rna-TanjilR_19700
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp16 PE=3 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 7.932e-24 Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 3 Query: 1314 VEPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRK 1745
+E +L++ LL +Q+E + W +QE S GGILADEMGMGKTIQ IAL+L+ EP P TLV+ PVVA+ QW EID T K + L Y+G R+ SGE+ S YD V+T+Y+++ES YRK
Sbjct: 245 IEQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLS------------EPRGKP-----------TLVVAPVVAIMQWKEEIDTHTNKALSTYL-YYGQARDISGEELSSYDVVLTSYNVIESVYRK 364 HSP 2 Score: 105.531 bits (262), Expect = 3.087e-21 Identity = 76/243 (31.28%), Postives = 113/243 (46.50%), Query Frame = 1 Query: 5284 TSCEHVFCKSCLIDFSTSLG---RVSCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLENFQTSTKIEALVCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
+ C H FC+ C+ ++ + G V+CPSC L++DL++ + K F+++SILNRI + ++++STKIEALV EE+ + ++D + K IVFSQ+TS LDLI++ L K +G +CV+L+G M+ AR A I+ F ++ IFL+SLKAGGVALNLT AS V
Sbjct: 622 SRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEK-----FKNASILNRIDMNSWRSSTKIEALV---------------------------------------------------EELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRK--------------------------AGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQV 782 HSP 3 Score: 50.8322 bits (120), Expect = 4.789e-8 Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 3 Query: 3465 FG*YVATPIQSYGYGDCGRRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVS 3626
F + PIQ +GY G+ A + H +LK+I+LRRTK+ RA DL LPPR+V
Sbjct: 481 FNAEMLKPIQKFGYEGPGKLAFKKV-HSLLKHIMLRRTKLERADDLGLPPRVVE 533 HSP 4 Score: 31.5722 bits (70), Expect = 4.789e-8 Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 1 Query: 3709 VSLRKDSLDIKEQDYYESLYNESQSQFNT 3795
V +RKD + +E+D Y+SLY +S+ +FNT
Sbjct: 532 VEVRKDLFNEEEEDVYQSLYMDSKRKFNT 560
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus OX=10090 GN=Ttf2 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 7.557e-21 Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 3 Query: 1314 VEPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMS-CEADEPSS--SPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESE 1736
E + L +PLL +QK+ LAW L +ES +GGILAD+MG+GKT+ IAL+L K+ + E EP + S S+V + GTL++CP + W +E+++ ++ +YHG R + + S YD VITTYS++ E
Sbjct: 536 AEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWLSKNDSSVFTS-SGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKVLSTYDIVITTYSLLAKE 678
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: RAD16_YEAST (DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD16 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.980e-21 Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 3 Query: 1332 LIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKH 1748
+ + LL +Q E L W + QE S+ GG+LADEMGMGKTIQ IAL++ ++ + SP +LV+ P VA+ QW +EI++ T KG K+ +YHGA R + YD V+TTY+++ES +RK
Sbjct: 180 MTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALLM------------NDLTKSP-----------SLVVAPTVALMQWKNEIEQHT-KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESVFRKQ 294 HSP 2 Score: 88.9669 bits (219), Expect = 3.280e-16 Identity = 71/245 (28.98%), Postives = 107/245 (43.67%), Query Frame = 1 Query: 5284 TSCEHVFCKSCLIDFSTSL----GRVSCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLE-NFQTSTKIEALVCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
