rna-TanjilR_06523

Transcript Overview


Name	rna-TanjilR_06523
Unique Name	rna-TanjilR_06523_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	842
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG13-CM007373.1	supercontig	Chr_LG13-CM007373.1:3662628..3663469 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL074	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR238	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR246	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR250	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0312	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0316	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0263	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0268	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR0333	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0357	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0255	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0270	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0322	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0331	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0258	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0274	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0292	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0298	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0305	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0343	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0281	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0261	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0262	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR0301	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0303	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0277	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0295	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0242	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0289	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0258	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0319	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0237	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0283	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0294	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0300	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0324	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0264		Cicer arietinum
ancarR0295		Cicer arietinum
anccaR0238	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0256	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0284	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0322	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0324	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0340	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0284	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0301	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0292	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0289	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0317	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR0319	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0316	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR0318	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0335	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0334	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0243	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0320	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0326	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0331	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0262	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0339	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vum_01G01149.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigun05g224100.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vfaba.Hedin2.R1.1g055160.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigun11g113800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Cr_11478.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Ca_02628.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
evm.model.Chr05.2148	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan08g126300	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vfaba.Hedin2.R1.6g011720.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigst.07G066300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Ca_00206	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
PvulFLAVERTChr02.1001276	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
LR48_mrnaVigan09g254600	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
PvulFLAVERTChr05.747	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigst.01G106500.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vum_07G00710.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
rna-XM_004487308.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vum_05G00234.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
XM_058878864.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Va08G054560.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Psat5g265880.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vigan.05G030400.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
XM_058923987.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vigan.06G145000.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Cc_v2.0_23884.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
jg43974.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Va09G061720.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
jg5571.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigan.07G088000.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
PvulFLAVERTChr11.1000680	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vum_06G00957.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
LR48_mrnaVigan05g157300	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigun05g224100.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Psat05G0740500-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
evm.model.Chr11.1111	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Phvul.005G112300.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vfaba.Tiffany.R1.6g008320.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vigst.05G023400.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Ca_14140	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vigun11g113800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Cc_v2.0_09684.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vigan.01G139000.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Va01G021410.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Va05G045390.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
rna-XM_014643160.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
PvulFLAVERTChr06.2129	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vfaba.Tiffany.R1.1g037000.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vigst.06G137900.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_03087	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_30290	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_06523	gene-TanjilG_06523_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_06523	rna-TanjilR_06523_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_06523_La_Tanjil_v1.0	rna-TanjilR_06523_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469	rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469	Lupinus angustifolius	CDS
rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243	rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243	Lupinus angustifolius	CDS
rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799	rna-TanjilR_06523_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469	rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663371..3663469	Lupinus angustifolius	exon
rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243	rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3663038..3663243	Lupinus angustifolius	exon
rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799	rna-TanjilR_06523_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3662628..3662799	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_06523 vs.

BLAST of rna-TanjilR_06523 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Modifying wall lignin-1/2	PFAM	PF06749	DUF1218	coord: 58..145 e-value: 2.5E-17 score: 63.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG13-CM007373.1:3662628..3663469-
coding sequence from alignment at Chr_LG13-CM007373.1:3662628..3663469-

mRNA sequence

>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523; organism=Lupinus angustifolius; type=mRNA; length=842bp
ATGGCTAGAGTAGTAGGCATTTTCCTGTGTCTCCTGGTTGTAATAATGGA
TGTTGCTGCTGGGATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGG
TATGCTTGAAGCTGACTTTACTTTTTGAAATGCATTTAAGAAATATGTAT
ACAAGCCTACATGGACATCTTTAATGCAGTGGAATTTATATTAAAGTGAA
GTAGTTGATATTTTTTTAACAAACAGGTTAAGCATTTAAGACTATGGATA
TTTGAGTGTAGAGAGCCAAGTCATCAAGCCTTCATGCTTGGGTTGGGTGC
AACAGTACTTTTTGCACTAGCACATGCTATAGCCAACTTTCTTGGTTTCT
GCAGTTGCATTTGTTCTCAACAAGAGTTTGAGAAAGCTTCCTCTAATATG
CAAATCTCAGTGGTTTTCCTTATTTTAACTTGGTAATGTATCTCTGCCTC
TACTACTGGTTTGCATTTAGAAGAACTTATCTGGGTTTATGAGAACAATC
CATGAAACTATTTTATAATATTCTTATAAGCTCTTCTTCTCTCATTTCAA
TATGCTTATCATAAAAACCATTTCTTTGTTGCTTACTTTAAAAGAGGTTA
TTAAATAAACACTTAATCAAGCTTTCTGTCATTCTTTTTCTGATCTCATT
TTGGTTGTGCTGTTAATCAGGGTGGTTTCGGCCATTGGAATGTCCGCGCT
AGTGATTGGAATTATGTCAAACAACAAATCAGATGGTTCATGTGGTTTCA
CACATCATCATTTTCTGTCCATTGGTGGGATTTTGTGTTTTGTACATGGT
CTACTTTGTGTTGCATATTGCTTCTGCCACTGCCTCTGTTGA

