rna-TanjilR_19700

Transcript Overview


Name	rna-TanjilR_19700
Unique Name	rna-TanjilR_19700_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	7086
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG13-CM007373.1	supercontig	Chr_LG13-CM007373.1:3839377..3846462 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL074	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR238	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR246	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR250	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0309	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0311	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0263	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0306	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0335	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0330	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0342	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0357	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0255	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0270	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0322	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0331	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0258	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0274	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0292	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0343	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0281	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0295	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0261	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0262	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR0301	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0308	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0303	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0310	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0277	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0295	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0242	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0289	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0308	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0258	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ancanR0237	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0269	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0283	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0324	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0264		Cicer arietinum
ancarR0295		Cicer arietinum
anccaR0238	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0256	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0324	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0340	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0301	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0319	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0318	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0335	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0334	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0243	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0320	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0331	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0262	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Cc_v2.0_23835.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vfaba.Hedin2.R1.6g014880.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-XM_014646819.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
evm.model.Chr05.2179	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vum_07G00671.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigun05g227600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
PvulFLAVERTChr05.773	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigan.07G083500.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Ca_00801.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Psat07G0544400-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
XM_058877271.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Cr_17266.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vigst.07G062900.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Ca_25835	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vfaba.Tiffany.R1.6g011120.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Psat05G0733400-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
rna-XM_012717380.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
LR48_mrnaVigan05g161400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Phvul.005G115700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
jg44053.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Va05G046170.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vigun05g227600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
jg7382.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_01343	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_19700	gene-TanjilG_19700_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_19700	rna-TanjilR_19700_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_19700_La_Tanjil_v1.0	rna-TanjilR_19700_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:

The following CDS feature(s) are a part of this mRNA:

Homology

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp16 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.932e-24
Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 3

Query: 1314 VEPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRK 1745
            +E   +L++ LL +Q+E + W  +QE S   GGILADEMGMGKTIQ IAL+L+            EP   P           TLV+ PVVA+ QW  EID  T K  +  L Y+G  R+ SGE+ S YD V+T+Y+++ES YRK
Sbjct:  245 IEQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLS------------EPRGKP-----------TLVVAPVVAIMQWKEEIDTHTNKALSTYL-YYGQARDISGEELSSYDVVLTSYNVIESVYRK 364

HSP 2 Score: 105.531 bits (262), Expect = 3.087e-21
Identity = 76/243 (31.28%), Postives = 113/243 (46.50%), Query Frame = 1

Query: 5284 TSCEHVFCKSCLIDFSTSLG---RVSCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLENFQTSTKIEALVCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
            + C H FC+ C+ ++  + G    V+CPSC   L++DL++  +      K     F+++SILNRI + ++++STKIEALV                                                   EE+  + ++D + K IVFSQ+TS LDLI++ L K                          +G +CV+L+G M+  AR A I+ F ++    IFL+SLKAGGVALNLT AS V
Sbjct:  622 SRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEK-----FKNASILNRIDMNSWRSSTKIEALV---------------------------------------------------EELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRK--------------------------AGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQV 782

HSP 3 Score: 50.8322 bits (120), Expect = 4.789e-8
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 3

Query: 3465 FG*YVATPIQSYGYGDCGRRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVS 3626
            F   +  PIQ +GY   G+ A   + H +LK+I+LRRTK+ RA DL LPPR+V 
Sbjct:  481 FNAEMLKPIQKFGYEGPGKLAFKKV-HSLLKHIMLRRTKLERADDLGLPPRVVE 533

HSP 4 Score: 31.5722 bits (70), Expect = 4.789e-8
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 1

Query: 3709 VSLRKDSLDIKEQDYYESLYNESQSQFNT 3795
            V +RKD  + +E+D Y+SLY +S+ +FNT
Sbjct:  532 VEVRKDLFNEEEEDVYQSLYMDSKRKFNT 560

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus OX=10090 GN=Ttf2 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.557e-21
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 3

Query: 1314 VEPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMS-CEADEPSS--SPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESE 1736
             E  + L +PLL +QK+ LAW L +ES   +GGILAD+MG+GKT+  IAL+L K+   +    E  EP +  S   S+V  +  GTL++CP   +  W +E+++       ++ +YHG  R +  +  S YD VITTYS++  E
Sbjct:  536 AEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWLSKNDSSVFTS-SGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKVLSTYDIVITTYSLLAKE 678

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: RAD16_YEAST (DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD16 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.980e-21
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 3

Query: 1332 LIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKH 1748
            + + LL +Q E L W + QE S+  GG+LADEMGMGKTIQ IAL++            ++ + SP           +LV+ P VA+ QW +EI++ T KG  K+ +YHGA R    +    YD V+TTY+++ES +RK 
Sbjct:  180 MTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALLM------------NDLTKSP-----------SLVVAPTVALMQWKNEIEQHT-KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESVFRKQ 294

HSP 2 Score: 88.9669 bits (219), Expect = 3.280e-16
Identity = 71/245 (28.98%), Postives = 107/245 (43.67%), Query Frame = 1

Query: 5284 TSCEHVFCKSCLIDFSTSL----GRVSCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLE-NFQTSTKIEALVCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
            + C H FC+ C+ ++  S      +++CP C   L++DL+        A +  +  F+  SI++R+ +   +Q+STKIEALV   +YK       + SN++                                           + K IVFSQ+TS LDL+ + L +                          +G   V+L G MS   RD  IK F++N +C +FL+SLKAGGVALNL  AS V
Sbjct:  550 SKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQ------PALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALV-EELYK-------LRSNKR-------------------------------------------TIKSIVFSQFTSMLDLVEWRLKR--------------------------AGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQV 711

HSP 3 Score: 73.1738 bits (178), Expect = 2.663e-11
Identity = 45/151 (29.80%), Postives = 63/151 (41.72%), Query Frame = 1

Query: 6625 AKVFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKKELVFEG*V*YVNRQLERCSVCLP**IT*YVMTFCFFFPPFNRTIGGSSEALGKLTEADLKFLF 7077
            ++VF++DPWWNP+VE Q+ DR+HRIGQY+P+                                   +I RF IE++IE RI++LQEKK  +                                       TI     A+ +LT ADL+FLF
Sbjct:  709 SQVFILDPWWNPSVEWQSGDRVHRIGQYRPV-----------------------------------KITRFCIEDSIEARIIELQEKKANMIHA------------------------------------TINQDEAAISRLTPADLQFLF 788

HSP 4 Score: 67.0106 bits (162), Expect = 1.857e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 2

Query: 2474 AHYIKSRHSNTAKAVLALESSYRWALSGTPLQNRVGELYSLVSLL 2608
            AH IK R SNTA+AV  L++  RW LSGTPLQNR+GE+YSL+  L
Sbjct:  324 AHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFL 368

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens OX=9606 GN=TTF2 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.426e-18
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 3

Query: 1308 ETV--EPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSS----PGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESE 1736
            ETV  E  + L +PLL +QK+ LAW L +ES   +GGILAD+MG+GKT+  IAL+L ++  +Q   E  E S++        +      GTL+ICP   +  W +E+++       +V +YHG  R+      S YD VITTYS+V  E
Sbjct:  556 ETVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQK--NQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKE 702

