rna-TanjilR_06523

Transcript Overview
Namerna-TanjilR_06523
Unique Namerna-TanjilR_06523_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length842
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:3662628..3663469 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL074Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR238Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR246Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0312Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0316Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0263Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0268Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0333Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0357Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0255Pisum sativum Cameor genome v1aPisum sativum
anpsR0270Pisum sativum Cameor genome v1aPisum sativum
anpvR0322Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0331Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0274Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0292Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0298Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0305Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0343Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0281Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0261Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0262Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0301Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0303Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0277Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0295Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0242Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0289Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0258Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0319Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0283Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0294Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0300Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0324Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0264Cicer arietinum
ancarR0295Cicer arietinum
anccaR0238Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0256Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0284Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0322Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0324Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0340Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0284Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0301Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0292Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0289Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0317Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0319Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0316Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0318Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0335Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0334Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0243Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0320Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0326Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0331Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0262Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0339Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vum_01G01149.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun05g224100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.1g055160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun11g113800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_11478.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_02628.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
evm.model.Chr05.2148Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan08g126300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.6g011720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.07G066300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_00206Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
PvulFLAVERTChr02.1001276Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
LR48_mrnaVigan09g254600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
PvulFLAVERTChr05.747Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.01G106500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_07G00710.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004487308.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_05G00234.1Vigna umbellata FF25 genome v1.0Vigna umbellata
XM_058878864.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Va08G054560.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat5g265880.1Pisum sativum Cameor genome v1aPisum sativum
Vigan.05G030400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
XM_058923987.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigan.06G145000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_23884.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
jg43974.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va09G061720.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg5571.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.07G088000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
PvulFLAVERTChr11.1000680Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_06G00957.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan05g157300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun05g224100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat05G0740500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr11.1111Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.005G112300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.6g008320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigst.05G023400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_14140Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun11g113800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_09684.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.01G139000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va01G021410.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Va05G045390.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014643160.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr06.2129Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Tiffany.R1.1g037000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigst.06G137900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_03087Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_30290Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_06523gene-TanjilG_06523_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06523rna-TanjilR_06523_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_06523_La_Tanjil_v1.0rna-TanjilR_06523_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469Lupinus angustifoliusCDS
rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243Lupinus angustifoliusCDS
rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469Lupinus angustifoliusexon
rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243Lupinus angustifoliusexon
rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06523 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Modifying wall lignin-1/2PFAMPF06749DUF1218coord: 58..145
e-value: 2.5E-17
score: 63.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523; organism=Lupinus angustifolius; type=mRNA; length=842bp
ATGGCTAGAGTAGTAGGCATTTTCCTGTGTCTCCTGGTTGTAATAATGGA
TGTTGCTGCTGGGATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGG
TATGCTTGAAGCTGACTTTACTTTTTGAAATGCATTTAAGAAATATGTAT
ACAAGCCTACATGGACATCTTTAATGCAGTGGAATTTATATTAAAGTGAA
GTAGTTGATATTTTTTTAACAAACAGGTTAAGCATTTAAGACTATGGATA
TTTGAGTGTAGAGAGCCAAGTCATCAAGCCTTCATGCTTGGGTTGGGTGC
AACAGTACTTTTTGCACTAGCACATGCTATAGCCAACTTTCTTGGTTTCT
GCAGTTGCATTTGTTCTCAACAAGAGTTTGAGAAAGCTTCCTCTAATATG
CAAATCTCAGTGGTTTTCCTTATTTTAACTTGGTAATGTATCTCTGCCTC
TACTACTGGTTTGCATTTAGAAGAACTTATCTGGGTTTATGAGAACAATC
CATGAAACTATTTTATAATATTCTTATAAGCTCTTCTTCTCTCATTTCAA
TATGCTTATCATAAAAACCATTTCTTTGTTGCTTACTTTAAAAGAGGTTA
TTAAATAAACACTTAATCAAGCTTTCTGTCATTCTTTTTCTGATCTCATT
TTGGTTGTGCTGTTAATCAGGGTGGTTTCGGCCATTGGAATGTCCGCGCT
AGTGATTGGAATTATGTCAAACAACAAATCAGATGGTTCATGTGGTTTCA
CACATCATCATTTTCTGTCCATTGGTGGGATTTTGTGTTTTGTACATGGT
CTACTTTGTGTTGCATATTGCTTCTGCCACTGCCTCTGTTGA
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protein sequence of rna-TanjilR_06523_La_Tanjil_v1.0