protein sequence of rna-TanjilR_06523_La_Tanjil_v1.0

>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=158bp
MARVVGIFLCLLVVIMDVAAGILGFEAEIAQNKVKHLRLWIFECREPSHQ
AFMLGLGATVLFALAHAIANFLGFCSCICSQQEFEKASSNMQISVVFLIL
TWVVSAIGMSALVIGIMSNNKSDGSCGFTHHHFLSIGGILCFVHGLLCVA
YCFCHCLC

mRNA from alignment at Chr_LG13-CM007373.1:3662628..3663469-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523; organism=Lupinus angustifolius; type=mRNA; length=842bp; location=Sequence derived from: Chr_LG13-CM007373.1:3662628..3663469- (Lupinus angustifolius
ATGGCTAGAGTAGTAGGCATTTTCCTGTGTCTCCTGGTTGTAATAATGGA
TGTTGCTGCTGGGATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGG
TATGCTTGAAGCTGACTTTACTTTTTGAAATGCATTTAAGAAATATGTAT
ACAAGCCTACATGGACATCTTTAATGCAGTGGAATTTATATTAAAGTGAA
GTAGTTGATATTTTTTTAACAAACAGGTTAAGCATTTAAGACTATGGATA
TTTGAGTGTAGAGAGCCAAGTCATCAAGCCTTCATGCTTGGGTTGGGTGC
AACAGTACTTTTTGCACTAGCACATGCTATAGCCAACTTTCTTGGTTTCT
GCAGTTGCATTTGTTCTCAACAAGAGTTTGAGAAAGCTTCCTCTAATATG
CAAATCTCAGTGGTTTTCCTTATTTTAACTTGGTAATGTATCTCTGCCTC
TACTACTGGTTTGCATTTAGAAGAACTTATCTGGGTTTATGAGAACAATC
CATGAAACTATTTTATAATATTCTTATAAGCTCTTCTTCTCTCATTTCAA
TATGCTTATCATAAAAACCATTTCTTTGTTGCTTACTTTAAAAGAGGTTA
TTAAATAAACACTTAATCAAGCTTTCTGTCATTCTTTTTCTGATCTCATT
TTGGTTGTGCTGTTAATCAGGGTGGTTTCGGCCATTGGAATGTCCGCGCT
AGTGATTGGAATTATGTCAAACAACAAATCAGATGGTTCATGTGGTTTCA
CACATCATCATTTTCTGTCCATTGGTGGGATTTTGTGTTTTGTACATGGT
CTACTTTGTGTTGCATATTGCTTCTGCCACTGCCTCTGTTGA

Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3662628..3663469-

>rna-TanjilR_06523_La_Tanjil_v1.0 ID=rna-TanjilR_06523_La_Tanjil_v1.0; Name=rna-TanjilR_06523; organism=Lupinus angustifolius; type=CDS; length=477bp; location=Sequence derived from: Chr_LG13-CM007373.1:3662628..3663469- (Lupinus angustifolius
ATGGCTAGAGTAGTAGGCATTTTCCTGTGTCTCCTGGTTGTAATAATGGA
TGTTGCTGCTGGGATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGG
TTAAGCATTTAAGACTATGGATATTTGAGTGTAGAGAGCCAAGTCATCAA
GCCTTCATGCTTGGGTTGGGTGCAACAGTACTTTTTGCACTAGCACATGC
TATAGCCAACTTTCTTGGTTTCTGCAGTTGCATTTGTTCTCAACAAGAGT
TTGAGAAAGCTTCCTCTAATATGCAAATCTCAGTGGTTTTCCTTATTTTA
ACTTGGGTGGTTTCGGCCATTGGAATGTCCGCGCTAGTGATTGGAATTAT
GTCAAACAACAAATCAGATGGTTCATGTGGTTTCACACATCATCATTTTC
TGTCCATTGGTGGGATTTTGTGTTTTGTACATGGTCTACTTTGTGTTGCA
TATTGCTTCTGCCACTGCCTCTGTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DEAL/Modifying_wall_lignin1/2

Search form

rna-TanjilR_06523