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: CHR27_ARATH (Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.219e-18
Identity = 70/225 (31.11%), Postives = 104/225 (46.22%), Query Frame = 3

Query: 1254 DENLLEDFDIDHQSEVMNETVEPSSDLIMPLLRYQKEWLAWALKQESSV--TKGGILADEMGMGKTIQAIALVLAKREFHQM----SC---------EADEPS-----------------SSPGSSTVLPAI-------------------------------KGTLVICPVVAVTQWVSEID-RFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESE 1736
            DE L+    +   ++ M E+  P   L +PL+R+QK  LAW  ++E+S     GGILAD+ G+GKT+  IAL+L ++   Q+    SC         +AD+ S                 SS   ++VL A                                 GTL++CP   V QW  E+D + + +    VLVYHG+ R K   + +EYD V+TTY+IV +E
Sbjct:  251 DERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDSSDMEKAEDEEANSSTRAFQWKRPAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTNE 475

HSP 2 Score: 70.0922 bits (170), Expect = 2.917e-10
Identity = 72/263 (27.38%), Postives = 109/263 (41.44%), Query Frame = 1

Query: 5251 IFFKC---PFSFQVTSCEHVFCKSCLIDFSTSLGRV-SCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLENFQT----STKIEAL--VCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMV--ERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
            I ++C   P    VT C H+FC  C++++ T        P C + L  D+          N T+     SSS  N +    FQ     S+KI+A+  +   + +   PN    S Q     G    S   +    + ++          E +R        G+ K I+FSQ+T  LDL+   +                          L+SG+   +L+G MSL ARD A+K F   P+ ++ LMSLKAG + LN+  A HV
Sbjct:  750 ICYECNEPPEKPVVTLCGHIFCYECVLEYITGDENTCPVPRCKQQLARDVV--FSESSLRNCTSDDSGCSSSHDNGLDRSVFQKRDFCSSKIKAVLDILQSLSQPDSPN----SAQH----GQMPSSSRPYDDDDVTIV----------EPMRLHSSSPSQGAVKTIIFSQWTGMLDLVELRI--------------------------LESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHV 966

HSP 3 Score: 58.9214 bits (141), Expect = 7.340e-7
Identity = 30/89 (33.71%), Postives = 40/89 (44.94%), Query Frame = 1

Query: 6631 VFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKKELV 6897
            V L+D WWNP  E QA DR HRIGQ +P+                                    + R  I++T+E+RILKLQE+K  +
Sbjct:  966 VILLDLWWNPTTEDQAIDRAHRIGQTRPV-----------------------------------TVTRITIKDTVEDRILKLQEEKRTM 1019

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC23E6.02 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.319e-17
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3

Query: 1332 LIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEI-DRFTLKGSTKVLVYHG-AKREKSGEQFSEYDFVITTYSIVESEYRKHM 1751
            LI  L+ +QKE L W  + E S  KGGILAD+MG+GKT+QA+AL++ +                P S +V    K TL+I PV  + QW +EI  +        V ++HG +K+ K  EQ   YD V+TTY+++  E++  M
Sbjct:  386 LIPTLMEHQKEGLMWLKRLEESSKKGGILADDMGLGKTVQALALLVTR---------------PPESKSV----KTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKM 508

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: CHR28_ARATH (Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.080e-17
Identity = 64/220 (29.09%), Postives = 102/220 (46.36%), Query Frame = 3

Query: 1233 EQQEKWVDENLLEDFDIDHQSEVMNETVEPSSDLIMPLLRYQKEWLAWALKQESSV--TKGGILADEMGMGKTIQAIALVL-------------AKREFHQMSCEADEPSSSP---------------GSSTVLPA-----------------IKGTLVICPVVAVTQWVSEID-RFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKH 1748
            E++    DE L+    +   ++  +E   P+  L +PL+++QK  LAW  ++E++     GGILAD+ G+GKT+  IAL+L               +E   +  +AD+ S +                G S +  A                   GTL++CP   V QW  E+D + T +    VL+YHG  R K   + ++YD V+TTY+IV +E  K 
Sbjct:  189 EERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKLKSKNSGNQEAEALDLDADDESENAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQ 408

HSP 2 Score: 62.3882 bits (150), Expect = 5.699e-8
Identity = 64/258 (24.81%), Postives = 107/258 (41.47%), Query Frame = 1

Query: 5266 PFSFQVTSCEHVFCKSCLIDFSTSLGRVSCPS--CSKLLTVDLTSNMVAGVHANKTTIKGFR------SSSILNRIQLENFQ----TSTKIEALVCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
            P    VT C H+FC  C+ D+ T     +CP+  C + L  D+          +K+T++         SSS  N      FQ    +S+KI+A++      ++      + N +      +           + ++    LK              G  K I+FSQ+T  LDL+  +L                          +++ +   +L+G MSL ARD A+K F ++P+ ++ +MSLKAG + LN+  A HV
Sbjct:  686 PEDPVVTLCGHIFCYQCVSDYITG-DEDTCPAPRCREQLAHDVV--------FSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLSNQGTSNSTQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLK--------STPSNGGPIKTIIFSQWTGMLDLVELSL--------------------------IENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHV 900

HSP 3 Score: 59.6918 bits (143), Expect = 3.598e-7
Identity = 44/150 (29.33%), Postives = 66/150 (44.00%), Query Frame = 1

Query: 6466 ISSNISF---DADCEIIYQNK*LKVFGNFPPLNNFLLSSLEA------LVFPC*HVVLFFGDAKVFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKK 6888
            I ++I F   D    +I +++ +K F N P +   ++ SL+A      ++  C HV+L         +D WWNP  E QA DR HRIGQ +P+                                    + R  I+NT+E+RIL LQE+K
Sbjct:  847 IENSIEFRRLDGTMSLIARDRAVKEFSNDPDVK-VMIMSLKAGNLGLNMIAAC-HVIL---------LDLWWNPTTEDQAIDRAHRIGQTRPV-----------------------------------TVTRITIKNTVEDRILALQEEK 950

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster OX=7227 GN=lds PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.826e-16
Identity = 56/153 (36.60%), Postives = 79/153 (51.63%), Query Frame = 3

Query: 1332 LIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIK----------------GTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYR 1742
            L + L+ +QK  LAW   +E  + +GGILAD+MG+GKT+  I+ VLA +   +MS   DE S S          K                GTLV+CP   + QW SE++    +    V V+HG  RE  G+   +YD V+TTY IV  E++
Sbjct:  435 LKVSLMNHQKHALAWMSWRERKLPRGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHK 587

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: YBMA_SCHPO (Uncharacterized ATP-dependent helicase C582.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC582.10c PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.740e-15
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 3

Query: 1344 LLRYQKEWLAWALKQESSVTK----GGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKH 1748
            LL +Q + L W LK   +V+K    GGILAD+MG+GKTIQ IAL+L+    H +  +               +IK TLV+ P+  + QW SE+     K     +VYHGA R K  +   EYD VITTY I+ SE+  H
Sbjct:  233 LLDHQVQGLTW-LKSRETVSKSSASGGILADDMGLGKTIQMIALILS----HPLPKKKH-------------SIKSTLVVAPLSLIKQWESEVQ---TKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSEWVSH 350