+ C H FC+ C+ ++ S +++CP C L++DL+ A + + F+ SI++R+ + +Q+STKIEALV +YK + SN++ + K IVFSQ+TS LDL+ + L + +G V+L G MS RD IK F++N +C +FL+SLKAGGVALNL AS V
Sbjct: 550 SKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQ------PALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALV-EELYK-------LRSNKR-------------------------------------------TIKSIVFSQFTSMLDLVEWRLKR--------------------------AGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQV 711 HSP 3 Score: 73.1738 bits (178), Expect = 2.663e-11 Identity = 45/151 (29.80%), Postives = 63/151 (41.72%), Query Frame = 1 Query: 6625 AKVFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKKELVFEG*V*YVNRQLERCSVCLP**IT*YVMTFCFFFPPFNRTIGGSSEALGKLTEADLKFLF 7077
++VF++DPWWNP+VE Q+ DR+HRIGQY+P+ +I RF IE++IE RI++LQEKK + TI A+ +LT ADL+FLF
Sbjct: 709 SQVFILDPWWNPSVEWQSGDRVHRIGQYRPV-----------------------------------KITRFCIEDSIEARIIELQEKKANMIHA------------------------------------TINQDEAAISRLTPADLQFLF 788 HSP 4 Score: 67.0106 bits (162), Expect = 1.857e-9 Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 2 Query: 2474 AHYIKSRHSNTAKAVLALESSYRWALSGTPLQNRVGELYSLVSLL 2608
AH IK R SNTA+AV L++ RW LSGTPLQNR+GE+YSL+ L
Sbjct: 324 AHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFL 368
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens OX=9606 GN=TTF2 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 1.426e-18 Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 3 Query: 1308 ETV--EPSSDLIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSS----PGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESE 1736
ETV E + L +PLL +QK+ LAW L +ES +GGILAD+MG+GKT+ IAL+L ++ +Q E E S++ + GTL+ICP + W +E+++ +V +YHG R+ S YD VITTYS+V E
Sbjct: 556 ETVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQK--NQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKE 702
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: CHR27_ARATH (Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.219e-18 Identity = 70/225 (31.11%), Postives = 104/225 (46.22%), Query Frame = 3 Query: 1254 DENLLEDFDIDHQSEVMNETVEPSSDLIMPLLRYQKEWLAWALKQESSV--TKGGILADEMGMGKTIQAIALVLAKREFHQM----SC---------EADEPS-----------------SSPGSSTVLPAI-------------------------------KGTLVICPVVAVTQWVSEID-RFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESE 1736
DE L+ + ++ M E+ P L +PL+R+QK LAW ++E+S GGILAD+ G+GKT+ IAL+L ++ Q+ SC +AD+ S SS ++VL A GTL++CP V QW E+D + + + VLVYHG+ R K + +EYD V+TTY+IV +E
Sbjct: 251 DERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDSSDMEKAEDEEANSSTRAFQWKRPAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTNE 475 HSP 2 Score: 70.0922 bits (170), Expect = 2.917e-10 Identity = 72/263 (27.38%), Postives = 109/263 (41.44%), Query Frame = 1 Query: 5251 IFFKC---PFSFQVTSCEHVFCKSCLIDFSTSLGRV-SCPSCSKLLTVDLTSNMVAGVHANKTTIKGFRSSSILNRIQLENFQT----STKIEAL--VCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMV--ERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
I ++C P VT C H+FC C++++ T P C + L D+ N T+ SSS N + FQ S+KI+A+ + + + PN S Q G S + + ++ E +R G+ K I+FSQ+T LDL+ + L+SG+ +L+G MSL ARD A+K F P+ ++ LMSLKAG + LN+ A HV
Sbjct: 750 ICYECNEPPEKPVVTLCGHIFCYECVLEYITGDENTCPVPRCKQQLARDVV--FSESSLRNCTSDDSGCSSSHDNGLDRSVFQKRDFCSSKIKAVLDILQSLSQPDSPN----SAQH----GQMPSSSRPYDDDDVTIV----------EPMRLHSSSPSQGAVKTIIFSQWTGMLDLVELRI--------------------------LESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHV 966 HSP 3 Score: 58.9214 bits (141), Expect = 7.340e-7 Identity = 30/89 (33.71%), Postives = 40/89 (44.94%), Query Frame = 1 Query: 6631 VFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKKELV 6897
