rna-TanjilR_06522
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana OX=3702 GN=COL12 PE=1 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 3.158e-33 Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 1 MEPLCEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWNHKGCSLLGHRRQALECYSGCPSLTELPSFLSFVID 327
MEP C+ C +A++YCKSD A+LCLNCDV VH AN LS+RH RS++C KC SQ A + C+DEKVS CQGC W+ CS LGHR Q+L +SGCPS T+ S +++
Sbjct: 1 MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEKVSYCQGCHWHESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILE 109 HSP 2 Score: 78.5666 bits (192), Expect = 6.164e-28 Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 2 Query: 1349 EPMPPNGNENINLGFH-------HGQVHSSMPLSLPNITGESSTTDFQDCGLPPGFMTGEPPPWESILEASTPQAREKAKLRYFEKKKTRRY 1603
E PP NIN G GQ+H S+ NITGE++ D+QDCG+ PGF+ E PWE+ E S PQAR +AKLRY EKK R +
Sbjct: 238 EASPPGQQMNINTGLQLPLSPVLFGQIHPSL-----NITGENNAADYQDCGMSPGFIMSE-APWETNFEVSCPQARNEAKLRYKEKKLKRSF 323 HSP 3 Score: 68.9366 bits (167), Expect = 6.164e-28 Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 Query: 1675 FGKQIRYESRKARADTRKRVKGRFVKAGEEFDYDPRGEKS 1794
FGKQIRY SRKARADTRKRVKGRFVKAG+ +DYDP +
Sbjct: 323 FGKQIRYASRKARADTRKRVKGRFVKAGDSYDYDPSSPTT 362
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL11_ARATH (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 3.945e-32 Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 1 MEPLCEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWNHKGCSLLGHRRQALECYSGCPSLTELPSFLSFVID 327
ME C+FC +A++YCKSDSA+LCLNCDV+VH AN LS RH+RS+LC KC+ Q V+CM+E VSLCQGC W C+ LGHR Q+L YS CPS ++ S ++
Sbjct: 1 MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNENVSLCQGCQWTASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE 109 HSP 2 Score: 68.5514 bits (166), Expect = 1.418e-22 Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 Query: 1675 FGKQIRYESRKARADTRKRVKGRFVKAGEEFDYDP 1779
FGKQIRY SRKARADTRKRVKGRFVK+GE F+YDP
Sbjct: 292 FGKQIRYASRKARADTRKRVKGRFVKSGETFEYDP 326 HSP 3 Score: 60.8474 bits (146), Expect = 1.418e-22 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 2 Query: 1400 GQVHSSMPLSLPNITGESSTTDFQDCGLPPGFMTGEPPPWESILEAS-TPQAREKA 1564
G V +M LS+ N+TGES+ TD+QDCG+ PGF+ G+ PWES +E S P+ R++A
Sbjct: 225 GNVVPNMSLSMSNLTGESNATDYQDCGISPGFLIGD-SPWESNVEVSFNPKLRDEA 279
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.017e-30 Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1 Query: 1 MEPLCEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWN-HKG---CSLLGHRRQALECYSGCPSLTELPSFLSFVID 327
M +C+FC R++VYC+SD+A LCL+CD +VH ANALS RHSR+++C +CN+Q A V C DE+VSLCQ CDW+ H G + H+RQ + CYSGCPS EL S SF +D
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMD 113 HSP 2 Score: 56.6102 bits (135), Expect = 1.192e-16 Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 Query: 1672 RFGKQIRYESRKARADTRKRVKGRFVKAGEEFDYDP 1779
+F K++RY SRK RAD R+RVKGRFVK+GE +DYDP
Sbjct: 331 KFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDP 366 HSP 3 Score: 52.7582 bits (125), Expect = 1.192e-16 Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 2 Query: 1295 RDDSPASMMQ--GISNNAICEPMPPNGNENINLGFHHGQVHSSMPLSLPNITGESSTTDFQDCGLPP-GFMTGEPPPW-----ESILEASTPQAREKAKLRYFEKKKTRRY 1603
+D++ MQ +SNNA + E I + + HS+ +S ITGES+ DFQDCG ++ EP PW + I+ +S R A +RY EKKK R++
Sbjct: 225 KDEAHEGSMQQPALSNNASADSFMTCRTEPI-ICYSSKPAHSN--ISFSGITGESNAGDFQDCGASSMKQLSREPQPWCHPTAQDIIASSHATTRNNAVMRYKEKKKARKF 332
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana OX=3702 GN=COL9 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.264e-29 Identity = 61/120 (50.83%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 1 MEPLCEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWN-----------HKGCSLLGHRRQALECYSGCPSLTELPSFLSFVID 327
M +C+FC R++VYC+SD+A LCL+CD SVH ANALS RHSR+++C +CN+Q A V C++E+VSLCQ CDW+ S H+RQ + CYSGCPS +EL S SF +D
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120 HSP 2 Score: 60.077 bits (144), Expect = 4.141e-16 Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 Query: 1672 RFGKQIRYESRKARADTRKRVKGRFVKAGEEFDYDP 1779
+F K++RY SRKARAD R+RVKGRFVKAGE +DYDP
Sbjct: 330 KFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDP 365 HSP 3 Score: 47.3654 bits (111), Expect = 4.141e-16 Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 2 Query: 1424 LSLPNITGESSTTDFQDCGLPPGF-MTGEPPPWESILE----ASTPQAREKAKLRYFEKKKTRRY 1603