[Close]

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: SM3L3_ARATH (DNA repair protein RAD5B OS=Arabidopsis thaliana OX=3702 GN=RAD5B PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.263e-14
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 3

Query: 1392 SSVTKGGILADEMGMGKTIQAIALVLAK--------REFHQMSCEADEPSSSP--GSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKHM 1751
            + + +GGILAD MG+GKT+  IAL+LA+         +       AD+ +      + T + A  GTL+ICP+  ++QW  E++  +   +  VLVY+G  R    +  + +D V+TTY ++ S Y++ M
Sbjct:  677 TQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQDM 806

HSP 2 Score: 60.8474 bits (146), Expect = 1.739e-7
Identity = 33/92 (35.87%), Postives = 45/92 (48.91%), Query Frame = 1

Query: 6631 VFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKKELVFEG 6906
            VFLMDPWWNPAVE QA  RIHRIGQ    R  F+                                 RF++++T+EER+ ++Q +K+ +  G
Sbjct: 1201 VFLMDPWWNPAVEEQAIMRIHRIGQK---RTVFVR--------------------------------RFIVKDTVEERMQQVQARKQRMIAG 1257

HSP 3 Score: 59.6918 bits (143), Expect = 3.713e-7
Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = 1

Query: 5686 VERDGSA-KGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
            +++ GS  K IVFSQ+TSFLDL+   L +                           G   ++ +G+++   R+  +K F +  +  I LMSLKAGGV LNLT AS V
Sbjct: 1121 IKKSGSGEKSIVFSQWTSFLDLLEIPLRR--------------------------RGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSV 1201

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_19700 vs. DB:Swiss

BLAST of rna-TanjilR_19700 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RHP16_SCHPO	7.932e-24	44.44	ATP-dependent helicase rhp16 OS=Schizosaccharomyce...	[more]
TTF2_MOUSE	7.557e-21	38.89	Transcription termination factor 2 OS=Mus musculus...	[more]
RAD16_YEAST	8.980e-21	40.29	DNA repair protein RAD16 OS=Saccharomyces cerevisi...	[more]
TTF2_HUMAN	1.426e-18	39.60	Transcription termination factor 2 OS=Homo sapiens...	[more]
CHR27_ARATH	2.219e-18	31.11	Helicase-like transcription factor CHR27 OS=Arabid...	[more]
YG42_SCHPO	3.319e-17	38.03	Uncharacterized ATP-dependent helicase C23E6.02 OS...	[more]
CHR28_ARATH	6.080e-17	29.09	Helicase-like transcription factor CHR28 OS=Arabid...	[more]
TTF2_DROME	1.826e-16	36.60	Transcription termination factor 2 OS=Drosophila m...	[more]
YBMA_SCHPO	1.740e-15	41.01	Uncharacterized ATP-dependent helicase C582.10c OS...	[more]
SM3L3_ARATH	2.263e-14	33.08	DNA repair protein RAD5B OS=Arabidopsis thaliana O...	[more]

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 374..394
None	No IPR available	COILS	Coil	Coil	coord: 737..757
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 665..705 e-value: 5.5E-7 score: 29.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..124
None	No IPR available	CDD	cd18793	SF2_C_SNF	coord: 748..875 e-value: 6.23937E-52 score: 176.128
None	No IPR available	CDD	cd18008	DEXDc_SHPRH-like	coord: 208..516 e-value: 6.37103E-82 score: 262.223
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 663..710
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 781..864 e-value: 5.2E-15 score: 65.9
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 750..864 e-value: 5.5E-13 score: 49.2
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 746..910 score: 14.248
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 204..513 e-value: 1.3E-27 score: 107.7
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 221..495 score: 16.614
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 666..705 e-value: 1.1E-5 score: 35.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 666..706 score: 12.135
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 227..498 e-value: 7.3E-50 score: 169.6
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 377..586 e-value: 3.8E-26 score: 93.5
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 210..353 e-value: 1.3E-24 score: 88.5
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 656..720 e-value: 3.7E-11 score: 44.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 681..690
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 579..918
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 162..568

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG13-CM007373.1:3839377..3846462+
coding sequence from alignment at Chr_LG13-CM007373.1:3839377..3846462+