>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=158bp
MARVVGIFLCLLVVIMDVAAGILGFEAEIAQNKVKHLRLWIFECREPSHQ
AFMLGLGATVLFALAHAIANFLGFCSCICSQQEFEKASSNMQISVVFLIL
TWVVSAIGMSALVIGIMSNNKSDGSCGFTHHHFLSIGGILCFVHGLLCVA
YCFCHCLC
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mRNA from alignment at Chr_LG13-CM007373.1:3662628..3663469-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523; organism=Lupinus angustifolius; type=mRNA; length=842bp; location=Sequence derived from: Chr_LG13-CM007373.1:3662628..3663469- (Lupinus angustifolius
ATGGCTAGAGTAGTAGGCATTTTCCTGTGTCTCCTGGTTGTAATAATGGA
TGTTGCTGCTGGGATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGG
TATGCTTGAAGCTGACTTTACTTTTTGAAATGCATTTAAGAAATATGTAT
ACAAGCCTACATGGACATCTTTAATGCAGTGGAATTTATATTAAAGTGAA
GTAGTTGATATTTTTTTAACAAACAGGTTAAGCATTTAAGACTATGGATA
TTTGAGTGTAGAGAGCCAAGTCATCAAGCCTTCATGCTTGGGTTGGGTGC
AACAGTACTTTTTGCACTAGCACATGCTATAGCCAACTTTCTTGGTTTCT
GCAGTTGCATTTGTTCTCAACAAGAGTTTGAGAAAGCTTCCTCTAATATG
CAAATCTCAGTGGTTTTCCTTATTTTAACTTGGTAATGTATCTCTGCCTC
TACTACTGGTTTGCATTTAGAAGAACTTATCTGGGTTTATGAGAACAATC
CATGAAACTATTTTATAATATTCTTATAAGCTCTTCTTCTCTCATTTCAA
TATGCTTATCATAAAAACCATTTCTTTGTTGCTTACTTTAAAAGAGGTTA
TTAAATAAACACTTAATCAAGCTTTCTGTCATTCTTTTTCTGATCTCATT
TTGGTTGTGCTGTTAATCAGGGTGGTTTCGGCCATTGGAATGTCCGCGCT
AGTGATTGGAATTATGTCAAACAACAAATCAGATGGTTCATGTGGTTTCA
CACATCATCATTTTCTGTCCATTGGTGGGATTTTGTGTTTTGTACATGGT
CTACTTTGTGTTGCATATTGCTTCTGCCACTGCCTCTGTTGA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3662628..3663469-

>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523; organism=Lupinus angustifolius; type=CDS; length=477bp; location=Sequence derived from: Chr_LG13-CM007373.1:3662628..3663469- (Lupinus angustifolius
ATGGCTAGAGTAGTAGGCATTTTCCTGTGTCTCCTGGTTGTAATAATGGA
TGTTGCTGCTGGGATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGG
TTAAGCATTTAAGACTATGGATATTTGAGTGTAGAGAGCCAAGTCATCAA
GCCTTCATGCTTGGGTTGGGTGCAACAGTACTTTTTGCACTAGCACATGC
TATAGCCAACTTTCTTGGTTTCTGCAGTTGCATTTGTTCTCAACAAGAGT
TTGAGAAAGCTTCCTCTAATATGCAAATCTCAGTGGTTTTCCTTATTTTA
ACTTGGGTGGTTTCGGCCATTGGAATGTCCGCGCTAGTGATTGGAATTAT
GTCAAACAACAAATCAGATGGTTCATGTGGTTTCACACATCATCATTTTC
TGTCCATTGGTGGGATTTTGTGTTTTGTACATGGTCTACTTTGTGTTGCA
TATTGCTTCTGCCACTGCCTCTGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009606DEAL/Modifying_wall_lignin1/2