 KKCELCKGPA-RIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHSPTPWNASGARL--GNTISFCHRCAAEEETA 240
+ C+ C+ A ++CE+D A LC CD +VHAAN + +RH R +C++C S A A L + S C C AE +A
Sbjct: 14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCES-----APAAFLCKADAASLCTACDAEIHSA 89
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana OX=3702 GN=COL9 PE=1 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.954e-7 Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 1 MNKKCELC-KGPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRACHS 156
M C+ C + + ++C SD A LC CD VH+AN L RHSRTL+C C++
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNA 53
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2) HSP 1 Score: 51.2174 bits (121), Expect = 5.912e-7 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1 Query: 4 NKKCELCK-GPARIFCESDQATLCWDCDTQVHAANFLVARHSRTLLCRAC 150
+K C+ CK A ++C D A LC CD++VHAAN L +RH+R +C C
Sbjct: 3 SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVC 52 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06525 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525; organism=Lupinus angustifolius; type=mRNA; length=465bpback to top protein sequence of rna-TanjilR_06525_La_Tanjil_v1.0 >rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3649820..3650284- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525; organism=Lupinus angustifolius; type=mRNA; length=465bp; location=Sequence derived from: Chr_LG13-CM007373.1:3649820..3650284- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3649820..3650284- >rna-TanjilR_06525_La_Tanjil_v1.0 ID=rna-TanjilR_06525_La_Tanjil_v1.0; Name=rna-TanjilR_06525; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG13-CM007373.1:3649820..3650284- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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