mRNA sequence

>rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700; organism=Lupinus angustifolius; type=mRNA; length=7086bp
ATGGAACTTCGTTCTCATCGACGACGCCTTTCCGAATCATCACTCTCCGG
TAACACTATCTTTCTCACTctacttttctcttttctcttttcgtTCTTTG
GTTATTGACTTTGACGCTGTTTGATTACTGAGAAAATTTTATCGAATCGT
GACCGATCGTGATTTTTGGCCATGTCAATGCTTTTTCCTTTGTTGTCTGT
TCAAGtgtgtattttattattattattattatattattgctattattatt
atttttccatttttgcGAAATTTGAATCAAAATATTCTGCTTCGGTATGC
GTTGTGTTTAATTGAAAGTTGCTGTGTCAAATATAGCAATTTACTTTGGG
AAACTGAggtataattaatattaatcttTATTGATTGTAATGTTCAATTG
TTCATCCTTTGAATTAAGGAACAGGGAAGGAGAAGCAACCAAGAGATGGC
ATTGGGGAAGATGAAACTAATAGCAAGTGCAGCAATGACACCAATGAACA
TGTTCATGACATTTCTTCAGATTCTGATTTCAATTGTGAAGGTATATTGC
CTTTCTCTCCAGTTTGAATTTTTATGAAGATTTTGATTTTGAGATGTATG
TTTGTTTGGCTACAAGTGTGGGTTTTAAACTTTGTCTTTTGTCCACTTTA
AAGGAAATAATGTTCTTTCTCTGACATGTTTGTAGTCATAACTCGAGAAG
ATGTTTATGAACAAGTAACATGTCTATTATTTGTGTTTATAGTTTGACAT
GTGATTGAACTCTGAATGTAACGAAAACTGAGTAAAACTTACTAGTTAAC
ATTTCCTTCCTCTCTGGGAGAAAAATGTAACTCTTTTATCCTGCAAATTT
AGCAGTGAATTTCATTCTGTTTCTCCCCTTAAAAATCCATACAGATGAAG
AGTTCGGTGTGAACTTCATTCCTGACTTGAATGAAGAACCAATTTCAAGC
ATCAGTGTTTCTGATGGAGAAGATATTCTCTCTGACTCATATGATGCTAT
AGAGCCTTTATTGAATAGTGGAAAGTCGCAGTccagaaggaaaagaaaaa
aatccgGCTTCGGAGAACCAAGTGATGGTGATAGAGTGGTGGAGAATGGG
GATGATGAGGAACATTTGATGGTTTTTCAGCAATCAGCCCCTATTAATTT
GACCaagacaaaaaagaagaaaaaagggaaAAGGACAAGAAAGGAAGATT
CAAAGCCAGTGTTATTGTGGCATGCTTGGGAAGAGCAGCAAGAGAAATGG
GTCGATGAGAATTTATTGGAAGATTTTGACATAGATCACCAGAGTGAAGT
AATGAATGAAACTGTCGAGCCATCCTCAGATCTGATTATGCCTTTGCTAA
GGTATCAAAAGGAATGGTTAGCATGGGCTTTGAAACAGGAAAGTTCTGTG
ACTAAAGGAGGAATCCTTGCTGACGAAATGGGAATGGGGAAGACTATTCA
AGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCACCAGATGAGTTGTG
AAGCAGATGAACCATCATCTTCACCAGGTTCATCTACAGTCTTGCCTGCC
ATCAAAGGCACACTTGTCATCTGTCCTGTGGTTGCTGTCACTCAATGGGT
TAGTGAGATTGATCGGTTTACTTTGAAAGGAAGCACCAAGGTGTTGGTTT
ATCACGGGGCAAAGAGAGAGAAGAGTGGTGAACAGTTCTCAGAGTATGAC
TTTGTAATAACAACATACTCTATTGTGGAGTCTGAATACAGAAAGCATAT
GATGCCTCCTAAGGAGGAGTGCCAATATTGTGGAAAATTATTTAACCCAA
GGAGTTTAACTTCTCATCAGAGGTATTTTTGTGGGCCTGGTGCTACTAGA
ACAGATAAACAAGCAAagcaaataaagaaaaagaaaagagatctTACTAA
GAAGAAGCTCAAAGAATTGAAGTCTTGGGACGAAGAATTGGAAAAGGgtt
ttatgaagaaaaagaatttgGAATTGCGGTCGAGGACAAAAGATTCAGAT
ACCAAAGACAGGGACAAGTCATTTCTACATGCTGTGAAGTGGCAGCGTAT
CATACTGGATGAGGTCAGTTGCGAAAATATACTATTATTAAAAGCTAATG
TAATCATACTGTTTTTCTATACTTAGAATTTcctataaaatgttatttta
tgaaataaaagcACCATCTTGTGTCTTTCCTGTTGTTTCCACTTTCTCTA
TTTGTAAACATTGCAAGTTTCCTTTCTTTCTTGTTTGACTGTGCCCTGAT
AAACATTGTTATCTGTTCCCCCCCTAGAAACTCTGTTATCTGTTATCTGT
TATCTGTTATCTACTAATCAGTCATATTCACAAGTAAAGAAAGTAACAGA
TTATAAGCTTGACCTTAGTTTTATGGCTTAGTGGCTctaattttatgttt
cttataTTACCATTTTGTGTTATTTTACCTCGTCAAACATCTATCTAaaa
ctttttttcttatatGATAATAGGCACACTATATAAAATCTAGACATTCT
AACACTGCAAAAGCAGTTCTGGCTTTAGAGTCCTCCTACAGATGGGCATT
AAGTGGCACTCCCCTTCAGAACCGGGTTGGAGAGCTGTATTCTTTGGTAA
GTTTACTGTTTTTGGCTGTAATCTGTCAAgtttgatattttgatattatt
tgtcaaggaccgattctttctagAGGTTGTTAGGTCAAGGTCCATGAATG
GTTTTATATGtcaactttaaaataatttaccTACAATGCCATGCATGCAG
GTGCGATTTCTGCAAATAATTCCTTATTCATATTACTTATGCAAGGACTG
TGATTGCAAGATACTTGATCATAGGTATGGTTTTGGATTCAGTATTTTTA
ATGAACTGCGTGGATTCTAATTTAACTGGCAATCGTCGTATTTATGGCCT
TGATAGTTTATCCCTCTTGTGTGACTTGCTAAGAAAGGAACTGAATTCTC
AGCtttgttttctcatttttcatattGATCAAATGATTGCTTGAAAGACT
TCATGAATCTATTCTCCACTGGGTTCCACTCATGTAAAACAGAGaaaaat
gcttcttttttaGAGTATTTCATTATATCTAAATCTTTATATTCATGCTT
CAAACTTTGTAATGTTGAGGTTCATGACTGAATCTTTCTTTTACTGCTTT
CTGATCACTATTTATGCTAATGTGTTGTATCTGTTTGTGTGCATTCATAA
CATATGTGCATGTACATTTTTAAATGGTTGGTTTTCTTGATTTGTTATGT
TTGTTATCCTGGTGCCCTTTGCAGCTCCTCTAGACAATGTTCAAACTGCA
ACCACAGTACTGTTAGACATTTCTGTTGGTGGAACAAAGTAAGTTCTGCA
CATTTTCTTTTTGTGTTCTCCATTTTAGATAGAAACAGAGAGATAAACTC
TTGTAATTTCCTGGAAATTGTTTTAGCTAACACATGGACGTGTGTGTTAT
TATTCATGTTTCGTTTTGGTTAGTATGTTGCCACACCAATTCAATCATAT
GGGTATGGCGATTGTGGAAGAAGAGCTATGATATTGCTTAAACACAAAGT
TTTAAAGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCCGACC
TTGCACTTCCGCCTAGAATTGTAAGTTCTTGTTTCCCATGTGGCTGTGTG
TGCAATTCTAAATTCAGAGTGAGTACATATttatttctctaattttttgt
CGTTGCAGGTTTCATTAAGGAAGGATAGCCTGGACATAAAAGAGCAAGAC
TATTATGAATCGTTATACAATGAAAGTCAGTCACAGTTTAATACGTAAGT
CATGTTCTTTATCTTTACcataaaatatgatgaaaaggTTGACTTTGAAA
AGAGCGAACCTTTGATAAGAATTAGATTGCATTTTGTGGGCGGGGATGAA
TTCCTTGATTAAACCACCAAGTTATGAATGAAATAGTCCTGGAATTCATT
AGTAGTCCTGAAATTCCTTTTGTTAACGAGGGTAGTCTGGTAGGTCAAAA
CATAAGCCATAAAACTCTATGTGAAACTCTTACCCAACATGTGGTTAGTT
GGCTTACCATACCTTGAGAGTTTCCAAACTGGTTTTGCATGCATTCATGG
AAGATTATATTGGACAATAGCCAATGGGCCTATTCTCATGTATTCTCTAT
ATTCTTTCGTTGACATTACATTAtcactcatcatatgaaaatttGTTGTT
ACTTGAATTCTTTTTTCCTCACTTTTCGATCGGAAGGAAgaaggaagaga
agaaagaagtgaTGGGAAATGGATGAGTAATAAAGTGAGATTAAACCCTT
CACTCTTCAGGACATCCTTCATGTTAATGTATTGATGTTTTTTTGGGTGG
CGAGGAAAATTGGTTTCCagttcttttttttcttctatggACCTACCATT
CATATACGTAGTCTTTTATTACCATGTCTTTGATATTGGGAAAATTCATT
CTTCTATTGATACACAATTTCAATAGTGTGTTcaaatattttacttttga
aACATCAACATTAAACATACCGTGGTATAGGTATTACTAATATGCTTTCT
CCTTTGCAGATATGTTGAAGCAAATACTCTCATGAATAATTATGCTCATA
TATTTGACCTCCTTACACGATTGCGTCAGGTGAATGATCATTCTAACACG
ACCCCCAAAAAAATACTATACTTTTGCCATGtaatctttttctctctttg
aaCTTTTATGCTACAATATCTATTATGTTTATGTGGGGACATGTCTGTAA
AGACACTGTTAAATTAAAAAGCAGTGTAGGATAGACATTCattgatttca
ttttaaaaCTGAGTGACTTTGAAATATGGTTATATATGCTTACTTTATTT
CAATCCTCGTCTTTCATGTGGGATCTGGGAAGTCAGTTTCCCTTAGTTTT
CATTGAATATATTCAGATTTATTTGTACTTTTGTTCTGCCTCAATTACTT
GAAAGTGTTATTTCTGCCCATGTGTCTCATACATCTATGGTCGAAATATA
CAGGCTGTTGATCACCCATATCTTGTGGTATATTCTCCAACTGCAGCATT
AAGAGGTGGGAATTTAGCTGGTAATGGTACTGTTGAACAAGAATGTGGCC
TTTGTCATGATCAAGTAGAAGATCCTGTGGTATGGtcaacttctttttct
ttttaaataaacttatttgtcaaatttttttgttttattttcccTCCTTT
TCATACGTGTATGTGGAAAAGTTATTTCAGCCAACGTTAGTGTGCtattg
attttctttaaatgtCCTTTCTCCTTTCAGGTTACTTCTTGTGAGCATGT
TTTTTGCAAGTCATGCTTGATAGACTTTTCTACTTCCTTGGGACGAGTAT
CATGCCCCTCATGCTCTAAATTGCTTACTGTTGATTTAACTTCCAACATG
GTTGCTGGGGTTCATGCtaataaaacaacaattaagGGTTTCAGATCCTC
AAGCATTTTAAACAGAATTCAGCTCGAAAATTTTCAGACAAGCACTAAAA
TAGAGGCATTGGTATgtacatacatatataaaactcacTTACCTAATATT
TGAGTAAGTAGTAATCAGAAATAATGCTTCTGTGGCTGGGAAAAGTGGTC
CGTGTTTATGTTTTTACAATCTATCATAATTGTCTTGTATCTGAATGAGT
TGAAATTGTTGTAGAGAGAAGAAATCAGATTTATGGTTGAAAGGGATGGT
TCTGCCAAAGGGATTGTTTTTAGCCAGTACACATCATTCTTGGATCTCAT
AAACTACGCCCTGAACAAGGTAAATTTACTTGCCACTTTCTATTTCATTA
ATGCATGCAAAATATGTCAGGACAATAACATGGTGAGCTAATTGCAGTCA
GGCGTATCTTGTGTTCAATTGAATGGACAAATGTCATTGCCTGCTCGGGA
TGCTGCCATTAAGAGGTTTATTGATAACCCCGAATGCAGAATTTTTCTCA
TGAGCTTGAAAGCAGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACAT
GTAAGCAATCTCCTTTTGCATGTTTGTGCTGTGTCAATCCTTTTGGTATT
CTGCTTTGTGGAATTTTAAGTCGAGTTGTAAAGTAGttggaaatattttt
ataccTCATCATTTTGGCATGCACAAAAAGTTATAACACCGCTGTACATA
AATCAGTTCTACAGTCGATATGTGCTGGAGTTCTGTTGCATGACAAGTTT
TGTTTAGCTCCATTGTATTGGAGATTTTGTTCACGTTTTTACAGGAGCTT
CTTACTGTTTAAAATAGTTTATCCTTTAATTGATTTCCACTCCAAAGCTG
TGactgttgtattgttcttttTTAAGTTCTGTTCTTGGTCTCTTTCTAAG
CtgcattttatttagtgttgaCTAACTGTTTTTCTCTTCATGACGGGGTT
GAATATGTTGTCAACCTAGACCATATGTGCAAATGAATGCACTGTTTAAA
ACGTTTTTTTGTTACATTAGTTCAAACATTTCATTTGATGCAGACTGTGA
AATTATATACCAAAACAAGTGATTGAAAGTATTTGGCAATTTCCCCCCtc
taaataattttcttttatcatcATTAGAAGCCTTGGTTTTTCCCTGTTAA
CATGTGGTTTTGTTCTTTGGGGATGCTAAGGTTTTCCTTATGGACCCTTG
GTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACCGAATTCACCGAATAG
GGCAATACAAACCAATCAGGTGCTGCTTCTTGCACTCTAACTCTAGATTT
AAAATTGTAGAAAATGGAAACACAATTCGGTTAGTCCTTTCTTCAtgaag
ttgtaatattgttatCCTCTGCAGAATTGTAAGGTTTGTCATTGAAAACA
CAATAGAGGAGAGGATTTTGAAGTTGCAAGAGAAGAAGGAACTAGTGTTT
GAAGGGTAAGTTTGATATGTGAACAGGCAACTTGAAAGGTGCTCTGTATG
TTTGCcataataaataacttaatATGTAATGACATTTTGCTTTTTCTTCC
CTCCTTTTAATAGGACTATTGGTGGTTCTTCTGAGGCTCTGGGGAAATTG
ACCGAGGCTGACTTGAAATTTCTCTTTGTTACCTAA