V L+D WWNP E QA DR HRIGQ +P+ + R I++T+E+RILKLQE+K +
Sbjct: 966 VILLDLWWNPTTEDQAIDRAHRIGQTRPV-----------------------------------TVTRITIKDTVEDRILKLQEEKRTM 1019
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC23E6.02 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.319e-17 Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3 Query: 1332 LIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEI-DRFTLKGSTKVLVYHG-AKREKSGEQFSEYDFVITTYSIVESEYRKHM 1751
LI L+ +QKE L W + E S KGGILAD+MG+GKT+QA+AL++ + P S +V K TL+I PV + QW +EI + V ++HG +K+ K EQ YD V+TTY+++ E++ M
Sbjct: 386 LIPTLMEHQKEGLMWLKRLEESSKKGGILADDMGLGKTVQALALLVTR---------------PPESKSV----KTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKM 508
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: CHR28_ARATH (Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.080e-17 Identity = 64/220 (29.09%), Postives = 102/220 (46.36%), Query Frame = 3 Query: 1233 EQQEKWVDENLLEDFDIDHQSEVMNETVEPSSDLIMPLLRYQKEWLAWALKQESSV--TKGGILADEMGMGKTIQAIALVL-------------AKREFHQMSCEADEPSSSP---------------GSSTVLPA-----------------IKGTLVICPVVAVTQWVSEID-RFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKH 1748
E++ DE L+ + ++ +E P+ L +PL+++QK LAW ++E++ GGILAD+ G+GKT+ IAL+L +E + +AD+ S + G S + A GTL++CP V QW E+D + T + VL+YHG R K + ++YD V+TTY+IV +E K
Sbjct: 189 EERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKLKSKNSGNQEAEALDLDADDESENAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQ 408 HSP 2 Score: 62.3882 bits (150), Expect = 5.699e-8 Identity = 64/258 (24.81%), Postives = 107/258 (41.47%), Query Frame = 1 Query: 5266 PFSFQVTSCEHVFCKSCLIDFSTSLGRVSCPS--CSKLLTVDLTSNMVAGVHANKTTIKGFR------SSSILNRIQLENFQ----TSTKIEALVCTYIYKTHLPNI*VSSNQK*CFCGWEKWSVFMFLQSIIIVLYLNELKLL*REEIRFMVERDGSAKGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
P VT C H+FC C+ D+ T +CP+ C + L D+ +K+T++ SSS N FQ +S+KI+A++ ++ + N + + + ++ LK G K I+FSQ+T LDL+ +L +++ + +L+G MSL ARD A+K F ++P+ ++ +MSLKAG + LN+ A HV
Sbjct: 686 PEDPVVTLCGHIFCYQCVSDYITG-DEDTCPAPRCREQLAHDVV--------FSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLSNQGTSNSTQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLK--------STPSNGGPIKTIIFSQWTGMLDLVELSL--------------------------IENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHV 900 HSP 3 Score: 59.6918 bits (143), Expect = 3.598e-7 Identity = 44/150 (29.33%), Postives = 66/150 (44.00%), Query Frame = 1 Query: 6466 ISSNISF---DADCEIIYQNK*LKVFGNFPPLNNFLLSSLEA------LVFPC*HVVLFFGDAKVFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKK 6888
I ++I F D +I +++ +K F N P + ++ SL+A ++ C HV+L +D WWNP E QA DR HRIGQ +P+ + R I+NT+E+RIL LQE+K
Sbjct: 847 IENSIEFRRLDGTMSLIARDRAVKEFSNDPDVK-VMIMSLKAGNLGLNMIAAC-HVIL---------LDLWWNPTTEDQAIDRAHRIGQTRPV-----------------------------------TVTRITIKNTVEDRILALQEEK 950
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster OX=7227 GN=lds PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.826e-16 Identity = 56/153 (36.60%), Postives = 79/153 (51.63%), Query Frame = 3 Query: 1332 LIMPLLRYQKEWLAWALKQESSVTKGGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIK----------------GTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYR 1742