+S +TGESS DFQ+CG ++GEPP + L+ S R A +RY EKKK R++
Sbjct: 267 ISFSGVTGESSAGDFQECGASSSIQLSGEPPWYPPTLQDNNACSHSVTRNNAVMRYKEKKKARKF 331
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana OX=3702 GN=At1g68190 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 8.021e-26 Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 1 MEPLCEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWNHKGCSLLGHRRQALECYSGCPSLTELPSFLSFVI 324
ME +CEFC RAVVYC +D+A LCL CD VH AN+LS RH R+VLC+ C +Q +V C D K+ LC GC+ G HRR+ L CY+GCP + F +
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHRRRDLRCYTGCPPAKDFAVMWGFRV 117
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana OX=3702 GN=COL13 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.904e-22 Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 10 LCEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWNHKGCSLLGHRRQALECYSGCPSLTELPSFLSFVIDAISSCGGGLDHGWES 372
LC++C A+VYCK+DSA+LCL CD VH AN L +H RS+LC+ CN + ++C E+ LCQ CDW H S H R+ E ++GCPS+ EL + + +D ++ G L WES
Sbjct: 12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLHSRRPFEGFTGCPSVPELLAIVG--LDDLTLDSGLL---WES 127
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 5.093e-20 Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1 Query: 13 CEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWN-HKGCSLLG-HRRQALECYSGCPSLTELPS 306
CEFC AV++C++D+A+LCL CD VH AN LS +H RS +C+ C+ + V C + + LCQ CDW+ H CS H R A+E +SGCPS+ EL +
Sbjct: 12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAA 111
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana OX=3702 GN=COL15 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.881e-19 Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 13 CEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWN-HKGCSLL-GHRRQALECYSGCPSLTELPSFLSFVID 327
C+FC AV++C++D+A+LCL CD VH AN LS +H RS +C+ C ++ V C + + LCQ CDW+ H CS+ H R A+E +SGCPS EL + ++
Sbjct: 9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWGLDLE 115 HSP 2 Score: 49.6766 bits (117), Expect = 7.915e-7 Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 Query: 1672 RFGKQIRYESRKARADTRKRVKGRFVKAGE 1761
R+ K IRYESRKARADTR RV+GRFVKA E
Sbjct: 400 RYDKTIRYESRKARADTRLRVRGRFVKASE 429 HSP 3 Score: 26.1794 bits (56), Expect = 7.915e-7 Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 2 Query: 1544 PQAREKAKLRYFEKKKTRRY 1603
Q R A RY EK+KTRRY
Sbjct: 382 AQNRGDAMQRYKEKRKTRRY 401
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 3.495e-10 Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 1 Query: 10 LCEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWNHKGCSLLGHRRQAL 264
LC+ C A +YC+ D+A LCL+CD VH AN L+ RH+R +C C A V C + +LC CD + + L R + +
Sbjct: 5 LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERV 89
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.602e-10 Identity = 32/84 (38.10%), Postives = 42/84 (50.00%), Query Frame = 1 Query: 13 CEFCVVVRAVVYCKSDSARLCLNCDVSVHGANALSYRHSRSVLCNKCNSQSAIVYCMDEKVSLCQGCDWNHKGCSLLGHRRQAL 264
C+ C VYC++DSA LC +CD VH AN L+ RH R +C C A +C + SLC CD + L R Q +
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRV 95 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06522 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_06522_La_Tanjil_v1.0 ID=rna-TanjilR_06522_La_Tanjil_v1.0; Name=rna-TanjilR_06522; organism=Lupinus angustifolius; type=mRNA; length=1800bpback to top protein sequence of rna-TanjilR_06522_La_Tanjil_v1.0 >rna-TanjilR_06522_La_Tanjil_v1.0 ID=rna-TanjilR_06522_La_Tanjil_v1.0; Name=rna-TanjilR_06522_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=434bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3675219..3677018- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_06522_La_Tanjil_v1.0 ID=rna-TanjilR_06522_La_Tanjil_v1.0; Name=rna-TanjilR_06522; organism=Lupinus angustifolius; type=mRNA; length=1800bp; location=Sequence derived from: Chr_LG13-CM007373.1:3675219..3677018- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3675219..3677018- >rna-TanjilR_06522_La_Tanjil_v1.0 ID=rna-TanjilR_06522_La_Tanjil_v1.0; Name=rna-TanjilR_06522; organism=Lupinus angustifolius; type=CDS; length=1305bp; location=Sequence derived from: Chr_LG13-CM007373.1:3675219..3677018- (Lupinus angustifoliusback to top |