protein sequence of rna-TanjilR_19700_La_Tanjil_v1.0

>rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=920bp
MELRSHRRRLSESSLSGTGKEKQPRDGIGEDETNSKCSNDTNEHVHDISS
DSDFNCEDEEFGVNFIPDLNEEPISSISVSDGEDILSDSYDAIEPLLNSG
KSQSRRKRKKSGFGEPSDGDRVVENGDDEEHLMVFQQSAPINLTKTKKKK
KGKRTRKEDSKPVLLWHAWEEQQEKWVDENLLEDFDIDHQSEVMNETVEP
SSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLA
KREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFT
LKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKHMMPPKEEC
QYCGKLFNPRSLTSHQRYFCGPGATRTDKQAKQIKKKKRDLTKKKLKELK
SWDEELEKGFMKKKNLELRSRTKDSDTKDRDKSFLHAVKWQRIILDEAHY
IKSRHSNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIIPYSYY
LCKDCDCKILDHSSSRQCSNCNHSTVRHFCWWNKYVATPIQSYGYGDCGR
RAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDSLDIKEQDYYE
SLYNESQSQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAA
LRGGNLAGNGTVEQECGLCHDQVEDPVVTSCEHVFCKSCLIDFSTSLGRV
SCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLENFQTSTK
IEALREEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKSGVSCVQLNGQ
MSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHVFLMDPWWNP
AVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIG
GSSEALGKLTEADLKFLFVT