L + L+ +QK LAW +E + +GGILAD+MG+GKT+ I+ VLA + +MS DE S S K GTLV+CP + QW SE++ + V V+HG RE G+ +YD V+TTY IV E++
Sbjct: 435 LKVSLMNHQKHALAWMSWRERKLPRGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHK 587
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: YBMA_SCHPO (Uncharacterized ATP-dependent helicase C582.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC582.10c PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.740e-15 Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 3 Query: 1344 LLRYQKEWLAWALKQESSVTK----GGILADEMGMGKTIQAIALVLAKREFHQMSCEADEPSSSPGSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKH 1748
LL +Q + L W LK +V+K GGILAD+MG+GKTIQ IAL+L+ H + + +IK TLV+ P+ + QW SE+ K +VYHGA R K + EYD VITTY I+ SE+ H
Sbjct: 233 LLDHQVQGLTW-LKSRETVSKSSASGGILADDMGLGKTIQMIALILS----HPLPKKKH-------------SIKSTLVVAPLSLIKQWESEVQ---TKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSEWVSH 350
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Match: SM3L3_ARATH (DNA repair protein RAD5B OS=Arabidopsis thaliana OX=3702 GN=RAD5B PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.263e-14 Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 3 Query: 1392 SSVTKGGILADEMGMGKTIQAIALVLAK--------REFHQMSCEADEPSSSP--GSSTVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKREKSGEQFSEYDFVITTYSIVESEYRKHM 1751
+ + +GGILAD MG+GKT+ IAL+LA+ + AD+ + + T + A GTL+ICP+ ++QW E++ + + VLVY+G R + + +D V+TTY ++ S Y++ M
Sbjct: 677 TQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQDM 806 HSP 2 Score: 60.8474 bits (146), Expect = 1.739e-7 Identity = 33/92 (35.87%), Postives = 45/92 (48.91%), Query Frame = 1 Query: 6631 VFLMDPWWNPAVERQAQDRIHRIGQYKPIRCCFLHSNSRFKIVENGNTIRLVLSS*SCNIVILCRIVRFVIENTIEERILKLQEKKELVFEG 6906
VFLMDPWWNPAVE QA RIHRIGQ R F+ RF++++T+EER+ ++Q +K+ + G
Sbjct: 1201 VFLMDPWWNPAVEEQAIMRIHRIGQK---RTVFVR--------------------------------RFIVKDTVEERMQQVQARKQRMIAG 1257 HSP 3 Score: 59.6918 bits (143), Expect = 3.713e-7 Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = 1 Query: 5686 VERDGSA-KGIVFSQYTSFLDLINYALNKVNLLATFYFINACKICQDNNMVS*LQSGVSCVQLNGQMSLPARDAAIKRFIDNPECRIFLMSLKAGGVALNLTVASHV 6003
+++ GS K IVFSQ+TSFLDL+ L + G ++ +G+++ R+ +K F + + I LMSLKAGGV LNLT AS V
Sbjct: 1121 IKKSGSGEKSIVFSQWTSFLDLLEIPLRR--------------------------RGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSV 1201 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19700 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700; organism=Lupinus angustifolius; type=mRNA; length=7086bpback to top protein sequence of rna-TanjilR_19700_La_Tanjil_v1.0 >rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=920bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3839377..3846462+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700; organism=Lupinus angustifolius; type=mRNA; length=7086bp; location=Sequence derived from: Chr_LG13-CM007373.1:3839377..3846462+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3839377..3846462+ >rna-TanjilR_19700_La_Tanjil_v1.0 ID=rna-TanjilR_19700_La_Tanjil_v1.0; Name=rna-TanjilR_19700; organism=Lupinus angustifolius; type=CDS; length=2763bp; location=Sequence derived from: Chr_LG13-CM007373.1:3839377..3846462+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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