mRNA from alignment at Chr_LG13-CM007373.1:3839377..3846462+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700; organism=Lupinus angustifolius; type=mRNA; length=7086bp; location=Sequence derived from: Chr_LG13-CM007373.1:3839377..3846462+ (Lupinus angustifolius
ATGGAACTTCGTTCTCATCGACGACGCCTTTCCGAATCATCACTCTCCGG
TAACACTATCTTTCTCACTctacttttctcttttctcttttcgtTCTTTG
GTTATTGACTTTGACGCTGTTTGATTACTGAGAAAATTTTATCGAATCGT
GACCGATCGTGATTTTTGGCCATGTCAATGCTTTTTCCTTTGTTGTCTGT
TCAAGtgtgtattttattattattattattatattattgctattattatt
atttttccatttttgcGAAATTTGAATCAAAATATTCTGCTTCGGTATGC
GTTGTGTTTAATTGAAAGTTGCTGTGTCAAATATAGCAATTTACTTTGGG
AAACTGAggtataattaatattaatcttTATTGATTGTAATGTTCAATTG
TTCATCCTTTGAATTAAGGAACAGGGAAGGAGAAGCAACCAAGAGATGGC
ATTGGGGAAGATGAAACTAATAGCAAGTGCAGCAATGACACCAATGAACA
TGTTCATGACATTTCTTCAGATTCTGATTTCAATTGTGAAGGTATATTGC
CTTTCTCTCCAGTTTGAATTTTTATGAAGATTTTGATTTTGAGATGTATG
TTTGTTTGGCTACAAGTGTGGGTTTTAAACTTTGTCTTTTGTCCACTTTA
AAGGAAATAATGTTCTTTCTCTGACATGTTTGTAGTCATAACTCGAGAAG
ATGTTTATGAACAAGTAACATGTCTATTATTTGTGTTTATAGTTTGACAT
GTGATTGAACTCTGAATGTAACGAAAACTGAGTAAAACTTACTAGTTAAC
ATTTCCTTCCTCTCTGGGAGAAAAATGTAACTCTTTTATCCTGCAAATTT
AGCAGTGAATTTCATTCTGTTTCTCCCCTTAAAAATCCATACAGATGAAG
AGTTCGGTGTGAACTTCATTCCTGACTTGAATGAAGAACCAATTTCAAGC
ATCAGTGTTTCTGATGGAGAAGATATTCTCTCTGACTCATATGATGCTAT
AGAGCCTTTATTGAATAGTGGAAAGTCGCAGTccagaaggaaaagaaaaa
aatccgGCTTCGGAGAACCAAGTGATGGTGATAGAGTGGTGGAGAATGGG
GATGATGAGGAACATTTGATGGTTTTTCAGCAATCAGCCCCTATTAATTT
GACCaagacaaaaaagaagaaaaaagggaaAAGGACAAGAAAGGAAGATT
CAAAGCCAGTGTTATTGTGGCATGCTTGGGAAGAGCAGCAAGAGAAATGG
GTCGATGAGAATTTATTGGAAGATTTTGACATAGATCACCAGAGTGAAGT
AATGAATGAAACTGTCGAGCCATCCTCAGATCTGATTATGCCTTTGCTAA
GGTATCAAAAGGAATGGTTAGCATGGGCTTTGAAACAGGAAAGTTCTGTG
ACTAAAGGAGGAATCCTTGCTGACGAAATGGGAATGGGGAAGACTATTCA
AGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCACCAGATGAGTTGTG
AAGCAGATGAACCATCATCTTCACCAGGTTCATCTACAGTCTTGCCTGCC
ATCAAAGGCACACTTGTCATCTGTCCTGTGGTTGCTGTCACTCAATGGGT
TAGTGAGATTGATCGGTTTACTTTGAAAGGAAGCACCAAGGTGTTGGTTT
ATCACGGGGCAAAGAGAGAGAAGAGTGGTGAACAGTTCTCAGAGTATGAC
TTTGTAATAACAACATACTCTATTGTGGAGTCTGAATACAGAAAGCATAT
GATGCCTCCTAAGGAGGAGTGCCAATATTGTGGAAAATTATTTAACCCAA
GGAGTTTAACTTCTCATCAGAGGTATTTTTGTGGGCCTGGTGCTACTAGA
ACAGATAAACAAGCAAagcaaataaagaaaaagaaaagagatctTACTAA
GAAGAAGCTCAAAGAATTGAAGTCTTGGGACGAAGAATTGGAAAAGGgtt
ttatgaagaaaaagaatttgGAATTGCGGTCGAGGACAAAAGATTCAGAT
ACCAAAGACAGGGACAAGTCATTTCTACATGCTGTGAAGTGGCAGCGTAT
CATACTGGATGAGGTCAGTTGCGAAAATATACTATTATTAAAAGCTAATG
TAATCATACTGTTTTTCTATACTTAGAATTTcctataaaatgttatttta
tgaaataaaagcACCATCTTGTGTCTTTCCTGTTGTTTCCACTTTCTCTA
TTTGTAAACATTGCAAGTTTCCTTTCTTTCTTGTTTGACTGTGCCCTGAT
AAACATTGTTATCTGTTCCCCCCCTAGAAACTCTGTTATCTGTTATCTGT
TATCTGTTATCTACTAATCAGTCATATTCACAAGTAAAGAAAGTAACAGA
TTATAAGCTTGACCTTAGTTTTATGGCTTAGTGGCTctaattttatgttt
cttataTTACCATTTTGTGTTATTTTACCTCGTCAAACATCTATCTAaaa
ctttttttcttatatGATAATAGGCACACTATATAAAATCTAGACATTCT
AACACTGCAAAAGCAGTTCTGGCTTTAGAGTCCTCCTACAGATGGGCATT
AAGTGGCACTCCCCTTCAGAACCGGGTTGGAGAGCTGTATTCTTTGGTAA
GTTTACTGTTTTTGGCTGTAATCTGTCAAgtttgatattttgatattatt
tgtcaaggaccgattctttctagAGGTTGTTAGGTCAAGGTCCATGAATG
GTTTTATATGtcaactttaaaataatttaccTACAATGCCATGCATGCAG
GTGCGATTTCTGCAAATAATTCCTTATTCATATTACTTATGCAAGGACTG
TGATTGCAAGATACTTGATCATAGGTATGGTTTTGGATTCAGTATTTTTA
ATGAACTGCGTGGATTCTAATTTAACTGGCAATCGTCGTATTTATGGCCT
TGATAGTTTATCCCTCTTGTGTGACTTGCTAAGAAAGGAACTGAATTCTC
AGCtttgttttctcatttttcatattGATCAAATGATTGCTTGAAAGACT
TCATGAATCTATTCTCCACTGGGTTCCACTCATGTAAAACAGAGaaaaat
gcttcttttttaGAGTATTTCATTATATCTAAATCTTTATATTCATGCTT
CAAACTTTGTAATGTTGAGGTTCATGACTGAATCTTTCTTTTACTGCTTT
CTGATCACTATTTATGCTAATGTGTTGTATCTGTTTGTGTGCATTCATAA
CATATGTGCATGTACATTTTTAAATGGTTGGTTTTCTTGATTTGTTATGT
TTGTTATCCTGGTGCCCTTTGCAGCTCCTCTAGACAATGTTCAAACTGCA
ACCACAGTACTGTTAGACATTTCTGTTGGTGGAACAAAGTAAGTTCTGCA
CATTTTCTTTTTGTGTTCTCCATTTTAGATAGAAACAGAGAGATAAACTC
TTGTAATTTCCTGGAAATTGTTTTAGCTAACACATGGACGTGTGTGTTAT
TATTCATGTTTCGTTTTGGTTAGTATGTTGCCACACCAATTCAATCATAT
GGGTATGGCGATTGTGGAAGAAGAGCTATGATATTGCTTAAACACAAAGT
TTTAAAGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCCGACC
TTGCACTTCCGCCTAGAATTGTAAGTTCTTGTTTCCCATGTGGCTGTGTG
TGCAATTCTAAATTCAGAGTGAGTACATATttatttctctaattttttgt
CGTTGCAGGTTTCATTAAGGAAGGATAGCCTGGACATAAAAGAGCAAGAC
TATTATGAATCGTTATACAATGAAAGTCAGTCACAGTTTAATACGTAAGT
CATGTTCTTTATCTTTACcataaaatatgatgaaaaggTTGACTTTGAAA
AGAGCGAACCTTTGATAAGAATTAGATTGCATTTTGTGGGCGGGGATGAA
TTCCTTGATTAAACCACCAAGTTATGAATGAAATAGTCCTGGAATTCATT
AGTAGTCCTGAAATTCCTTTTGTTAACGAGGGTAGTCTGGTAGGTCAAAA
CATAAGCCATAAAACTCTATGTGAAACTCTTACCCAACATGTGGTTAGTT
GGCTTACCATACCTTGAGAGTTTCCAAACTGGTTTTGCATGCATTCATGG
AAGATTATATTGGACAATAGCCAATGGGCCTATTCTCATGTATTCTCTAT
ATTCTTTCGTTGACATTACATTAtcactcatcatatgaaaatttGTTGTT
ACTTGAATTCTTTTTTCCTCACTTTTCGATCGGAAGGAAgaaggaagaga
agaaagaagtgaTGGGAAATGGATGAGTAATAAAGTGAGATTAAACCCTT
CACTCTTCAGGACATCCTTCATGTTAATGTATTGATGTTTTTTTGGGTGG
CGAGGAAAATTGGTTTCCagttcttttttttcttctatggACCTACCATT
CATATACGTAGTCTTTTATTACCATGTCTTTGATATTGGGAAAATTCATT
CTTCTATTGATACACAATTTCAATAGTGTGTTcaaatattttacttttga
aACATCAACATTAAACATACCGTGGTATAGGTATTACTAATATGCTTTCT
CCTTTGCAGATATGTTGAAGCAAATACTCTCATGAATAATTATGCTCATA
TATTTGACCTCCTTACACGATTGCGTCAGGTGAATGATCATTCTAACACG
ACCCCCAAAAAAATACTATACTTTTGCCATGtaatctttttctctctttg
aaCTTTTATGCTACAATATCTATTATGTTTATGTGGGGACATGTCTGTAA
AGACACTGTTAAATTAAAAAGCAGTGTAGGATAGACATTCattgatttca
ttttaaaaCTGAGTGACTTTGAAATATGGTTATATATGCTTACTTTATTT
CAATCCTCGTCTTTCATGTGGGATCTGGGAAGTCAGTTTCCCTTAGTTTT
CATTGAATATATTCAGATTTATTTGTACTTTTGTTCTGCCTCAATTACTT
GAAAGTGTTATTTCTGCCCATGTGTCTCATACATCTATGGTCGAAATATA
CAGGCTGTTGATCACCCATATCTTGTGGTATATTCTCCAACTGCAGCATT
AAGAGGTGGGAATTTAGCTGGTAATGGTACTGTTGAACAAGAATGTGGCC
TTTGTCATGATCAAGTAGAAGATCCTGTGGTATGGtcaacttctttttct
ttttaaataaacttatttgtcaaatttttttgttttattttcccTCCTTT
TCATACGTGTATGTGGAAAAGTTATTTCAGCCAACGTTAGTGTGCtattg
attttctttaaatgtCCTTTCTCCTTTCAGGTTACTTCTTGTGAGCATGT
TTTTTGCAAGTCATGCTTGATAGACTTTTCTACTTCCTTGGGACGAGTAT
CATGCCCCTCATGCTCTAAATTGCTTACTGTTGATTTAACTTCCAACATG
GTTGCTGGGGTTCATGCtaataaaacaacaattaagGGTTTCAGATCCTC
AAGCATTTTAAACAGAATTCAGCTCGAAAATTTTCAGACAAGCACTAAAA
TAGAGGCATTGGTATgtacatacatatataaaactcacTTACCTAATATT
TGAGTAAGTAGTAATCAGAAATAATGCTTCTGTGGCTGGGAAAAGTGGTC
CGTGTTTATGTTTTTACAATCTATCATAATTGTCTTGTATCTGAATGAGT
TGAAATTGTTGTAGAGAGAAGAAATCAGATTTATGGTTGAAAGGGATGGT
TCTGCCAAAGGGATTGTTTTTAGCCAGTACACATCATTCTTGGATCTCAT
AAACTACGCCCTGAACAAGGTAAATTTACTTGCCACTTTCTATTTCATTA
ATGCATGCAAAATATGTCAGGACAATAACATGGTGAGCTAATTGCAGTCA
GGCGTATCTTGTGTTCAATTGAATGGACAAATGTCATTGCCTGCTCGGGA
TGCTGCCATTAAGAGGTTTATTGATAACCCCGAATGCAGAATTTTTCTCA
TGAGCTTGAAAGCAGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACAT
GTAAGCAATCTCCTTTTGCATGTTTGTGCTGTGTCAATCCTTTTGGTATT
CTGCTTTGTGGAATTTTAAGTCGAGTTGTAAAGTAGttggaaatattttt
ataccTCATCATTTTGGCATGCACAAAAAGTTATAACACCGCTGTACATA
AATCAGTTCTACAGTCGATATGTGCTGGAGTTCTGTTGCATGACAAGTTT
TGTTTAGCTCCATTGTATTGGAGATTTTGTTCACGTTTTTACAGGAGCTT
CTTACTGTTTAAAATAGTTTATCCTTTAATTGATTTCCACTCCAAAGCTG
TGactgttgtattgttcttttTTAAGTTCTGTTCTTGGTCTCTTTCTAAG
CtgcattttatttagtgttgaCTAACTGTTTTTCTCTTCATGACGGGGTT
GAATATGTTGTCAACCTAGACCATATGTGCAAATGAATGCACTGTTTAAA
ACGTTTTTTTGTTACATTAGTTCAAACATTTCATTTGATGCAGACTGTGA
AATTATATACCAAAACAAGTGATTGAAAGTATTTGGCAATTTCCCCCCtc
taaataattttcttttatcatcATTAGAAGCCTTGGTTTTTCCCTGTTAA
CATGTGGTTTTGTTCTTTGGGGATGCTAAGGTTTTCCTTATGGACCCTTG
GTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACCGAATTCACCGAATAG
GGCAATACAAACCAATCAGGTGCTGCTTCTTGCACTCTAACTCTAGATTT
AAAATTGTAGAAAATGGAAACACAATTCGGTTAGTCCTTTCTTCAtgaag
ttgtaatattgttatCCTCTGCAGAATTGTAAGGTTTGTCATTGAAAACA
CAATAGAGGAGAGGATTTTGAAGTTGCAAGAGAAGAAGGAACTAGTGTTT
GAAGGGTAAGTTTGATATGTGAACAGGCAACTTGAAAGGTGCTCTGTATG
TTTGCcataataaataacttaatATGTAATGACATTTTGCTTTTTCTTCC
CTCCTTTTAATAGGACTATTGGTGGTTCTTCTGAGGCTCTGGGGAAATTG
ACCGAGGCTGACTTGAAATTTCTCTTTGTTACCTAA

Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3839377..3846462+

>rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700; organism=Lupinus angustifolius; type=CDS; length=2763bp; location=Sequence derived from: Chr_LG13-CM007373.1:3839377..3846462+ (Lupinus angustifolius
ATGGAACTTCGTTCTCATCGACGACGCCTTTCCGAATCATCACTCTCCGG
AACAGGGAAGGAGAAGCAACCAAGAGATGGCATTGGGGAAGATGAAACTA
ATAGCAAGTGCAGCAATGACACCAATGAACATGTTCATGACATTTCTTCA
GATTCTGATTTCAATTGTGAAGATGAAGAGTTCGGTGTGAACTTCATTCC
TGACTTGAATGAAGAACCAATTTCAAGCATCAGTGTTTCTGATGGAGAAG
ATATTCTCTCTGACTCATATGATGCTATAGAGCCTTTATTGAATAGTGGA
AAGTCGCAGTccagaaggaaaagaaaaaaatccgGCTTCGGAGAACCAAG
TGATGGTGATAGAGTGGTGGAGAATGGGGATGATGAGGAACATTTGATGG
TTTTTCAGCAATCAGCCCCTATTAATTTGACCaagacaaaaaagaagaaa
aaagggaaAAGGACAAGAAAGGAAGATTCAAAGCCAGTGTTATTGTGGCA
TGCTTGGGAAGAGCAGCAAGAGAAATGGGTCGATGAGAATTTATTGGAAG
ATTTTGACATAGATCACCAGAGTGAAGTAATGAATGAAACTGTCGAGCCA
TCCTCAGATCTGATTATGCCTTTGCTAAGGTATCAAAAGGAATGGTTAGC
ATGGGCTTTGAAACAGGAAAGTTCTGTGACTAAAGGAGGAATCCTTGCTG
ACGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCC
AAACGTGAATTCCACCAGATGAGTTGTGAAGCAGATGAACCATCATCTTC
ACCAGGTTCATCTACAGTCTTGCCTGCCATCAAAGGCACACTTGTCATCT
GTCCTGTGGTTGCTGTCACTCAATGGGTTAGTGAGATTGATCGGTTTACT
TTGAAAGGAAGCACCAAGGTGTTGGTTTATCACGGGGCAAAGAGAGAGAA
GAGTGGTGAACAGTTCTCAGAGTATGACTTTGTAATAACAACATACTCTA
TTGTGGAGTCTGAATACAGAAAGCATATGATGCCTCCTAAGGAGGAGTGC
CAATATTGTGGAAAATTATTTAACCCAAGGAGTTTAACTTCTCATCAGAG
GTATTTTTGTGGGCCTGGTGCTACTAGAACAGATAAACAAGCAAagcaaa
taaagaaaaagaaaagagatctTACTAAGAAGAAGCTCAAAGAATTGAAG
TCTTGGGACGAAGAATTGGAAAAGGgttttatgaagaaaaagaatttgGA
ATTGCGGTCGAGGACAAAAGATTCAGATACCAAAGACAGGGACAAGTCAT
TTCTACATGCTGTGAAGTGGCAGCGTATCATACTGGATGAGGCACACTAT
ATAAAATCTAGACATTCTAACACTGCAAAAGCAGTTCTGGCTTTAGAGTC
CTCCTACAGATGGGCATTAAGTGGCACTCCCCTTCAGAACCGGGTTGGAG
AGCTGTATTCTTTGGTGCGATTTCTGCAAATAATTCCTTATTCATATTAC
TTATGCAAGGACTGTGATTGCAAGATACTTGATCATAGCTCCTCTAGACA
ATGTTCAAACTGCAACCACAGTACTGTTAGACATTTCTGTTGGTGGAACA
AATATGTTGCCACACCAATTCAATCATATGGGTATGGCGATTGTGGAAGA
AGAGCTATGATATTGCTTAAACACAAAGTTTTAAAGAACATAGTTCTAAG
GCGCACTAAAATAGGCAGGGCTGCCGACCTTGCACTTCCGCCTAGAATTG
TTTCATTAAGGAAGGATAGCCTGGACATAAAAGAGCAAGACTATTATGAA
TCGTTATACAATGAAAGTCAGTCACAGTTTAATACATATGTTGAAGCAAA
TACTCTCATGAATAATTATGCTCATATATTTGACCTCCTTACACGATTGC
GTCAGGCTGTTGATCACCCATATCTTGTGGTATATTCTCCAACTGCAGCA
TTAAGAGGTGGGAATTTAGCTGGTAATGGTACTGTTGAACAAGAATGTGG
CCTTTGTCATGATCAAGTAGAAGATCCTGTGGTTACTTCTTGTGAGCATG
TTTTTTGCAAGTCATGCTTGATAGACTTTTCTACTTCCTTGGGACGAGTA
TCATGCCCCTCATGCTCTAAATTGCTTACTGTTGATTTAACTTCCAACAT
GGTTGCTGGGGTTCATGCtaataaaacaacaattaagGGTTTCAGATCCT
CAAGCATTTTAAACAGAATTCAGCTCGAAAATTTTCAGACAAGCACTAAA
ATAGAGGCATTGAGAGAAGAAATCAGATTTATGGTTGAAAGGGATGGTTC
TGCCAAAGGGATTGTTTTTAGCCAGTACACATCATTCTTGGATCTCATAA
ACTACGCCCTGAACAAGTCAGGCGTATCTTGTGTTCAATTGAATGGACAA
ATGTCATTGCCTGCTCGGGATGCTGCCATTAAGAGGTTTATTGATAACCC
CGAATGCAGAATTTTTCTCATGAGCTTGAAAGCAGGAGGTGTTGCTCTCA
ATTTGACAGTAGCATCACATGTTTTCCTTATGGACCCTTGGTGGAACCCT
GCAGTGGAGCGTCAGGCTCAAGACCGAATTCACCGAATAGGGCAATACAA
ACCAATCAGAATTGTAAGGTTTGTCATTGAAAACACAATAGAGGAGAGGA
TTTTGAAGTTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATTGGT
GGTTCTTCTGAGGCTCTGGGGAAATTGACCGAGGCTGACTTGAAATTTCT
CTTTGTTACCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C-like
IPR014001	Helicase_ATP-bd
IPR001841	Znf_RING
IPR000330	SNF2_N
IPR038718	SNF2-like_sf
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Search form

rna-TanjilR_19700